Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu-oxidase_2 | PF07731 | 5 - 31 | 2.5e-07 | Multicopper oxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5 |
| Acc36I | ACCTGC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 124, 143 |
| AluBI | AGCT | 2 cut(s) | 150, 157 |
| AluI | AGCT | 2 cut(s) | 150, 157 |
| Alw26I | GTCTC | 2 cut(s) | 40, 98 |
| ApeKI | GCWGC | 1 cut(s) | 147 |
| BaeGI | GKGCMC | 1 cut(s) | 98 |
| BbvI | GCAGC | 1 cut(s) | 159 |
| BcoDI | GTCTC | 2 cut(s) | 40, 98 |
| BfuAI | ACCTGC | 1 cut(s) | 5 |
| BisI | GCNGC | 1 cut(s) | 148 |
| BlsI | GCNGC | 1 cut(s) | 149 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 124, 143 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 124, 143 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseSI | GKGCMC | 1 cut(s) | 98 |
| BseXI | GCAGC | 1 cut(s) | 159 |
| BsiSI | CCGG | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 124, 143 |
| BsmAI | GTCTC | 2 cut(s) | 40, 98 |
| Bsp1286I | GDGCHC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspMI | ACCTGC | 1 cut(s) | 5 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstMAI | GTCTC | 2 cut(s) | 40, 98 |
| BstSLI | GKGCMC | 1 cut(s) | 98 |
| BstV1I | GCAGC | 1 cut(s) | 159 |
| BveI | ACCTGC | 1 cut(s) | 5 |
| CviAII | CATG | 2 cut(s) | 57, 143 |
| CviJI | RGCY | 3 cut(s) | 128, 150, 157 |
| CviKI_1 | RGCY | 3 cut(s) | 128, 150, 157 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| FaeI | CATG | 2 cut(s) | 60, 146 |
| FaiI | YATR | 8 cut(s) | 22, 39, 41, 58, 65, 80, 113, 144 |
| FatI | CATG | 2 cut(s) | 56, 142 |
| FauNDI | CATATG | 1 cut(s) | 39 |
| Fnu4HI | GCNGC | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 1 cut(s) | 148 |
| GluI | GCNGC | 1 cut(s) | 148 |
| HapII | CCGG | 1 cut(s) | 125 |
| Hin1II | CATG | 2 cut(s) | 60, 146 |
| HinfI | GANTC | 1 cut(s) | 68 |
| HpaII | CCGG | 1 cut(s) | 125 |
| HpyCH4V | TGCA | 2 cut(s) | 14, 142 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92II | CATG | 2 cut(s) | 60, 146 |
| LmnI | GCTCC | 1 cut(s) | 120 |
| LpnPI | CCDG | 3 cut(s) | 114, 138, 167 |
| Lsp1109I | GCAGC | 1 cut(s) | 159 |
| MboII | GAAGA | 1 cut(s) | 97 |
| MhlI | GDGCHC | 1 cut(s) | 98 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MnlI | CCTC | 1 cut(s) | 132 |
| MspI | CCGG | 1 cut(s) | 125 |
| NdeI | CATATG | 1 cut(s) | 39 |
| NlaIII | CATG | 2 cut(s) | 60, 146 |
| PaqCI | CACCTGC | 1 cut(s) | 5 |
| PkrI | GCNGC | 1 cut(s) | 149 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| SatI | GCNGC | 1 cut(s) | 148 |
| SchI | GAGTC | 1 cut(s) | 77 |
| SduI | GDGCHC | 1 cut(s) | 98 |
| SetI | ASST | 4 cut(s) | 19, 103, 152, 159 |
| SgeI | CNNG | 8 cut(s) | 27, 64, 69, 103, 113, 137, 155, 166 |
| TseI | GCWGC | 1 cut(s) | 147 |