Rh5AG406100

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000610
Physical Location & Seq
Reverse (-)
70273758 .. 70277401
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG406100.1

Sequence Viewer

Length: 1749 bp
ATGGGTGTTGCTCTTCTTTCACTTGTTAGGCACTTTGTTCTCTTTTTCATCACATTTGGTCTCATTCCTCATCAGCAAACTCTTGCAAGCATAACAAGGCACTACAAATTTGATATCCAACTGCAAAATGTGACAAGGCTGTGCCACACCAAGAGCATTGTAACCGTAAACGGACAATTTCCTGGGCCTCGAATTGTTGCTAGGGAGGGTGATCACCTCCTCATTAAAGTGGTTAACCATGTTCAAAGCAATATCTCCATCCATTGGCATGGGATTCGACAGCTTCAAACCGGGTGGGCCGATGGTCCGGCATACATTACTCAATGCCCGATACAAACCGGCAACAACTATGTGTATAACTTTACCATTATAGGCCAAAGAGGCACGCTTTGGTGGCATGCTCACATTTCATGGCTAAGAACAACCATCTATGGCCCCTTAATCATTCTTCCCAAGCGTGGTGTTCCTTATCCATTTACCAAACCCTACAAGGAAGTTCCCATCATCTTTGGAGAATGGTGGAATGTGGATCCTGAAGCAGTCATAAACCAGGCCCTGCAGACTGGGGGAGGACCAAATGTTTCTGATGCTTATACCATTAATGGCCTCCCAGGACCTTTGTATAACTGCTCTGCCAAAGATACATTCAAGATTAAGGTTCAAGCTGGGAAGACATACCTTCTGCGCTTGATCAATGCAGCACTGAACGACGAACTTTTCTTCAGCATTGCAAATCATATCCTCAAAGTAGTCGAAACAGACGCTGTTTATGTTAAGCCCTTCGACACCAACACCATTCTCATTGCCCCGGGACAAACCACAAACGTTCTTCTCAAAACCAAGCCTAACTTCCCAAATGCCACATTTCTCATGACCGCAAGGCCATACGTGACTGGTCTAGGAACCTTTGACAACTCCACTGTTGCTGCCATTCTAGAGTACGAAACGACTACACTTCACTCAATCCTCCCATTGAACAAACTTCCGCTCCACAAACCAATTCTCCCAGCTCTAAACGACACATCGTTTGCAACAAAGTTCGCCAGCAAACTCCACAGCTTAAACACTCCAGAGTTCCCAGCGAACGTCCCGCAGAAAGTTGACAAGCGTTTGTTCTTCACAATAGGACTTGGAACCAACCCATGTAGCCAGCAGCAGCACAACAACCAAACCTGCCAAGGACCCAATGGAACCATGTTTGCTGCTTCAATCAACAACGTTTCTTTTACCATGCCAAACACTGCCTTACTCCAATCCGACTTTTCTGGCCAATCAAAGGGAGTTTATTCCCCTGACTTTCCGATCAGCCCTTCAATTCCATTTAATTACACAGGGGCCCAGCTGAACAATACTAATGTGAGCAATGGTACAAAACTTATGGTGCTTCCGTTTAACACTAGTGTGGAGTTGGTGCTGCAAGACACTAGTATTCTTGGTGCTGAAAGCCATCCTCTTCATCTTCATGGATTCAACTTCTTTGTTGTTGGTCAAGGGTTTGGCAACTTTGACCAGAATTATGACCCTAGGAAGTTCAATCTGGTTGACCCCGTTGAAAGAAACACGGTGAGTGTGCCCTCTGGTGGGTGGGTTGCCATTCGGTTTCTAGCAGATAACCCAGGTGTCTGGTTCATGCATTGCCACTTGGAAATTCACACTAGCTGGGGCTTGAAGATGGCTTGGGTAGTCTTAGATGGAGAGCTTCCCAATCAAAAGTTGCTTCCTCCACCACTGGATCTTCCTAAATGCTGA

Protein Analysis

582

Amino Acids

64.67

Weight (kDa)

