MD03G1106600.v1.1

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000610
Physical Location & Seq
Forward (+)
9179028 .. 9181970
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1106600.v1.1.491

Sequence Viewer

Length: 1740 bp
ATGGGTGTTCATCTTCTTTTAGCTTCACCATTTCTTAGGCTCTTTCTCTTCTCTTTCGTAATGTGTCTCATGCATCAGCATGCTCTTGCAGGCATAACCAAGCACTACAAGTTTGAAATCAAACAACAGAAGGTGACAAGACTCTGCCACACAAAAAGCATAGTAACAGTGAATGGGCAGTTTCCTGGGCCGAAAATCATTGCTAGAGAGGGTGATCAACTCCTAATTAAAGTCGTTAACCATGTCCAAAACAACATCTCTATCCAGCACGGCATTCGACAGCTTCAATCGGGGTGGGCTGATGGTCCGGCATATGTGACCCAATGTCCCATACAAACAGGCAATAGTTATGTCTACAACTTCACCATTACTGGCCAAAGAGGCACTCTTTTTTGGCATGCTCACATTTCATGGCTCAGATCAACTGTTTATGGGCCCTTAATCATACTTCCCAAGCACAGTGTTCCGTACCCTTTCACTAAACCTTACAAGGAGGTTCCAATTATTTTTGGTGAGTGGTGGAATGCAGATCCTGAAGCCATAATTAGCCAGGCCTTGCAAACAGGTGGAGGGCCGAATGTCTCTGATGCTTATACCATTAACGGATTCCCGGGGCCCTTATACAATTGTTCTGCCAAAGATGCATTCAAGCTGAAGGTTCAACCTGGCAAGACCTATCTTCTCCGGCTTATCAACGCAGCACTCAATGACGAGCTTTTCTTCAGCATTGCAAATCACACTCTCAAAGTAGTAGAAGCCGATGCCATTTATGTCAAACCCTTTGAGACTCGCACAATTCTCATTGCCCCCGGCCAAACCACAAATGTTCTTCTGAAGACCAAACCCAACTTCCCTAATGCCACATTTTTCATGACTGCTAGGCCATTTGTGACTGGTCAAGGCACATTTGACAACACCACAGTTGCTGGCATTCTAGAGTACGATTCGCCATCTAAAACCAAAACCCTAAACACGAAGAGACTTCCGCTGTTGAAACCCAACCTCCCCGCCCTAAACGACACATCATTCGCAACCAAATTCGCCAACAAACTTCGTAGTTTAAACACCCCACAATTCCCAGCTAATGTCCCTCAAAAAGTTGATAAGCACTTTTTCTTCACCATAGGCCTTGGAACCAACCCTTGTAGCCAAAACAACCAAAGATGCCAAGGACCCAATGGGACAATGTTTGCAGCCTCAGTTAACAACATTTCTTTTGCAATGCCAAACACTGCCTTGCTACAATCCCATTTTTCTGGCCAGTCAAGTGGGGTCTACACTCCTGACTTCCCAACCAATCCCATAACGCCATTTAACTATACTGGCCCCCCACCAAATGATACCATGGTGAGCAATGGGACAAAGCTGATGGTGCTGCCATTTAATTCTAGGGTGGAGCTGGTGATGCAGGACACTAGCATTCTTGGTGCTGAGAGCCATCCTCTGCACCTTCATGGGTTCAATTTCTTTGTTGTGGGTCAAGGATTCGGGAACTTTGACCCGAATAAGGACCCTAAAAAGTTCAATCTGGTTGACCCTGTTGAGAGGAACACTGTGGGTGTGCCCTCTGGTGGGTGGGTTGCTATCCGCTTTCTGGCTGATAATCCAGGAGTATGGTTTATGCATTGCCACCTGGAGATCCACACAAGCTGGGGCTTGAAGATGGGTTGGGTAGTCTTGGATGGCAAGCTTCCCAATCAAAAACTGCTCCCTCCCCCTGCAGATCTTCCCAAATGCTGA

Protein Analysis

580

Amino Acids

64.16

Weight (kDa)

9.38

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 40 - 153 3e-37 Multicopper oxidase
Cu-oxidase PF00394 165 - 316 3.7e-43 Multicopper oxidase
Cu-oxidase_2 PF07731 430 - 561 4.9e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 354, 1275
