Rw5G038200

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000610
Physical Location & Seq
Reverse (-)
67478643 .. 67483801
5159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038200.1

Sequence Viewer

Length: 1575 bp
ATGGGTGTTGCTCTTCTTTCACTTGTTAGGCATTTTGTTCTCTTTTTCATCACATTGGGTCTCATTCCTCATCAGCAAACTCTTGCAAGCATAACAAGGCACTACAAATTTGATATCCAACTGCAAAATGTGACAAGGCTGTGCCACACCAAGAGCATTGTAACCGTAAACGGACAATTTCCTGGGCCTCGAATTGTTGCTAGGGAGGGTGATCACGTCCTCATTAAAGTGGTTAACCATGTTCAAAGCAATATCTCCATCCATTGCTTCAAACCGTGGGCCGATGGTCCGGAATACATTACTCAATGCCCGATACAAACCGGCCAAAGAGGCACGCTTTGGTGGCATGCTCACATTTCATGGCTAAGATCAACCATCTATGGCCCCTTAATCATTCTTCCCAAGCGTGGTGTTCCTTATCCATTTACTAAACCCTACAAGGAAGTTTCTGTTGGAAAATTTGGAGAATGGGGGAATGTGGATCCTGAAGCAGTCATAAACCAGGCCCTGCAGACTGGGGGAGGACCAAATGTTTCTGATGCTTATACCATTAATGCTCTCCCAGGACCTTTGTATAACTGCTCTGCCAAAGATACATTCAAGCTTAAGGTTCAAGCTGGGAAGACATACCTTCTGCGCTTGATCAATGTAGCACTGAACGACGAACTTTTCCCCTTCGACACCAACACCATTCTCATTGCCCCGGGACAAACCACAAACGTTCTTCTCAAAACCAAGCCCAACTTCCCAAATGCCACATTTCTCATGACTGCAAGGCCATGCGTGACTGGTCTAGGCACCTTTGACAACTCTACTCATGCTGCCATTCTAGAGTACGAAACGACTACACTTCCACTCCACAAACCAACTCTCCCAGCTCTAAATGACACATCGTTTGCAACAAAGTTCGCTAGCAAACTCCGCAGCTTAAACACTCCACAGTTCCCAGCTAACGTCCCACAAAAAGTTGACAAGCGTTTGTTCTTCACAATAGGACTTGGAACCAGCCCATGTAGCCAGCAGCAGCACAACGACCAAACTTGCCAAGGACCCAATGGAACCATGTTTGCTGCTTCAATCAACAACGTTTCTTTTACTATGCCAAACACCGCCTTACTCCAATCCCACTTCTCTGGCCAATCAAAGGGGGTCTATTCCCCTGACTTTCCGATCAGTCCTTTAACTCCATTTAATTACACCGGAGCCCAGCTGAACAATACTAATGTGGGCAATGGTACAAAGCTAATGGTGCTTCCGTTTAATACTAGTGTGGAGTTGGTGTTGCAGGACACTAGTATTCTTGGTGCTGAAAGTCATCCTCTTCATCTCCATGGATTCAACTTCTTTGTTGTTGGTCAAGGGTTTGACAACTTTGACCAGAATAAGGACCCTAAGAAGTTCAATCTGGTTGACCCCGTTGAAAGAAACACAGTGGGTGTGCCCTCTGGTGGGTGGGTTGCCATTCGATTTCGAGCAGATAACCCCGGTGTCTGGTTCATGCATTGCCACTACGAAATCTACACTAGCTGGGGCTTGAAGATGGCTTGGATGGTCTTATTATATATAAGACTATAA

Protein Analysis

524

Amino Acids

58.15

Weight (kDa)