8.78

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 39 - 152 2.1e-41 Multicopper oxidase
Cu-oxidase PF00394 165 - 315 3.2e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 433 - 564 1.2e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1181
AccB7I CCANNNNNTGG 1 cut(s) 264
AccBSI CCGCTC 1 cut(s) 988
AciI CCGC 3 cut(s) 876, 986, 1091
AclI AACGTT 2 cut(s) 825, 1218
AclWI GGATC 3 cut(s) 524, 537, 1740
AcoI YGGCCR 1 cut(s) 1267
AcsI RAATTY 2 cut(s) 107, 1647
AcuI CTGAAG 2 cut(s) 555, 706
AfaI GTAC 2 cut(s) 941, 1369
AfiI CCNNNNNNNGG 5 cut(s) 264, 458, 1276, 1580, 1581
AhlI ACTAGT 2 cut(s) 1397, 1424
AjnI CCWGG 4 cut(s) 181, 549, 610, 1615
AjuI GAANNNNNNNTTGG 4 cut(s) 629, 661, 833, 865
AleI CACNNNNGTG 1 cut(s) 1400
AluBI AGCT 7 cut(s) 283, 665, 1010, 1059, 1342, 1659, 1699
AluI AGCT 7 cut(s) 283, 665, 1010, 1059, 1342, 1659, 1699
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 3 cut(s) 524, 537, 1740
AlwNI CAGNNNCTG 2 cut(s) 556, 764
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 9 cut(s) 185, 297, 373, 433, 552, 604, 881, 1267, 1335
ApaI GGGCCC 1 cut(s) 1339
ApeKI GCWGC 6 cut(s) 698, 926, 1153, 1156, 1202, 1414
ApoI RAATTY 2 cut(s) 107, 1647
ArsI GACNNNNNNTTYG 2 cut(s) 1010, 1042
AseI ATTAAT 1 cut(s) 600
AspA2I CCTAGG 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 687
AsuC2I CCSGG 3 cut(s) 292, 809, 810
AsuHPI GGTGA 3 cut(s) 206, 221, 1576
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 4 cut(s) 305, 572, 614, 1181
AvrII CCTAGG 1 cut(s) 1523
BaeGI GKGCMC 2 cut(s) 1339, 1575
BalI TGGCCA 1 cut(s) 1269
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 1339
BbsI GAAGAC 1 cut(s) 677
BbvI GCAGC 6 cut(s) 710, 913, 1165, 1168, 1189, 1401
BccI CCATC 7 cut(s) 266, 296, 434, 509, 1455, 1666, 1685
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 4 cut(s) 183, 551, 612, 1617
BclI TGATCA 2 cut(s) 211, 690
BcnI CCSGG 3 cut(s) 292, 809, 810
BcoDI GTCTC 1 cut(s) 65
BcuI ACTAGT 2 cut(s) 1397, 1424
BfaI CTAG 8 cut(s) 201, 899, 935, 1398, 1425, 1524, 1604, 1656
BfmI CTRYAG 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 1181
BglI GCCNNNNNGGC 1 cut(s) 381
BisI GCNGC 6 cut(s) 699, 927, 1154, 1157, 1203, 1415
BlnI CCTAGG 1 cut(s) 1523
BlsI GCNGC 6 cut(s) 700, 928, 1155, 1158, 1204, 1416
Bme1390I CCNGG 7 cut(s) 183, 292, 551, 612, 809, 810, 1617
Bme18I GGWCC 4 cut(s) 305, 572, 614, 1181
BmeT110I CYCGRG 1 cut(s) 808
BmiI GGNNCC 8 cut(s) 436, 531, 904, 1135, 1183, 1192, 1336, 1337
BmrFI CCNGG 7 cut(s) 183, 292, 551, 612, 809, 810, 1617
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 1053
BpuMI CCSGG 3 cut(s) 292, 809, 810
BsaAI YACGTR 1 cut(s) 889
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 7 cut(s) 182, 610, 807, 808, 1177, 1523, 1615
BsaXI ACNNNNNCTCC 4 cut(s) 972, 987, 1002, 1017
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 458, 1276, 1580, 1581
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 3 cut(s) 568, 898, 1734
Bse3DI GCAATG 4 cut(s) 726, 801, 1369, 1633
BseBI CCWGG 4 cut(s) 183, 551, 612, 1617
BseDI CCNNGG 7 cut(s) 182, 610, 807, 808, 1177, 1523, 1615