AciI CCGC 3 cut(s) 986, 1008, 1588
AclWI GGATC 2 cut(s) 524, 1633
AcoI YGGCCR 3 cut(s) 373, 811, 1258
AcsI RAATTY 1 cut(s) 1037
AcuI CTGAAG 4 cut(s) 555, 674, 706, 854
AfaI GTAC 2 cut(s) 470, 941
AfiI CCNNNNNNNGG 4 cut(s) 1507, 1571, 1572, 1594
AgsI TTSAA 8 cut(s) 116, 287, 649, 662, 994, 1462, 1525, 1660
AhdI GACNNNNNGTC 1 cut(s) 324
AjnI CCWGG 5 cut(s) 184, 549, 664, 1606, 1632
AjuI GAANNNNNNNTTGG 4 cut(s) 629, 661, 833, 865
AluBI AGCT 9 cut(s) 23, 283, 652, 715, 1082, 1366, 1399, 1650, 1690
AluI AGCT 9 cut(s) 23, 283, 652, 715, 1082, 1366, 1399, 1650, 1690
Alw26I GTCTC 4 cut(s) 71, 586, 779, 973
AlwI GGATC 2 cut(s) 524, 1633
AlwNI CAGNNNCTG 2 cut(s) 533, 926
Ama87I CYCGRG 1 cut(s) 610
ApaI GGGCCC 2 cut(s) 438, 618
ApeKI GCWGC 3 cut(s) 698, 1193, 1375
ApoI RAATTY 1 cut(s) 1037
ArsI GACNNNNNNTTYG 2 cut(s) 1010, 1042
AsuC2I CCSGG 3 cut(s) 611, 612, 810
AsuHPI GGTGA 8 cut(s) 18, 145, 224, 355, 524, 1111, 1360, 1414
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 3 cut(s) 305, 1172, 1510
BaeGI GKGCMC 3 cut(s) 438, 618, 1566
BaeI ACNNNNGTAYC 2 cut(s) 1332, 1365
BalI TGGCCA 2 cut(s) 375, 1260
BanII GRGCYC 2 cut(s) 438, 618
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 3 cut(s) 710, 1205, 1362
BccI CCATC 6 cut(s) 296, 958, 1363, 1446, 1657, 1676
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 5 cut(s) 186, 551, 666, 1608, 1634
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 3 cut(s) 611, 612, 810
BcoDI GTCTC 4 cut(s) 71, 586, 779, 973
BfaI CTAG 5 cut(s) 204, 879, 935, 1389, 1416
BfmI CTRYAG 1 cut(s) 1719
BglI GCCNNNNNGGC 1 cut(s) 381
BglII AGATCT 1 cut(s) 1723
BisI GCNGC 3 cut(s) 699, 1194, 1376
BlsI GCNGC 3 cut(s) 700, 1195, 1377
Bme1390I CCNGG 8 cut(s) 186, 551, 611, 612, 666, 810, 1608, 1634
Bme18I GGWCC 3 cut(s) 305, 1172, 1510
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 610
BmiI GGNNCC 8 cut(s) 436, 498, 615, 616, 1135, 1174, 1327, 1512
BmrFI CCNGG 8 cut(s) 186, 551, 611, 612, 666, 810, 1608, 1634
BmsI GCATC 6 cut(s) 82, 577, 631, 751, 1154, 1395
BpiI GAAGAC 1 cut(s) 842
BplI GAGNNNNNCTC 2 cut(s) 1426, 1458
BpmI CTGGAG 1 cut(s) 1655
BpuMI CCSGG 3 cut(s) 611, 612, 810
BsaJI CCNNGG 7 cut(s) 185, 610, 611, 808, 1129, 1168, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 987, 1017