9.11

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 39 - 135 1e-22 Multicopper oxidase
Cu-oxidase PF00394 154 - 224 4.2e-12 Multicopper oxidase
Cu-oxidase PF00394 225 - 280 1.9e-06 Multicopper oxidase
Cu-oxidase_2 PF07731 390 - 518 6.9e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 289
AciI CCGC 2 cut(s) 922, 1110
AclI AACGTT 2 cut(s) 720, 1086
AclWI GGATC 2 cut(s) 476, 489
AcoI YGGCCR 2 cut(s) 322, 1135
AcsI RAATTY 2 cut(s) 107, 458
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 2 cut(s) 836, 1237
AfiI CCNNNNNNNGG 6 cut(s) 407, 1144, 1384, 1448, 1449, 1491
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 9 cut(s) 245, 271, 601, 614, 1077, 1339, 1402, 1421, 1537
AhlI ACTAGT 2 cut(s) 1265, 1292
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 181, 501, 562
AjuI GAANNNNNNNTTGG 6 cut(s) 435, 467, 581, 613, 728, 760
AluBI AGCT 8 cut(s) 604, 617, 878, 927, 950, 1210, 1243, 1527
AluI AGCT 8 cut(s) 604, 617, 878, 927, 950, 1210, 1243, 1527
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 476, 489
AlwNI CAGNNNCTG 1 cut(s) 508
Ama87I CYCGRG 1 cut(s) 703
Aor13HI TCCGGA 1 cut(s) 289
AoxI GGCC 7 cut(s) 185, 279, 322, 382, 504, 776, 1135
ApeKI GCWGC 5 cut(s) 821, 924, 1021, 1024, 1070
ApoI RAATTY 2 cut(s) 107, 458
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 9 cut(s) 185, 279, 287, 383, 505, 524, 566, 1049, 1387
AsuC2I CCSGG 3 cut(s) 704, 705, 1485
AsuHPI GGTGA 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 911
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 5 cut(s) 287, 524, 566, 1049, 1387
BaeGI GKGCMC 1 cut(s) 1443
BalI TGGCCA 1 cut(s) 1137
BamHI GGATCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 797
BanII GRGCYC 1 cut(s) 1207
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 5 cut(s) 808, 936, 1033, 1036, 1057
BccI CCATC 5 cut(s) 266, 278, 383, 1534, 1543
BciT130I CCWGG 3 cut(s) 183, 503, 564
BclI TGATCA 2 cut(s) 211, 642
BcnI CCSGG 3 cut(s) 704, 705, 1485
BcoDI GTCTC 1 cut(s) 65
BcuI ACTAGT 2 cut(s) 1265, 1292
BfaI CTAG 7 cut(s) 201, 794, 830, 912, 1266, 1293, 1524
BfmI CTRYAG 1 cut(s) 509
BfrI CTTAAG 1 cut(s) 605
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 5 cut(s) 822, 925, 1022, 1025, 1071
BlsI GCNGC 5 cut(s) 823, 926, 1023, 1026, 1072
Bme1390I CCNGG 6 cut(s) 183, 503, 564, 704, 705, 1485
Bme18I GGWCC 5 cut(s) 287, 524, 566, 1049, 1387
BmeT110I CYCGRG 1 cut(s) 703
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 9 cut(s) 185, 279, 287, 383, 505, 524, 566, 1049, 1387
BmiI GGNNCC 8 cut(s) 385, 483, 799, 1003, 1051, 1060, 1204, 1389
BmrFI CCNGG 6 cut(s) 183, 503, 564, 704, 705, 1485
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 529
BmtI GCTAGC 1 cut(s) 915
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 629
BpuMI CCSGG 3 cut(s) 704, 705, 1485
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 8 cut(s) 182, 275, 562, 702, 703, 1045, 1330, 1483
BsaWI WCCGGW 2 cut(s) 289, 1199
BsaXI ACNNNNNCTCC 6 cut(s) 840, 855, 870, 885, 1265, 1295
Bsc4I CCNNNNNNNGG 6 cut(s) 407, 1144, 1384, 1448, 1449, 1491
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 520, 793
