Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000610

Physical Location & Seq

Genomic Coordinates Forward (+)

2156190 .. 2157337

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1015000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGGTTTACAAAGGGGGTTTCCCAGATTTTCCACCTGTGTGCAACTGTGGAATGCGCTTTTCAAGGGACGAGCTTGGTCACTAGGATTGATCATCCAAAGCATTTGCATGGGTTTAACTTCTACGTTGTTGGACGAGGGTTCGGGAATTTTGATCGAGATAAGGAACCAGTGTACTACAATTTAATTGATCCTCCTCATAAGAACACTGTGACTGTGCCCATAAGGGGATGGGTTGTCATCAGATTCCAAGCCAATAATCCCGGAGTCTGGTTTCTACACTACCATTTAGAGCGTCACCTAACATGGAGAATGAACACCGTCTTCATTCTAAAGAATGGAAAGCACAATAAAGAAAAGTTGCTGCCTCTCCCACCGAGAATGCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

131

Amino Acids

15.15

Weight (kDa)

9.88

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	15 - 113	7.7e-31	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60020 AT5G60020 AT5G60020
fragaria_vesca	FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica	MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica	Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis	pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis	RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata	RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora	Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa	Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha	Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana	Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	227, 270
AgsI	TTSAA	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
AlwI	GGATC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	316
BplI	GAGNNNNNCTC	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 270
Bse1I	ACTGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	94, 236
BseLI	CCNNNNNNNGG	2 cut(s)	227, 270
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	227, 270
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	2 cut(s)	59, 387
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	91, 154, 190
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	3 cut(s)	91, 154, 190
Bst4CI	ACNGT	4 cut(s)	49, 211, 217, 322
BstF5I	GGATG	2 cut(s)	94, 236
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	94, 157, 193
BstMBI	GATC	3 cut(s)	91, 154, 190
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	94, 236
BtsIMutI	CAGTG	2 cut(s)	177, 207
CfoI	GCGC	1 cut(s)	59
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	110, 306
CviJI	RGCY	2 cut(s)	75, 254
CviKI_1	RGCY	2 cut(s)	75, 254
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	3 cut(s)	93, 156, 192
DpnII	GATC	3 cut(s)	91, 154, 190
FaeI	CATG	2 cut(s)	113, 309
FaiI	YATR	4 cut(s)	111, 201, 224, 307
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	2 cut(s)	109, 305
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	2 cut(s)	81, 243
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	365
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	113, 309
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	246, 267
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	9, 175
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	145, 158
Hpy8I	GTNNAC	2 cut(s)	9, 175
HpyCH4III	ACNGT	4 cut(s)	49, 211, 217, 322
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	44, 109
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	113, 309
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	91, 154, 190
LpnPI	CCDG	5 cut(s)	38, 50, 183, 256, 277
Lsp1109I	GCAGC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	79, 211, 296
MalI	GATC	3 cut(s)	93, 156, 192
MboI	GATC	3 cut(s)	91, 154, 190
MboII	GAAGA	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	148, 181, 186
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	131, 204, 207, 378
MseI	TTAA	3 cut(s)	117, 185, 391
MslI	CAYNNNNRTG	2 cut(s)	39, 108
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	2 cut(s)	59, 387
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	91, 154, 190
NlaIII	CATG	2 cut(s)	113, 309
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	3 cut(s)	79, 211, 296
OliI	CACNNNNGTG	1 cut(s)	39
PctI	GAATGC	2 cut(s)	59, 387
PfeI	GAWTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	39, 108
SaqAI	TTAA	3 cut(s)	117, 185, 391
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	3 cut(s)	91, 154, 190
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	4 cut(s)	39, 77, 129, 303
SmiMI	CAYNNNNRTG	2 cut(s)	39, 108
Sse9I	AATT	3 cut(s)	148, 181, 186
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	49, 211, 217, 322
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	157
TasI	AATT	3 cut(s)	148, 181, 186
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	117, 185, 391
Tru9I	TTAA	3 cut(s)	117, 185, 391
TscAI	CASTG	2 cut(s)	177, 214
TseFI	GTSAC	3 cut(s)	79, 211, 296
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	3 cut(s)	79, 211, 296
TspDTI	ATGAA	2 cut(s)	316, 329
TspRI	CASTG	2 cut(s)	177, 214
XapI	RAATTY	1 cut(s)	148
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.