BseGI GGATG 2 cut(s) 258, 1447
BseLI CCNNNNNNNGG 5 cut(s) 264, 458, 1276, 1580, 1581
BseMI GCAATG 4 cut(s) 726, 801, 1369, 1633
BseNI ACTGG 3 cut(s) 568, 898, 1734
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 2 cut(s) 1339, 1575
BseXI GCAGC 6 cut(s) 710, 913, 1165, 1168, 1189, 1401
BseYI CCCAGC 5 cut(s) 665, 1006, 1078, 1338, 1659
BshFI GGCC 9 cut(s) 187, 299, 375, 435, 554, 606, 883, 1269, 1337
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 4 cut(s) 291, 308, 339, 809
BslFI GGGAC 2 cut(s) 825, 1073
BslI CCNNNNNNNGG 5 cut(s) 264, 458, 1276, 1580, 1581
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 825, 1073
BsnI GGCC 9 cut(s) 187, 299, 375, 435, 554, 606, 883, 1269, 1337
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 808
Bsp120I GGGCCC 1 cut(s) 1335
Bsp1286I GDGCHC 2 cut(s) 1339, 1575
Bsp143I GATC 5 cut(s) 211, 529, 690, 1302, 1732
BspACI CCGC 3 cut(s) 876, 986, 1091
BspANI GGCC 9 cut(s) 187, 299, 375, 435, 554, 606, 883, 1269, 1337
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 8 cut(s) 436, 531, 904, 1135, 1183, 1192, 1336, 1337
BspMAI CTGCAG 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 1181
BspPI GGATC 3 cut(s) 524, 537, 1740
BspQI GCTCTTC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 988
BsrDI GCAATG 4 cut(s) 726, 801, 1369, 1633
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 3 cut(s) 568, 898, 1734
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 7 cut(s) 182, 610, 807, 808, 1177, 1523, 1615
BssMI GATC 5 cut(s) 211, 529, 690, 1302, 1732
BssT1I CCWWGG 2 cut(s) 1177, 1523
Bst2UI CCWGG 4 cut(s) 183, 551, 612, 1617
Bst4CI ACNGT 3 cut(s) 166, 922, 1564
Bst6I CTCTTC 2 cut(s) 18, 1458
BstBAI YACGTR 1 cut(s) 889
BstC8I GCNNGC 5 cut(s) 88, 386, 399, 1045, 1151
BstDEI CTNAG 2 cut(s) 416, 1687
BstF5I GGATG 2 cut(s) 258, 1447
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 5 cut(s) 214, 532, 693, 1305, 1735
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 5 cut(s) 211, 529, 690, 1302, 1732
BstMWI GCNNNNNNNGC 2 cut(s) 381, 394
BstNI CCWGG 4 cut(s) 183, 551, 612, 1617
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 7 cut(s) 181, 290, 549, 610, 807, 808, 1615
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 2 cut(s) 1339, 1575
BstV1I GCAGC 6 cut(s) 710, 913, 1165, 1168, 1189, 1401
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 529, 1732
BstXI CCANNNNNNTGG 2 cut(s) 269, 1623
BstYI RGATCY 2 cut(s) 529, 1732
BsuRI GGCC 9 cut(s) 187, 299, 375, 435, 554, 606, 883, 1269, 1337
BtsCI GGATG 2 cut(s) 258, 1447
BtsI GCAGTG 1 cut(s) 1239
BtsIMutI CAGTG 4 cut(s) 701, 918, 1239, 1727
BveI ACCTGC 1 cut(s) 1181
Cac8I GCNNGC 5 cut(s) 88, 386, 399, 1045, 1151
CaiI CAGNNNCTG 2 cut(s) 556, 764
CciI TCATGA 1 cut(s) 870
CfoI GCGC 1 cut(s) 687
Cfr10I RCCGGY 1 cut(s) 338
Cfr9I CCCGGG 1 cut(s) 808
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 940, 1368
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviQI GTAC 2 cut(s) 940, 1368
DdeI CTNAG 2 cut(s) 416, 1687
DpnI GATC 5 cut(s) 213, 531, 692, 1304, 1734
DpnII GATC 5 cut(s) 211, 529, 690, 1302, 1732