Bse3DI GCAATG 4 cut(s) 262, 696, 1237, 1501
BseAI TCCGGA 1 cut(s) 289
BseBI CCWGG 3 cut(s) 183, 503, 564
BseDI CCNNGG 8 cut(s) 182, 275, 562, 702, 703, 1045, 1330, 1483
BseGI GGATG 3 cut(s) 258, 1315, 1554
BseLI CCNNNNNNNGG 6 cut(s) 407, 1144, 1384, 1448, 1449, 1491
BseMI GCAATG 4 cut(s) 262, 696, 1237, 1501
BseNI ACTGG 2 cut(s) 520, 793
BseSI GKGCMC 1 cut(s) 1443
BseXI GCAGC 5 cut(s) 808, 936, 1033, 1036, 1057
BseYI CCCAGC 5 cut(s) 617, 874, 946, 1206, 1527
BshFI GGCC 7 cut(s) 187, 281, 324, 384, 506, 778, 1137
BshNI GGYRCC 1 cut(s) 797
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 5 cut(s) 290, 321, 704, 1200, 1485
BslFI GGGAC 2 cut(s) 720, 941
BslI CCNNNNNNNGG 6 cut(s) 407, 1144, 1384, 1448, 1449, 1491
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 720, 941
BsnI GGCC 7 cut(s) 187, 281, 324, 384, 506, 778, 1137
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 703
Bsp1286I GDGCHC 2 cut(s) 1207, 1443
Bsp13I TCCGGA 1 cut(s) 289
Bsp143I GATC 5 cut(s) 211, 368, 481, 642, 1170
Bsp19I CCATGG 1 cut(s) 1330
BspACI CCGC 2 cut(s) 922, 1110
BspANI GGCC 7 cut(s) 187, 281, 324, 384, 506, 778, 1137
BspEI TCCGGA 1 cut(s) 289
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 8 cut(s) 385, 483, 799, 1003, 1051, 1060, 1204, 1389
BspMAI CTGCAG 1 cut(s) 513
BspOI GCTAGC 1 cut(s) 915
BspPI GGATC 2 cut(s) 476, 489
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 797
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 4 cut(s) 262, 696, 1237, 1501
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 2 cut(s) 520, 793
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 8 cut(s) 182, 275, 562, 702, 703, 1045, 1330, 1483
BssMI GATC 5 cut(s) 211, 368, 481, 642, 1170
BssT1I CCWWGG 2 cut(s) 1045, 1330
Bst2UI CCWGG 3 cut(s) 183, 503, 564
Bst4CI ACNGT 4 cut(s) 166, 276, 942, 1432
Bst6I CTCTTC 2 cut(s) 18, 1326
BstAFI CTTAAG 1 cut(s) 605
BstC8I GCNNGC 5 cut(s) 88, 335, 348, 913, 1019
BstDEI CTNAG 2 cut(s) 365, 1392
BstDSI CCRYGG 2 cut(s) 275, 1330
BstF5I GGATG 3 cut(s) 258, 1315, 1554
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 5 cut(s) 214, 371, 484, 645, 1173
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 5 cut(s) 211, 368, 481, 642, 1170
BstMWI GCNNNNNNNGC 5 cut(s) 330, 343, 921, 1014, 1249
BstNI CCWGG 3 cut(s) 183, 503, 564
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 6 cut(s) 181, 501, 562, 702, 703, 1483
BstSFI CTRYAG 1 cut(s) 509
BstSLI GKGCMC 1 cut(s) 1443
BstV1I GCAGC 5 cut(s) 808, 936, 1033, 1036, 1057
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 1133
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 7 cut(s) 187, 281, 324, 384, 506, 778, 1137
BtgI CCRYGG 2 cut(s) 275, 1330
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 258, 1315, 1554
BtsIMutI CAGTG 2 cut(s) 653, 1437
Cac8I GCNNGC 5 cut(s) 88, 335, 348, 913, 1019
CaiI CAGNNNCTG 1 cut(s) 508
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 9 cut(s) 185, 279, 287, 383, 505, 524, 566, 1049, 1387
Cfr9I CCCGGG 1 cut(s) 703
Csp6I GTAC 2 cut(s) 835, 1236
CviQI GTAC 2 cut(s) 835, 1236
DdeI CTNAG 2 cut(s) 365, 1392
