Rh6DG114200

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000610
Physical Location & Seq
Forward (+)
15079885 .. 15080272
388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG114200.1

Sequence Viewer

Length: 186 bp
ATGTCAGATGCACATACCATTAATTTGAAGCCAGGGCCGCTCTTTCCATGTTCTGAAAAACACACCTTTGTAATGGAGGTTGAACAGCAAAAGACTTACCTGCTACGGATCATCAATGCTGCACTCAATGACGAGCTATTCTTTGCAATTGCTGGCCACAATTTGACAGTACGTGGTAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

61

Amino Acids

6.85

Weight (kDa)

6.81

Isoelectric Point (pI)

28.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 57 3.5e-14 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 154
AfaI GTAC 1 cut(s) 171
AgsI TTSAA 2 cut(s) 28, 83
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 35, 154
ApeKI GCWGC 1 cut(s) 119
AseI ATTAAT 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 156
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 108
BisI GCNGC 2 cut(s) 38, 120
BlsI GCNGC 2 cut(s) 39, 121
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 2 cut(s) 37, 156
BsnI GGCC 2 cut(s) 37, 156
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 37, 156
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 37, 156
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 48
CviJI RGCY 4 cut(s) 31, 37, 136, 156
CviKI_1 RGCY 4 cut(s) 31, 37, 136, 156
CviQI GTAC 1 cut(s) 170
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 51
FaiI YATR 2 cut(s) 15, 49
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 38, 120
Fsp4HI GCNGC 2 cut(s) 38, 120
GluI GCNGC 2 cut(s) 38, 120
HaeIII GGCC 2 cut(s) 37, 156
Hin1II CATG 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 7, 55
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 11, 122, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 18, 45, 113, 138
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 172
MalI GATC 1 cut(s) 110
MbiI CCGCTC 1 cut(s) 40
MboI GATC 1 cut(s) 108
MfeI CAATTG 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 3 cut(s) 22, 147, 160
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 2 cut(s) 70, 173
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 51
PkrI GCNGC 2 cut(s) 39, 121
Ppu21I YACGTR 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspPI GGNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 38, 120
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 33
SetI ASST 6 cut(s) 68, 81, 102, 138, 175, 184
SgeI CNNG 6 cut(s) 44, 45, 60, 112, 145, 165
Sse9I AATT 3 cut(s) 22, 147, 160
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 175
TasI AATT 3 cut(s) 22, 147, 160
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 1 cut(s) 119
TspGWI ACGGA 1 cut(s) 121
VspI ATTAAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.