Bsc4I CCNNNNNNNGG 4 cut(s) 1507, 1571, 1572, 1594
Bse1I ACTGG 4 cut(s) 376, 898, 1261, 1327
Bse3DI GCAATG 6 cut(s) 198, 726, 801, 1227, 1360, 1624
BseBI CCWGG 5 cut(s) 186, 551, 666, 1608, 1634
BseDI CCNNGG 7 cut(s) 185, 610, 611, 808, 1129, 1168, 1344
BseGI GGATG 2 cut(s) 1438, 1687
BseLI CCNNNNNNNGG 4 cut(s) 1507, 1571, 1572, 1594
BseMI GCAATG 6 cut(s) 198, 726, 801, 1227, 1360, 1624
BseMII CTCAG 3 cut(s) 430, 1212, 1422
BseNI ACTGG 4 cut(s) 376, 898, 1261, 1327
BseSI GKGCMC 3 cut(s) 438, 618, 1566
BseXI GCAGC 3 cut(s) 710, 1205, 1362
BseYI CCCAGC 2 cut(s) 1078, 1650
BsgI GTGCAG 1 cut(s) 1430
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 4 cut(s) 308, 611, 685, 810
BslFI GGGAC 4 cut(s) 312, 1073, 1195, 1372
BslI CCNNNNNNNGG 4 cut(s) 1507, 1571, 1572, 1594
BsmAI GTCTC 4 cut(s) 71, 586, 779, 973
BsmFI GGGAC 4 cut(s) 312, 1073, 1195, 1372
BsmI GAATGC 5 cut(s) 273, 529, 644, 930, 1419
BsoBI CYCGRG 1 cut(s) 610
Bsp120I GGGCCC 2 cut(s) 434, 614
Bsp1286I GDGCHC 3 cut(s) 438, 618, 1566
Bsp143I GATC 5 cut(s) 214, 419, 529, 1638, 1723
Bsp19I CCATGG 1 cut(s) 1344
BspACI CCGC 3 cut(s) 986, 1008, 1588
BspCNI CTCAG 3 cut(s) 429, 1211, 1423
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 8 cut(s) 436, 498, 615, 616, 1135, 1174, 1327, 1512
BspMAI CTGCAG 1 cut(s) 1723
BspPI GGATC 2 cut(s) 524, 1633
BsrDI GCAATG 6 cut(s) 198, 726, 801, 1227, 1360, 1624
BsrI ACTGG 4 cut(s) 376, 898, 1261, 1327
BssECI CCNNGG 7 cut(s) 185, 610, 611, 808, 1129, 1168, 1344
BssMI GATC 5 cut(s) 214, 419, 529, 1638, 1723
BssT1I CCWWGG 3 cut(s) 1129, 1168, 1344
Bst2UI CCWGG 5 cut(s) 186, 551, 666, 1608, 1634
Bst4CI ACNGT 5 cut(s) 169, 427, 461, 922, 1555
Bst6I CTCTTC 2 cut(s) 53, 971
BstC8I GCNNGC 5 cut(s) 81, 91, 399, 928, 1688
BstDEI CTNAG 4 cut(s) 35, 416, 1198, 1431
BstDSI CCRYGG 1 cut(s) 1344
BstF5I GGATG 2 cut(s) 1438, 1687
BstKTI GATC 5 cut(s) 217, 422, 532, 1641, 1726
BstMAI GTCTC 4 cut(s) 71, 586, 779, 973
BstMBI GATC 5 cut(s) 214, 419, 529, 1638, 1723
BstMWI GCNNNNNNNGC 4 cut(s) 381, 641, 1372, 1405
BstNI CCWGG 5 cut(s) 186, 551, 666, 1608, 1634
BstNSI RCATGY 2 cut(s) 83, 401
BstSCI CCNGG 8 cut(s) 184, 549, 609, 610, 664, 808, 1606, 1632
BstSFI CTRYAG 1 cut(s) 1719
BstSLI GKGCMC 3 cut(s) 438, 618, 1566
BstV1I GCAGC 3 cut(s) 710, 1205, 1362
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 3 cut(s) 529, 1638, 1723