DpnI GATC 5 cut(s) 213, 370, 483, 644, 1172
DpnII GATC 5 cut(s) 211, 368, 481, 642, 1170
EaeI YGGCCR 2 cut(s) 322, 1135
Eam1104I CTCTTC 2 cut(s) 18, 1326
EarI CTCTTC 2 cut(s) 18, 1326
Eco130I CCWWGG 2 cut(s) 1045, 1330
Eco24I GRGCYC 1 cut(s) 1207
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 5 cut(s) 287, 524, 566, 1049, 1387
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 703
EcoO109I RGGNCCY 4 cut(s) 505, 566, 1049, 1387
EcoRII CCWGG 3 cut(s) 181, 501, 562
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 1045, 1330
EcoT22I ATGCAT 1 cut(s) 1503
EcoT38I GRGCYC 1 cut(s) 1207
ErhI CCWWGG 2 cut(s) 1045, 1330
FalI AAGNNNNNCTT 2 cut(s) 728, 760
FaqI GGGAC 2 cut(s) 720, 941
FbaI TGATCA 2 cut(s) 211, 642
Fnu4HI GCNGC 5 cut(s) 822, 925, 1022, 1025, 1071
FokI GGATG 3 cut(s) 245, 1302, 1561
FriOI GRGCYC 1 cut(s) 1207
Fsp4HI GCNGC 5 cut(s) 822, 925, 1022, 1025, 1071
FspBI CTAG 7 cut(s) 201, 794, 830, 912, 1266, 1293, 1524
GlaI GCGC 1 cut(s) 638
GluI GCNGC 5 cut(s) 822, 925, 1022, 1025, 1071
GsaI CCCAGC 5 cut(s) 621, 878, 950, 1210, 1531
HaeIII GGCC 7 cut(s) 187, 281, 324, 384, 506, 778, 1137
HapII CCGG 5 cut(s) 290, 321, 704, 1200, 1485
HhaI GCGC 1 cut(s) 639
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 3 cut(s) 235, 970, 1411
HindII GTYRAC 3 cut(s) 235, 970, 1411
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 1 cut(s) 1335
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 5 cut(s) 290, 321, 704, 1200, 1485
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 4 cut(s) 169, 235, 970, 1411
Hpy188I TCNGA 2 cut(s) 538, 1170
Hpy188III TCNNGA 4 cut(s) 290, 485, 766, 830
Hpy8I GTNNAC 4 cut(s) 169, 235, 970, 1411
Hpy99I CGWCG 1 cut(s) 665
HpyAV CCTTC 2 cut(s) 641, 685
HpyCH4III ACNGT 4 cut(s) 166, 276, 942, 1432
HpyCH4IV ACGT 4 cut(s) 216, 720, 954, 1086
HpyCH4V TGCA 7 cut(s) 86, 124, 511, 773, 899, 1285, 1501
HpyF10VI GCNNNNNNNGC 5 cut(s) 330, 343, 921, 1014, 1249
HpyF3I CTNAG 2 cut(s) 365, 1392
HpySE526I ACGT 4 cut(s) 216, 720, 954, 1086
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 289
Ksp22I TGATCA 2 cut(s) 211, 642
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 5 cut(s) 211, 368, 481, 642, 1170
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 1202
Lsp1109I GCAGC 5 cut(s) 808, 936, 1033, 1036, 1057
LweI GCATC 1 cut(s) 529
MaeI CTAG 7 cut(s) 201, 794, 830, 912, 1266, 1293, 1524
MaeII ACGT 4 cut(s) 216, 720, 954, 1086
MaeIII GTNAC 3 cut(s) 130, 160, 784
MalI GATC 5 cut(s) 213, 370, 483, 644, 1172
MboI GATC 5 cut(s) 211, 368, 481, 642, 1170
MboII GAAGA 7 cut(s) 5, 389, 634, 716, 976, 1313, 1549
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 1207, 1443
MlsI TGGCCA 1 cut(s) 1137
MluCI AATT 5 cut(s) 107, 176, 192, 458, 1192
MluNI TGGCCA 1 cut(s) 1137
MmeI TCCRAC 2 cut(s) 142, 433
MnlI CCTC 8 cut(s) 78, 198, 199, 230, 323, 515, 1329, 1453
Mox20I TGGCCA 1 cut(s) 1137
Mph1103I ATGCAT 1 cut(s) 1503
MroI TCCGGA 1 cut(s) 289
MscI TGGCCA 1 cut(s) 1137
MseI TTAA 9 cut(s) 225, 234, 389, 552, 606, 929, 1181, 1191, 1260
MslI CAYNNNNRTG 2 cut(s) 227, 1329
Msp20I TGGCCA 1 cut(s) 1137