EaeI YGGCCR 1 cut(s) 1267
Eam1104I CTCTTC 2 cut(s) 18, 1458
EarI CTCTTC 2 cut(s) 18, 1458
Eco130I CCWWGG 2 cut(s) 1177, 1523
Eco24I GRGCYC 1 cut(s) 1339
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 4 cut(s) 305, 572, 614, 1181
Eco57I CTGAAG 2 cut(s) 555, 706
Eco88I CYCGRG 1 cut(s) 808
EcoO109I RGGNCCY 4 cut(s) 553, 614, 1181, 1335
EcoRII CCWGG 4 cut(s) 181, 549, 610, 1615
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 1177, 1523
EcoT22I ATGCAT 1 cut(s) 1635
EcoT38I GRGCYC 1 cut(s) 1339
ErhI CCWWGG 2 cut(s) 1177, 1523
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 2 cut(s) 825, 1073
FauI CCCGC 1 cut(s) 1098
FbaI TGATCA 2 cut(s) 211, 690
Fnu4HI GCNGC 6 cut(s) 699, 927, 1154, 1157, 1203, 1415
FokI GGATG 2 cut(s) 245, 1434
FriOI GRGCYC 1 cut(s) 1339
Fsp4HI GCNGC 6 cut(s) 699, 927, 1154, 1157, 1203, 1415
FspBI CTAG 8 cut(s) 201, 899, 935, 1398, 1425, 1524, 1604, 1656
GlaI GCGC 1 cut(s) 686
GluI GCNGC 6 cut(s) 699, 927, 1154, 1157, 1203, 1415
GsaI CCCAGC 5 cut(s) 669, 1010, 1082, 1342, 1663
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 9 cut(s) 187, 299, 375, 435, 554, 606, 883, 1269, 1337
HapII CCGG 4 cut(s) 291, 308, 339, 809
HgaI GACGC 1 cut(s) 770
HhaI GCGC 1 cut(s) 687
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HincII GTYRAC 3 cut(s) 235, 1102, 1543
HindII GTYRAC 3 cut(s) 235, 1102, 1543
HinfI GANTC 2 cut(s) 274, 1467
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 4 cut(s) 291, 308, 339, 809
HphI GGTGA 3 cut(s) 206, 221, 1576
Hpy166II GTNNAC 4 cut(s) 169, 235, 1102, 1543
Hpy188I TCNGA 3 cut(s) 586, 1258, 1302
Hpy188III TCNNGA 5 cut(s) 533, 649, 871, 935, 1070
Hpy8I GTNNAC 4 cut(s) 169, 235, 1102, 1543
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 3 cut(s) 689, 790, 1320
HpyCH4III ACNGT 3 cut(s) 166, 922, 1564
HpyCH4IV ACGT 4 cut(s) 825, 888, 1086, 1218
HpyCH4V TGCA 8 cut(s) 86, 124, 559, 698, 731, 1031, 1417, 1633
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 394
HpyF3I CTNAG 2 cut(s) 416, 1687
HpySE526I ACGT 4 cut(s) 825, 888, 1086, 1218
HspAI GCGC 1 cut(s) 685
Ksp22I TGATCA 2 cut(s) 211, 690
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 5 cut(s) 211, 529, 690, 1302, 1732
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 993
Lsp1109I GCAGC 6 cut(s) 710, 913, 1165, 1168, 1189, 1401
LweI GCATC 1 cut(s) 577
MaeI CTAG 8 cut(s) 201, 899, 935, 1398, 1425, 1524, 1604, 1656
MaeII ACGT 4 cut(s) 825, 888, 1086, 1218
MaeIII GTNAC 3 cut(s) 130, 160, 889
MalI GATC 5 cut(s) 213, 531, 692, 1304, 1734
MbiI CCGCTC 1 cut(s) 988
MboI GATC 5 cut(s) 211, 529, 690, 1302, 1732
MflI RGATCY 2 cut(s) 529, 1732
MhlI GDGCHC 2 cut(s) 1339, 1575
MlsI TGGCCA 1 cut(s) 1269
MluCI AATT 8 cut(s) 107, 176, 192, 999, 1314, 1324, 1513, 1647
MluNI TGGCCA 1 cut(s) 1269
MmeI TCCRAC 2 cut(s) 142, 1281
Mox20I TGGCCA 1 cut(s) 1269
Mph1103I ATGCAT 1 cut(s) 1635
MscI TGGCCA 1 cut(s) 1269
MseI TTAA 9 cut(s) 225, 234, 440, 600, 654, 774, 1061, 1323, 1392
MslI CAYNNNNRTG 4 cut(s) 227, 267, 1400, 1461
Msp20I TGGCCA 1 cut(s) 1269
MspA1I CMGCKG 1 cut(s) 1342
MspI CCGG 4 cut(s) 291, 308, 339, 809