BstXI CCANNNNNNTGG 3 cut(s) 1256, 1268, 1614
BstYI RGATCY 3 cut(s) 529, 1638, 1723
BtgI CCRYGG 1 cut(s) 1344
BtsCI GGATG 2 cut(s) 1438, 1687
BtsI GCAGTG 1 cut(s) 1230
BtsIMutI CAGTG 4 cut(s) 174, 466, 1230, 1551
Cac8I GCNNGC 5 cut(s) 81, 91, 399, 928, 1688
CaiI CAGNNNCTG 2 cut(s) 533, 926
CciI TCATGA 1 cut(s) 870
Cfr9I CCCGGG 1 cut(s) 610
Csp6I GTAC 2 cut(s) 469, 940
CspCI CAANNNNNGTGG 2 cut(s) 275, 310
CviAII CATG 8 cut(s) 70, 80, 242, 398, 411, 871, 1345, 1454
CviQI GTAC 2 cut(s) 469, 940
DdeI CTNAG 4 cut(s) 35, 416, 1198, 1431
DpnI GATC 5 cut(s) 216, 421, 531, 1640, 1725
DpnII GATC 5 cut(s) 214, 419, 529, 1638, 1723
DraI TTTAAA 1 cut(s) 1062
DriI GACNNNNNGTC 1 cut(s) 324
EaeI YGGCCR 3 cut(s) 373, 811, 1258
Eam1104I CTCTTC 2 cut(s) 53, 971
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 2 cut(s) 53, 971
Eco130I CCWWGG 3 cut(s) 1129, 1168, 1344
Eco147I AGGCCT 2 cut(s) 554, 1128
Eco24I GRGCYC 2 cut(s) 438, 618
Eco47I GGWCC 3 cut(s) 305, 1172, 1510
Eco57I CTGAAG 4 cut(s) 555, 674, 706, 854
Eco88I CYCGRG 1 cut(s) 610
EcoO109I RGGNCCY 5 cut(s) 435, 614, 615, 1172, 1510
EcoRII CCWGG 5 cut(s) 184, 549, 664, 1606, 1632
EcoT14I CCWWGG 3 cut(s) 1129, 1168, 1344
EcoT22I ATGCAT 3 cut(s) 75, 646, 1626
EcoT38I GRGCYC 2 cut(s) 438, 618
ErhI CCWWGG 3 cut(s) 1129, 1168, 1344
FaeI CATG 8 cut(s) 73, 83, 245, 401, 414, 874, 1348, 1457
FaqI GGGAC 4 cut(s) 312, 1073, 1195, 1372
FatI CATG 8 cut(s) 69, 79, 241, 397, 410, 870, 1344, 1453
FauI CCCGC 1 cut(s) 1015
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 354, 1275
Fnu4HI GCNGC 3 cut(s) 699, 1194, 1376
FokI GGATG 2 cut(s) 1425, 1694
FriOI GRGCYC 2 cut(s) 438, 618
Fsp4HI GCNGC 3 cut(s) 699, 1194, 1376
FspBI CTAG 5 cut(s) 204, 879, 935, 1389, 1416
GluI GCNGC 3 cut(s) 699, 1194, 1376
GsaI CCCAGC 2 cut(s) 1082, 1654
GsuI CTGGAG 1 cut(s) 1655
HapII CCGG 4 cut(s) 308, 611, 685, 810
Hin1II CATG 8 cut(s) 73, 83, 245, 401, 414, 874, 1348, 1457
HincII GTYRAC 3 cut(s) 238, 1204, 1534
HindII GTYRAC 3 cut(s) 238, 1204, 1534
HindIII AAGCTT 1 cut(s) 1688
HinfI GANTC 5 cut(s) 141, 606, 787, 944, 1485
HpaI GTTAAC 2 cut(s) 238, 1204
HpaII CCGG 4 cut(s) 308, 611, 685, 810
HphI GGTGA 8 cut(s) 18, 145, 224, 355, 524, 1111, 1360, 1414
Hpy166II GTNNAC 5 cut(s) 238, 355, 1204, 1276, 1534
