Rh6CG127600

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000610
Physical Location & Seq
Forward (+)
15232265 .. 15234094
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG127600.1

Sequence Viewer

Length: 831 bp
ATGGCTGCAAGGCCATTCATGGATGCACCTCTTTCCATAGACAATAAGACTGCCACTGCAATCCTGCAATATAAAGGCATCCCCAATTCTGTGCAGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGCCCTGAGCTACAACGGGAAACTGAGAAGCCTAAACACCGCAAAGTACCCAGCAAATGTACCTCTTAAAGTCGATAGACAGCTTTTCTACACAATTGGTTTGGGAATCAACCAATGCACAACTTGCCTGAATGGAACACAGCTCACTGCTTCTTTGAACAACATCACTTTCGTGATGCCCCAAATCGGGCTGCTTCAAGCTCATTACTTCAACACCAAGGGGGTATTTACCACAGACTTCCCTGACCGTCCTCCAACACCTTTCAATTATACAGGTGCACCACTCACTGCCAACCTCGGAACCAAACTAGGCACCCGGCTAAGCAAGATCACCTTTAACTCGACAGTAGAGTTGGTGCTACAAGATACCAATCTGCTCACAGTGGAATCCCATCCATTCCACCTTCATGGTTACAACTTTTTCATTGTTGGGACTGGAGTTGGGAACTTTGACCCCAAGAAGGACCCGGCTAAGTTTAACTTGGTGGATCCTCCTGAAAGAAACACAGTTGGGGTTCCCACCGGTGGTTGGGCCGCCATAAGATTCAGGGCTGACAATCCAGGTGTGTGGTTCATGCACTGTCACTTGGAGCTGCATACTAGCTGGGGTTTGAAGATGGCATTTGTGGTAGAAAATGGGAAAGGCTCAGATAAATCTGTGTTGCCTCCACCTGCAGACCTTCCACCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

276

Amino Acids

30.13

Weight (kDa)