MspA1I CMGCKG 1 cut(s) 1210
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 5 cut(s) 290, 321, 704, 1200, 1485
MspR9I CCNGG 6 cut(s) 183, 503, 564, 704, 705, 1485
MvaI CCWGG 3 cut(s) 183, 503, 564
MwoI GCNNNNNNNGC 5 cut(s) 330, 343, 921, 1014, 1249
NciI CCSGG 3 cut(s) 704, 705, 1485
NcoI CCATGG 1 cut(s) 1330
NdeII GATC 5 cut(s) 211, 368, 481, 642, 1170
NheI GCTAGC 1 cut(s) 911
NlaIV GGNNCC 8 cut(s) 385, 483, 799, 1003, 1051, 1060, 1204, 1389
NmuCI GTSAC 2 cut(s) 130, 784
NsiI ATGCAT 1 cut(s) 1503
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PagI TCATGA 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 1335
PkrI GCNGC 5 cut(s) 823, 926, 1023, 1026, 1072
PpuMI RGGWCCY 3 cut(s) 566, 1049, 1387
PshBI ATTAAT 1 cut(s) 552
Psp1406I AACGTT 2 cut(s) 720, 1086
Psp5II RGGWCCY 3 cut(s) 566, 1049, 1387
Psp6I CCWGG 3 cut(s) 181, 501, 562
PspFI CCCAGC 5 cut(s) 617, 874, 946, 1206, 1527
PspGI CCWGG 3 cut(s) 181, 501, 562
PspN4I GGNNCC 8 cut(s) 385, 483, 799, 1003, 1051, 1060, 1204, 1389
PspPI GGNCC 9 cut(s) 185, 279, 287, 383, 505, 524, 566, 1049, 1387
PspPPI RGGWCCY 3 cut(s) 566, 1049, 1387
PstI CTGCAG 1 cut(s) 513
PstNI CAGNNNCTG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 2 cut(s) 836, 1237
RsaNI GTAC 2 cut(s) 835, 1236
RseI CAYNNNNRTG 2 cut(s) 227, 1329
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 9 cut(s) 225, 234, 389, 552, 606, 929, 1181, 1191, 1260
SatI GCNGC 5 cut(s) 822, 925, 1022, 1025, 1071
Sau3AI GATC 5 cut(s) 211, 368, 481, 642, 1170
Sau96I GGNCC 9 cut(s) 185, 279, 287, 383, 505, 524, 566, 1049, 1387
ScrFI CCNGG 6 cut(s) 183, 503, 564, 704, 705, 1485
SduI GDGCHC 2 cut(s) 1207, 1443
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 509
SinI GGWCC 5 cut(s) 287, 524, 566, 1049, 1387
SmaI CCCGGG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 227, 1329
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SpeI ACTAGT 2 cut(s) 1265, 1292
SphI GCATGC 1 cut(s) 350
Sse9I AATT 5 cut(s) 107, 176, 192, 458, 1192
SsiI CCGC 2 cut(s) 922, 1110
SspMI CTAG 7 cut(s) 201, 794, 830, 912, 1266, 1293, 1524
StyD4I CCNGG 6 cut(s) 181, 501, 562, 702, 703, 1483
StyI CCWWGG 2 cut(s) 1045, 1330
TaaI ACNGT 4 cut(s) 166, 276, 942, 1432
TaiI ACGT 4 cut(s) 219, 723, 957, 1089
TaqI TCGA 4 cut(s) 190, 678, 1465, 1471
TasI AATT 5 cut(s) 107, 176, 192, 458, 1192
TfiI GAWTC 1 cut(s) 1335
Tru1I TTAA 9 cut(s) 225, 234, 389, 552, 606, 929, 1181, 1191, 1260
Tru9I TTAA 9 cut(s) 225, 234, 389, 552, 606, 929, 1181, 1191, 1260
TscAI CASTG 2 cut(s) 660, 1437
TseFI GTSAC 2 cut(s) 130, 784
TseI GCWGC 5 cut(s) 821, 924, 1021, 1024, 1070
Tsp45I GTSAC 2 cut(s) 130, 784
TspDTI ATGAA 4 cut(s) 37, 348, 1313, 1486
TspGWI ACGGA 2 cut(s) 186, 1245
TspMI CCCGGG 1 cut(s) 703
TspRI CASTG 2 cut(s) 660, 1437
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 5 cut(s) 287, 524, 566, 1049, 1387
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 2 cut(s) 107, 458
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XmaI CCCGGG 1 cut(s) 703
XspI CTAG 7 cut(s) 201, 794, 830, 912, 1266, 1293, 1524
Zsp2I ATGCAT 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.