Hpy188I TCNGA 3 cut(s) 419, 586, 834
Hpy188III TCNNGA 5 cut(s) 533, 871, 935, 1283, 1489
Hpy8I GTNNAC 5 cut(s) 238, 355, 1204, 1276, 1534
HpyAV CCTTC 3 cut(s) 124, 649, 1460
HpyCH4III ACNGT 5 cut(s) 169, 427, 461, 922, 1555
HpyF10VI GCNNNNNNNGC 4 cut(s) 381, 641, 1372, 1405
HpyF3I CTNAG 4 cut(s) 35, 416, 1198, 1431
Hsp92II CATG 8 cut(s) 73, 83, 245, 401, 414, 874, 1348, 1457
Ksp22I TGATCA 1 cut(s) 214
KspAI GTTAAC 2 cut(s) 238, 1204
Kzo9I GATC 5 cut(s) 214, 419, 529, 1638, 1723
LmnI GCTCC 2 cut(s) 1396, 1713
Lsp1109I GCAGC 3 cut(s) 710, 1205, 1362
LweI GCATC 6 cut(s) 82, 577, 631, 751, 1154, 1395
MaeI CTAG 5 cut(s) 204, 879, 935, 1389, 1416
MaeIII GTNAC 4 cut(s) 133, 163, 316, 889
MalI GATC 5 cut(s) 216, 421, 531, 1640, 1725
MboI GATC 5 cut(s) 214, 419, 529, 1638, 1723
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 3 cut(s) 529, 1638, 1723
MhlI GDGCHC 3 cut(s) 438, 618, 1566
MlsI TGGCCA 2 cut(s) 375, 1260
MluCI AATT 9 cut(s) 225, 501, 543, 625, 795, 1037, 1073, 1384, 1462
MluNI TGGCCA 2 cut(s) 375, 1260
MlyI GAGTC 2 cut(s) 135, 781
Mox20I TGGCCA 2 cut(s) 375, 1260
Mph1103I ATGCAT 3 cut(s) 75, 646, 1626
MscI TGGCCA 2 cut(s) 375, 1260
MseI TTAA 8 cut(s) 228, 237, 440, 600, 1061, 1203, 1314, 1383
MslI CAYNNNNRTG 2 cut(s) 78, 1452
Msp20I TGGCCA 2 cut(s) 375, 1260
MspA1I CMGCKG 1 cut(s) 988
MspI CCGG 4 cut(s) 308, 611, 685, 810
MspR9I CCNGG 8 cut(s) 186, 551, 611, 612, 666, 810, 1608, 1634
MssI GTTTAAAC 1 cut(s) 1062
MunI CAATTG 1 cut(s) 625
Mva1269I GAATGC 5 cut(s) 273, 529, 644, 930, 1419
MvaI CCWGG 5 cut(s) 186, 551, 666, 1608, 1634
MwoI GCNNNNNNNGC 4 cut(s) 381, 641, 1372, 1405
NciI CCSGG 3 cut(s) 611, 612, 810
NcoI CCATGG 1 cut(s) 1344
NdeI CATATG 1 cut(s) 313
NdeII GATC 5 cut(s) 214, 419, 529, 1638, 1723
NlaIII CATG 8 cut(s) 73, 83, 245, 401, 414, 874, 1348, 1457
NlaIV GGNNCC 8 cut(s) 436, 498, 615, 616, 1135, 1174, 1327, 1512
NmuCI GTSAC 3 cut(s) 133, 316, 889
NsiI ATGCAT 3 cut(s) 75, 646, 1626
NspI RCATGY 2 cut(s) 83, 401
PaeI GCATGC 2 cut(s) 83, 401
PagI TCATGA 1 cut(s) 870
PceI AGGCCT 2 cut(s) 554, 1128
PctI GAATGC 5 cut(s) 273, 529, 644, 930, 1419
PfeI GAWTC 3 cut(s) 606, 944, 1485
PfoI TCCNGGA 1 cut(s) 1606
PkrI GCNGC 3 cut(s) 700, 1195, 1377
PleI GAGTC 2 cut(s) 135, 781
PmeI GTTTAAAC 1 cut(s) 1062
PpsI GAGTC 2 cut(s) 135, 781