8.84

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 125 - 259 3.3e-43 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 817
Acc36I ACCTGC 1 cut(s) 817
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 2 cut(s) 177, 672
AclWI GGATC 2 cut(s) 620, 633
AfaI GTAC 2 cut(s) 185, 198
AfiI CCNNNNNNNGG 5 cut(s) 323, 324, 598, 662, 666
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 5 cut(s) 295, 335, 349, 403, 751
AjnI CCWGG 1 cut(s) 697
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 7 cut(s) 134, 147, 220, 280, 338, 730, 741
AluI AGCT 7 cut(s) 134, 147, 220, 280, 338, 730, 741
Alw21I GWGCWC 1 cut(s) 418
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 2 cut(s) 620, 633
AoxI GGCC 2 cut(s) 11, 669
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 4 cut(s) 5, 94, 328, 730
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AsiGI ACCGGT 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 601, 669
AsuC2I CCSGG 2 cut(s) 454, 605
AsuHPI GGTGA 1 cut(s) 460
AvaII GGWCC 1 cut(s) 601
BaeGI GKGCMC 1 cut(s) 418
BamHI GGATCC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 106, 315, 717
BccI CCATC 2 cut(s) 537, 748
BciT130I CCWGG 1 cut(s) 699
BcnI CCSGG 2 cut(s) 454, 605
BfaI CTAG 2 cut(s) 446, 738
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 817
BisI GCNGC 5 cut(s) 6, 95, 329, 672, 731
BlpI GCTNAGC 1 cut(s) 458
BlsI GCNGC 5 cut(s) 7, 96, 330, 673, 732
Bme1390I CCNGG 3 cut(s) 454, 605, 699
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 601, 669
BmiI GGNNCC 5 cut(s) 439, 451, 603, 627, 654
BmrFI CCNGG 3 cut(s) 454, 605, 699
BmsI GCATC 3 cut(s) 13, 87, 303
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 454, 605
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 354, 433
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 5 cut(s) 323, 324, 598, 662, 666
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 98, 577
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 354, 433
BseGI GGATG 3 cut(s) 28, 78, 529
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 5 cut(s) 323, 324, 598, 662, 666
BseMII CTCAG 3 cut(s) 134, 152, 798
BseNI ACTGG 2 cut(s) 98, 577
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 3 cut(s) 106, 315, 717
BseYI CCCAGC 2 cut(s) 187, 741
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 13, 671
BshNI GGYRCC 1 cut(s) 449
BshTI ACCGGT 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 3 cut(s) 454, 605, 660
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 5 cut(s) 323, 324, 598, 662, 666
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 2 cut(s) 13, 671
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 2 cut(s) 465, 625
Bsp1720I GCTNAGC 1 cut(s) 458
BspACI CCGC 2 cut(s) 177, 672
BspANI GGCC 2 cut(s) 13, 671
BspCNI CTCAG 3 cut(s) 135, 153, 797
BspLI GGNNCC 5 cut(s) 439, 451, 603, 627, 654
BspMAI CTGCAG 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 817
BspPI GGATC 2 cut(s) 620, 633
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 659
BsrI ACTGG 2 cut(s) 98, 577
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 354, 433
BssMI GATC 2 cut(s) 465, 625
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 5 cut(s) 386, 484, 520, 646, 719
BstAPI GCANNNNNTGC 1 cut(s) 261
BstDEI CTNAG 5 cut(s) 143, 161, 458, 609, 784
BstF5I GGATG 3 cut(s) 28, 78, 529
BstKTI GATC 2 cut(s) 468, 628
BstMBI GATC 2 cut(s) 465, 625
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 452, 603, 697
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 3 cut(s) 106, 315, 717
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 2 cut(s) 545, 705
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 2 cut(s) 13, 671
BtsCI GGATG 3 cut(s) 28, 78, 529
BtsI GCAGTG 3 cut(s) 54, 282, 423
BtsIMutI CAGTG 5 cut(s) 54, 282, 423, 525, 715
BveI ACCTGC 1 cut(s) 817
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 601, 669
Csp6I GTAC 2 cut(s) 184, 197
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 3 cut(s) 19, 545, 712
CviQI GTAC 2 cut(s) 184, 197
DdeI CTNAG 5 cut(s) 143, 161, 458, 609, 784
DpnI GATC 2 cut(s) 467, 627
DpnII GATC 2 cut(s) 465, 625
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 22, 548, 715
FaiI YATR 8 cut(s) 20, 38, 72, 408, 546, 677, 713, 735
FalI AAGNNNNNCTT 4 cut(s) 455, 487, 602, 634
FaqI GGGAC 1 cut(s) 583
FatI CATG 3 cut(s) 18, 544, 711
Fnu4HI GCNGC 5 cut(s) 6, 95, 329, 672, 731
FokI GGATG 3 cut(s) 35, 65, 516
Fsp4HI GCNGC 5 cut(s) 6, 95, 329, 672, 731
FspBI CTAG 2 cut(s) 446, 738
GluI GCNGC 5 cut(s) 6, 95, 329, 672, 731
GsaI CCCAGC 2 cut(s) 191, 745
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 13, 671
HapII CCGG 3 cut(s) 454, 605, 660
Hin1II CATG 3 cut(s) 22, 548, 715
HinfI GANTC 3 cut(s) 243, 524, 681
HpaII CCGG 3 cut(s) 454, 605, 660
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 437, 787
Hpy188III TCNNGA 2 cut(s) 310, 632
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 3 cut(s) 551, 592, 827
HpyCH4III ACNGT 5 cut(s) 386, 484, 520, 646, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 5 cut(s) 143, 161, 458, 609, 784
Hsp92II CATG 3 cut(s) 22, 548, 715
Kzo9I GATC 2 cut(s) 465, 625
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 3 cut(s) 106, 315, 717
LweI GCATC 3 cut(s) 13, 87, 303
MaeI CTAG 2 cut(s) 446, 738
MaeIII GTNAC 2 cut(s) 548, 719
MalI GATC 2 cut(s) 467, 627
MboI GATC 2 cut(s) 465, 625
MboII GAAGA 1 cut(s) 763
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 3 cut(s) 85, 231, 403
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 6 cut(s) 39, 210, 399, 443, 639, 813
MseI TTAA 3 cut(s) 204, 474, 615
MslI CAYNNNNRTG 2 cut(s) 308, 543
MspI CCGG 3 cut(s) 454, 605, 660
MspR9I CCNGG 3 cut(s) 454, 605, 699
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 261
NciI CCSGG 2 cut(s) 454, 605
NdeII GATC 2 cut(s) 465, 625
NlaIII CATG 3 cut(s) 22, 548, 715
NlaIV GGNNCC 5 cut(s) 439, 451, 603, 627, 654
NmuCI GTSAC 1 cut(s) 719
OliI CACNNNNGTG 1 cut(s) 308
PaqCI CACCTGC 1 cut(s) 817
PfeI GAWTC 3 cut(s) 243, 524, 681
PinAI ACCGGT 1 cut(s) 659
PkrI GCNGC 5 cut(s) 7, 96, 330, 673, 732
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 697
PspFI CCCAGC 2 cut(s) 187, 741
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 5 cut(s) 439, 451, 603, 627, 654
PspPI GGNCC 2 cut(s) 601, 669
PspPPI RGGWCCY 1 cut(s) 601
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 2 cut(s) 185, 198
RsaNI GTAC 2 cut(s) 184, 197
RseI CAYNNNNRTG 2 cut(s) 308, 543
SaqAI TTAA 3 cut(s) 204, 474, 615
SatI GCNGC 5 cut(s) 6, 95, 329, 672, 731
Sau3AI GATC 2 cut(s) 465, 625
Sau96I GGNCC 2 cut(s) 601, 669
ScrFI CCNGG 3 cut(s) 454, 605, 699
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 3 cut(s) 13, 87, 303
SfcI CTRYAG 1 cut(s) 810
SgrAI CRCCGGYG 1 cut(s) 659
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 2 cut(s) 308, 543
Sse9I AATT 3 cut(s) 85, 231, 403
SsiI CCGC 2 cut(s) 177, 672
SspMI CTAG 2 cut(s) 446, 738
StyD4I CCNGG 3 cut(s) 452, 603, 697
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 5 cut(s) 386, 484, 520, 646, 719
TaqI TCGA 2 cut(s) 210, 479
TasI AATT 3 cut(s) 85, 231, 403
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 3 cut(s) 243, 524, 681
Tru1I TTAA 3 cut(s) 204, 474, 615
Tru9I TTAA 3 cut(s) 204, 474, 615
TscAI CASTG 5 cut(s) 61, 289, 430, 525, 722
TseFI GTSAC 1 cut(s) 719
TseI GCWGC 4 cut(s) 5, 94, 328, 730
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 4 cut(s) 7, 533, 550, 700
TspRI CASTG 5 cut(s) 61, 289, 430, 525, 722
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 601
XspI CTAG 2 cut(s) 446, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.