FvH4_2g09062

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000610
Physical Location & Seq
Forward (+)
7988464 .. 7989750
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09062.t1

Sequence Viewer

Length: 471 bp
ATGGTGGCTTCATCGAAGACTGCAGCTAAGTCCGACTGGAGGAGCAACGAAGGTGCACCACTCACTGCCAACCTTGGGACTAACCTAGGCACAAGGCTAAGCAAGATAGCCTTTAAATCGACAGTTGAGTTGGTATTACAAGATACCAATCTTCTGACTGTGGAATCACATCCTTTCCATCTTCATGGTTACAATTTCTTCGTTGTTGGGACTGGAGTTGGGAACTTTGACCCCAAGAAGGACCCGGCTAAGTTTAACTTGGTGGATCCTCCTGAAAGAAACACAGTTGGTGTTCCTACCGGTGGTTGGGCTGCCATATGGTTCAGGGCTGATAATCCAGGGGTGTGGTTCATGCACTGTCACTTGGAGCTGCATACTAGCTGGGGTTTGAAGACTGCATTTGTGGTGGAAAACGGGAAAGGGTCAGATCAATCTGTCTTGCCTCCACCTAAAGACCTTCCACCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

157

Amino Acids

16.97

Weight (kDa)

7.01

Isoelectric Point (pI)

23.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 25 - 139 2.1e-40 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 260, 273
AfiI CCNNNNNNNGG 5 cut(s) 39, 75, 238, 302, 306
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 3 cut(s) 26, 370, 381
AluI AGCT 3 cut(s) 26, 370, 381
Alw21I GWGCWC 1 cut(s) 58
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 2 cut(s) 260, 273
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 23, 311, 370
AsiGI ACCGGT 1 cut(s) 299
AspA2I CCTAGG 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 241
AvrII CCTAGG 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 58
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 2 cut(s) 23, 398
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 35, 298, 357
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 86, 378
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 3 cut(s) 24, 312, 371
BlnI CCTAGG 1 cut(s) 85
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 3 cut(s) 25, 313, 372
Bme1390I CCNGG 2 cut(s) 245, 339
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 243, 267
BmrFI CCNGG 2 cut(s) 245, 339
BpiI GAAGAC 2 cut(s) 23, 398
BpmI CTGGAG 2 cut(s) 58, 234
Bpu1102I GCTNAGC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 73, 85, 338
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 75, 238, 302, 306
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 41, 217
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 73, 85, 338
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 5 cut(s) 39, 75, 238, 302, 306
BseNI ACTGG 2 cut(s) 41, 217
BseRI GAGGAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 3 cut(s) 35, 298, 357
BseYI CCCAGC 1 cut(s) 381
BshTI ACCGGT 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 245, 300
BslFI GGGAC 2 cut(s) 91, 223
BslI CCNNNNNNNGG 5 cut(s) 39, 75, 238, 302, 306
BsmFI GGGAC 2 cut(s) 91, 223
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 265, 427
Bsp1720I GCTNAGC 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 243, 267
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 2 cut(s) 260, 273
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 41, 217
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 73, 85, 338
BssMI GATC 2 cut(s) 265, 427
BssT1I CCWWGG 2 cut(s) 73, 85
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 4 cut(s) 124, 160, 286, 359
BstDEI CTNAG 3 cut(s) 27, 98, 249
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 268, 430
BstMBI GATC 2 cut(s) 265, 427
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 243, 337
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 35, 298, 357
BstV2I GAAGAC 2 cut(s) 23, 398
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 2 cut(s) 185, 345
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 355
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 241
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 2 cut(s) 185, 352
CviJI RGCY 9 cut(s) 8, 26, 97, 110, 248, 311, 329, 370, 381
CviKI_1 RGCY 9 cut(s) 8, 26, 97, 110, 248, 311, 329, 370, 381
DdeI CTNAG 3 cut(s) 27, 98, 249
DpnI GATC 2 cut(s) 267, 429
DpnII GATC 2 cut(s) 265, 427
DraI TTTAAA 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 73, 85
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 73, 85
ErhI CCWWGG 2 cut(s) 73, 85
FaeI CATG 2 cut(s) 188, 355
FaiI YATR 5 cut(s) 186, 317, 319, 353, 375
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 242, 274
FaqI GGGAC 2 cut(s) 91, 223
FatI CATG 2 cut(s) 184, 351
FauNDI CATATG 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 24, 312, 371
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 3 cut(s) 24, 312, 371
FspBI CTAG 2 cut(s) 86, 378
GluI GCNGC 3 cut(s) 24, 312, 371
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 2 cut(s) 58, 234
HapII CCGG 2 cut(s) 245, 300
Hin1II CATG 2 cut(s) 188, 355
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 245, 300
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 3 cut(s) 34, 156, 427
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 44, 232, 467
HpyCH4III ACNGT 4 cut(s) 124, 160, 286, 359
HpyCH4V TGCA 5 cut(s) 23, 56, 355, 373, 398
HpyF3I CTNAG 3 cut(s) 27, 98, 249
Hsp92II CATG 2 cut(s) 188, 355
Kzo9I GATC 2 cut(s) 265, 427
LmnI GCTCC 2 cut(s) 42, 367
LpnPI CCDG 9 cut(s) 22, 198, 258, 285, 310, 313, 324, 351, 367
Lsp1109I GCAGC 3 cut(s) 35, 298, 357
MaeI CTAG 2 cut(s) 86, 378
MaeIII GTNAC 2 cut(s) 188, 359
MalI GATC 2 cut(s) 267, 429
MboI GATC 2 cut(s) 265, 427
MboII GAAGA 5 cut(s) 28, 143, 173, 190, 403
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 33, 279, 453
MseI TTAA 3 cut(s) 114, 255, 469
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 2 cut(s) 245, 300
MspR9I CCNGG 2 cut(s) 245, 339
MvaI CCWGG 1 cut(s) 339
NciI CCSGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 317
NdeII GATC 2 cut(s) 265, 427
NlaIII CATG 2 cut(s) 188, 355
NlaIV GGNNCC 2 cut(s) 243, 267
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 3 cut(s) 25, 313, 372
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 243, 267
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 3 cut(s) 114, 255, 469
SatI GCNGC 3 cut(s) 24, 312, 371
Sau3AI GATC 2 cut(s) 265, 427
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 245, 339
SduI GDGCHC 1 cut(s) 58
SetI ASST 9 cut(s) 28, 55, 75, 87, 372, 383, 451, 459, 466
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 1 cut(s) 193
SspMI CTAG 2 cut(s) 86, 378
StyD4I CCNGG 2 cut(s) 243, 337
StyI CCWWGG 2 cut(s) 73, 85
TaaI ACNGT 4 cut(s) 124, 160, 286, 359
TaqI TCGA 2 cut(s) 14, 119
TasI AATT 1 cut(s) 193
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 114, 255, 469
Tru9I TTAA 3 cut(s) 114, 255, 469
TscAI CASTG 2 cut(s) 70, 362
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 3 cut(s) 23, 311, 370
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 173, 340
TspRI CASTG 2 cut(s) 70, 362
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 241
XmaJI CCTAGG 1 cut(s) 85
XspI CTAG 2 cut(s) 86, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.