MspR9I CCNGG 7 cut(s) 183, 292, 551, 612, 809, 810, 1617
MvaI CCWGG 4 cut(s) 183, 551, 612, 1617
MwoI GCNNNNNNNGC 2 cut(s) 381, 394
NciI CCSGG 3 cut(s) 292, 809, 810
NdeII GATC 5 cut(s) 211, 529, 690, 1302, 1732
NlaIV GGNNCC 8 cut(s) 436, 531, 904, 1135, 1183, 1192, 1336, 1337
NmuCI GTSAC 2 cut(s) 130, 889
NsiI ATGCAT 1 cut(s) 1635
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 1400
PaeI GCATGC 1 cut(s) 401
PagI TCATGA 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 274, 1467
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 6 cut(s) 700, 928, 1155, 1158, 1204, 1416
Ppu21I YACGTR 1 cut(s) 889
PpuMI RGGWCCY 2 cut(s) 614, 1181
PshBI ATTAAT 1 cut(s) 600
Psp1406I AACGTT 2 cut(s) 825, 1218
Psp5II RGGWCCY 2 cut(s) 614, 1181
Psp6I CCWGG 4 cut(s) 181, 549, 610, 1615
PspFI CCCAGC 5 cut(s) 665, 1006, 1078, 1338, 1659
PspGI CCWGG 4 cut(s) 181, 549, 610, 1615
PspN4I GGNNCC 8 cut(s) 436, 531, 904, 1135, 1183, 1192, 1336, 1337
PspOMI GGGCCC 1 cut(s) 1335
PspPPI RGGWCCY 2 cut(s) 614, 1181
PstI CTGCAG 1 cut(s) 561
PstNI CAGNNNCTG 2 cut(s) 556, 764
PsuI RGATCY 2 cut(s) 529, 1732
PvuII CAGCTG 1 cut(s) 1342
RsaI GTAC 2 cut(s) 941, 1369
RsaNI GTAC 2 cut(s) 940, 1368
RseI CAYNNNNRTG 4 cut(s) 227, 267, 1400, 1461
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 9 cut(s) 225, 234, 440, 600, 654, 774, 1061, 1323, 1392
SatI GCNGC 6 cut(s) 699, 927, 1154, 1157, 1203, 1415
Sau3AI GATC 5 cut(s) 211, 529, 690, 1302, 1732
ScrFI CCNGG 7 cut(s) 183, 292, 551, 612, 809, 810, 1617
SduI GDGCHC 2 cut(s) 1339, 1575
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 557
SinI GGWCC 4 cut(s) 305, 572, 614, 1181
SmaI CCCGGG 1 cut(s) 810
SmiMI CAYNNNNRTG 4 cut(s) 227, 267, 1400, 1461
SpeI ACTAGT 2 cut(s) 1397, 1424
SphI GCATGC 1 cut(s) 401
Sse9I AATT 8 cut(s) 107, 176, 192, 999, 1314, 1324, 1513, 1647
SsiI CCGC 3 cut(s) 876, 986, 1091
SspMI CTAG 8 cut(s) 201, 899, 935, 1398, 1425, 1524, 1604, 1656
StyD4I CCNGG 7 cut(s) 181, 290, 549, 610, 807, 808, 1615
StyI CCWWGG 2 cut(s) 1177, 1523
TaaI ACNGT 3 cut(s) 166, 922, 1564
TaiI ACGT 4 cut(s) 828, 891, 1089, 1221
TaqI TCGA 4 cut(s) 190, 277, 753, 783
TasI AATT 8 cut(s) 107, 176, 192, 999, 1314, 1324, 1513, 1647
TfiI GAWTC 2 cut(s) 274, 1467
Tru1I TTAA 9 cut(s) 225, 234, 440, 600, 654, 774, 1061, 1323, 1392
Tru9I TTAA 9 cut(s) 225, 234, 440, 600, 654, 774, 1061, 1323, 1392
TscAI CASTG 4 cut(s) 708, 925, 1246, 1734
TseFI GTSAC 2 cut(s) 130, 889
TseI GCWGC 6 cut(s) 698, 926, 1153, 1156, 1202, 1414
Tsp45I GTSAC 2 cut(s) 130, 889
TspDTI ATGAA 5 cut(s) 37, 399, 1445, 1451, 1618
TspGWI ACGGA 2 cut(s) 186, 1377
TspMI CCCGGG 1 cut(s) 808
TspRI CASTG 4 cut(s) 708, 925, 1246, 1734
Van91I CCANNNNNTGG 1 cut(s) 264
VpaK11BI GGWCC 4 cut(s) 305, 572, 614, 1181
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 2 cut(s) 107, 1647
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 1184
XmaI CCCGGG 1 cut(s) 808
XmaJI CCTAGG 1 cut(s) 1523
XspI CTAG 8 cut(s) 201, 899, 935, 1398, 1425, 1524, 1604, 1656
Zsp2I ATGCAT 1 cut(s) 1635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.