Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000610

Physical Location & Seq

Genomic Coordinates Forward (+)

55652532 .. 55655262

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCAATGGGGTATTTATTTGGAACTCGGTTTCCAGATTTCCCGCCTCTGCTGTTTAACTTTACAGCACAGTACTTGCCGCTGTACCTTCAGACCCCAAAACGAGGGACAGAGGTGCAGGTACTGGAGTACAATGCGACAGTGGAGCTTGTGTTTCAGGGGACTAATTTGGTGGCAGGGGATGACCATCCAATGCATCTTCATGGTTACAGTTTCTATGTGGTTGGATTGGGGCTTGGGAACTTTGACAAGGATAAGGACCCTTTGAAATACAATCTTGTTGATCCTCCTCTTCAAAACACCATTGCTGTCCCTGTAAATGGGTGGACTACCATAAGATTCAAGGCTGACAATCCGGGAGTTTGGTTTATGCATTGCCATCTGGATAGGCATATGTCATGGGGCATGGATACGACATTTATAGTAAAAAATATATGCCGCCTTGCTGAAGGCTGGCTCTCCACAAATATTGAAATTACTGCCGAAGGAAGAAGGATAACCAAGCTTGATCAGATTTTACTCAACGGAAACAACATTGCCATTGTAAGTATTGGGAATTCCGTTGAATTTAGTTCGGTTCTTCTTCATGTGGTTGATCCAATTTCTGTGACCTCGTTTCAAAACCCTTGCAAAATACTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

214

Amino Acids

24.06

Weight (kDa)

5.93

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	13 - 143	1.9e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60020 AT5G60020 AT5G60020
fragaria_vesca	FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica	MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica	Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis	pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis	RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata	RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora	Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa	Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha	Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana	Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AciI	CCGC	3 cut(s)	44, 80, 439
AclWI	GGATC	2 cut(s)	278, 590
AcsI	RAATTY	2 cut(s)	556, 566
AcuI	CTGAAG	2 cut(s)	74, 468
AfaI	GTAC	4 cut(s)	74, 86, 123, 131
AfiI	CCNNNNNNNGG	2 cut(s)	104, 320
AgsI	TTSAA	6 cut(s)	268, 296, 343, 473, 566, 620
AloI	GAACNNNNNNTCC	2 cut(s)	16, 48
AluBI	AGCT	2 cut(s)	148, 505
AluI	AGCT	2 cut(s)	148, 505
AlwI	GGATC	2 cut(s)	278, 590
AlwNI	CAGNNNCTG	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	556, 566
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	259
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BccI	CCATC	2 cut(s)	195, 387
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	80, 439
BlsI	GCNGC	2 cut(s)	81, 440
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 320
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	3 cut(s)	303, 373, 534
Bse8I	GATNNNNATC	1 cut(s)	186
BseGI	GGATG	2 cut(s)	187, 187
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	104, 320
BseMI	GCAATG	3 cut(s)	303, 373, 534
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	3 cut(s)	121, 175, 296
BslI	CCNNNNNNNGG	2 cut(s)	104, 320
BsmFI	GGGAC	3 cut(s)	121, 175, 296
Bsp143I	GATC	3 cut(s)	283, 508, 595
BspACI	CCGC	3 cut(s)	44, 80, 439
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	278, 590
BsrDI	GCAATG	3 cut(s)	303, 373, 534
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	283, 508, 595
Bst4CI	ACNGT	3 cut(s)	72, 142, 212
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	187, 187
BstKTI	GATC	3 cut(s)	286, 511, 598
BstMBI	GATC	3 cut(s)	283, 508, 595
BstSCI	CCNGG	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	187, 187
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	4 cut(s)	73, 85, 122, 130
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	4 cut(s)	203, 399, 406, 587
CviJI	RGCY	6 cut(s)	148, 235, 347, 453, 457, 505
CviKI_1	RGCY	6 cut(s)	148, 235, 347, 453, 457, 505
CviQI	GTAC	4 cut(s)	73, 85, 122, 130
DpnI	GATC	3 cut(s)	285, 510, 597
DpnII	GATC	3 cut(s)	283, 508, 595
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	74, 468
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	556
EcoT22I	ATGCAT	2 cut(s)	198, 375
FaeI	CATG	4 cut(s)	206, 402, 409, 590
FaqI	GGGAC	3 cut(s)	121, 175, 296
FatI	CATG	4 cut(s)	202, 398, 405, 586
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	80, 439
FokI	GGATG	2 cut(s)	174, 194
Fsp4HI	GCNGC	2 cut(s)	80, 439
GluI	GCNGC	2 cut(s)	80, 439
GsuI	CTGGAG	1 cut(s)	146
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	4 cut(s)	206, 402, 409, 590
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	93, 513
Hpy188III	TCNNGA	2 cut(s)	35, 383
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	4 cut(s)	98, 443, 479, 486
HpyCH4III	ACNGT	3 cut(s)	72, 142, 212
HpyCH4V	TGCA	4 cut(s)	118, 196, 373, 630
Hsp92II	CATG	4 cut(s)	206, 402, 409, 590
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	283, 508, 595
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	48, 104, 110, 143, 162, 327, 368, 369, 439
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	206, 607
MalI	GATC	3 cut(s)	285, 510, 597
MboI	GATC	3 cut(s)	283, 508, 595
MboII	GAAGA	5 cut(s)	191, 284, 501, 572, 575
MluCI	AATT	5 cut(s)	166, 474, 556, 566, 600
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	57, 98, 106, 297, 300, 622
Mph1103I	ATGCAT	2 cut(s)	198, 375
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	357
NciI	CCSGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	3 cut(s)	283, 508, 595
NlaIII	CATG	4 cut(s)	206, 402, 409, 590
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	2 cut(s)	198, 375
PfeI	GAWTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	81, 440
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	4 cut(s)	74, 86, 123, 131
RsaNI	GTAC	4 cut(s)	73, 85, 122, 130
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	80, 439
Sau3AI	GATC	3 cut(s)	283, 508, 595
Sau96I	GGNCC	1 cut(s)	259
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	6 cut(s)	90, 117, 123, 150, 507, 614
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	5 cut(s)	166, 474, 556, 566, 600
SsiI	CCGC	3 cut(s)	44, 80, 439
SspI	AATATT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	72, 142, 212
TasI	AATT	5 cut(s)	166, 474, 556, 566, 600
TatI	WGTACW	2 cut(s)	72, 129
TauI	GCSGC	2 cut(s)	82, 441
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	2 cut(s)	191, 575
TspGWI	ACGGA	2 cut(s)	540, 550
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	556, 566
ZrmI	AGTACT	1 cut(s)	74
Zsp2I	ATGCAT	2 cut(s)	198, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.