PpuMI RGGWCCY 2 cut(s) 1172, 1510
Psp5II RGGWCCY 2 cut(s) 1172, 1510
Psp6I CCWGG 5 cut(s) 184, 549, 664, 1606, 1632
PspFI CCCAGC 2 cut(s) 1078, 1650
PspGI CCWGG 5 cut(s) 184, 549, 664, 1606, 1632
PspN4I GGNNCC 8 cut(s) 436, 498, 615, 616, 1135, 1174, 1327, 1512
PspOMI GGGCCC 2 cut(s) 434, 614
PspPPI RGGWCCY 2 cut(s) 1172, 1510
PstI CTGCAG 1 cut(s) 1723
PstNI CAGNNNCTG 2 cut(s) 533, 926
PsuI RGATCY 3 cut(s) 529, 1638, 1723
RsaI GTAC 2 cut(s) 470, 941
RsaNI GTAC 2 cut(s) 469, 940
RseI CAYNNNNRTG 2 cut(s) 78, 1452
SaqAI TTAA 8 cut(s) 228, 237, 440, 600, 1061, 1203, 1314, 1383
SatI GCNGC 3 cut(s) 699, 1194, 1376
Sau3AI GATC 5 cut(s) 214, 419, 529, 1638, 1723
SchI GAGTC 2 cut(s) 135, 781
ScrFI CCNGG 8 cut(s) 186, 551, 611, 612, 666, 810, 1608, 1634
SduI GDGCHC 3 cut(s) 438, 618, 1566
SfaNI GCATC 6 cut(s) 82, 577, 631, 751, 1154, 1395
SfcI CTRYAG 1 cut(s) 1719
SinI GGWCC 3 cut(s) 305, 1172, 1510
SmaI CCCGGG 1 cut(s) 612
SmiMI CAYNNNNRTG 2 cut(s) 78, 1452
SphI GCATGC 2 cut(s) 83, 401
Sse9I AATT 9 cut(s) 225, 501, 543, 625, 795, 1037, 1073, 1384, 1462
SseBI AGGCCT 2 cut(s) 554, 1128
SsiI CCGC 3 cut(s) 986, 1008, 1588
SspMI CTAG 5 cut(s) 204, 879, 935, 1389, 1416
StuI AGGCCT 2 cut(s) 554, 1128
StyD4I CCNGG 8 cut(s) 184, 549, 609, 610, 664, 808, 1606, 1632
StyI CCWWGG 3 cut(s) 1129, 1168, 1344
TaaI ACNGT 5 cut(s) 169, 427, 461, 922, 1555
TaqI TCGA 1 cut(s) 277
TasI AATT 9 cut(s) 225, 501, 543, 625, 795, 1037, 1073, 1384, 1462
TfiI GAWTC 3 cut(s) 606, 944, 1485
Tru1I TTAA 8 cut(s) 228, 237, 440, 600, 1061, 1203, 1314, 1383
Tru9I TTAA 8 cut(s) 228, 237, 440, 600, 1061, 1203, 1314, 1383
TscAI CASTG 4 cut(s) 174, 466, 1237, 1558
TseFI GTSAC 3 cut(s) 133, 316, 889
TseI GCWGC 3 cut(s) 698, 1193, 1375
Tsp45I GTSAC 3 cut(s) 133, 316, 889
TspDTI ATGAA 3 cut(s) 399, 859, 1442
TspGWI ACGGA 2 cut(s) 456, 618
TspMI CCCGGG 1 cut(s) 610
TspRI CASTG 4 cut(s) 174, 466, 1237, 1558
VpaK11BI GGWCC 3 cut(s) 305, 1172, 1510
XapI RAATTY 1 cut(s) 1037
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 2 cut(s) 83, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 1175
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 2 cut(s) 354, 1275
XspI CTAG 5 cut(s) 204, 879, 935, 1389, 1416
Zsp2I ATGCAT 3 cut(s) 75, 646, 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.