Rh5DG432700

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000610
Physical Location & Seq
Reverse (-)
69149289 .. 69152245
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG432700.1

Sequence Viewer

Length: 1443 bp
ATGGGTGTAGCTCTTTTTTCATTTGCTAGGCTCTTTGTTCTCTCTTTCATCACATTGGGTCTCATTCCTCAGCTAGCTCCTGCAAGCATAACAAGGCACTACAAATTTGATGTACAACTGCAAAATGTGACAAGACTGTGCCATACCAAAAGCATTGTAACCATAAACGGTCAATTTCCTGGGCCTCGAATTGTTGCTAGGGAGGGAGAATGGTGGAATGCAGATCCTGAAGCAGTCATAAACCAGGCCTTGCAAACTGGGGGAGGACCAAATGTTTCTGATGCTTACACCATCAATGGACTCCCAGGGCCATTGTATAACTGCTCTGCCAAAGATGCTTTCAAGCTAAAGGTTCAAGCTGGGAAGACATACCTTCTGCGCCTAATCAATGCAGCGCTGAACGACGAGCTCTTCTTCAGCATTGCAAACCACACCCTCAAAGTGGTGGAAACTGATGCAGTTTACGTCAAACCCTTCGAGACCAACACCATTCTCATTGCCCCGGGACAAACCACAAATGTTCTTCTCAAAACAAAACCTAACTACCCAAACGCCACATTTTTCATGACTGCAAGGCCATACGTGACTGGTCTAGGCACCTTTGATAACTCCACTCTTGCTGGCATTTTAGAATACCAAACGACTACACTTCATTCAACCCTCCCAATGAACAAACTTCCACTCCACAAACCAATTCTCCCAGTTCTAAATGACACAACATTTGCAACAAAATTCTCCAATAAACTCCGTAGCTTGAACACTCCTCAGTTCCCTGCTAATGTTCCACAGAAAATTGACAAGCATTTGTTCTTCACCATAGGGCTTGGAACCAACCCATGTAGCCAACAGAATCACAACAACCAGACTTGCCAAGGACCCAATGGAACCATGTTTGCTGCTTCAATCAACAATATTTCTTTCACTATGCCAAACACCGCCTTACTCCAATCCCACTTCTTTGGCCAATCCAATGGGGTTTATTCCCCTAATTTTCCAATCAGTCCTTTAATTCCATTTAATTACACTGGAGCCCAGATGAACAATACTAATGTGGGCAATGGTACTAAGCTAATGGTGCTTCCCTTTAACACTAGTGTGGAGTTGGTGTTGCAGGACACTAGTATTCTTGGTGCTGAAAGTCATCCTCTTCATCTTCATGGCTTTAATTTCTTTGTTGTTGGTCAAGGTTTTGGCAACTTCGACCAAAATAAGGACCCTAGGAAGTTCAATCTGATTGACCCTGTTGAGAGAGACACCGTGGGTGTGCCCTCCGGCGGGTGGGTTGCTATTCGGTTTCTAGCAGATAACCCGGGTGTGTGGTTCATGCATTGCCACCTTGAGATCCATACCAGCTGGGGCCTGAAGATGGCTTGGGTAGTCTTAGATGGAAAGCTTTCCAATCAAAAGTTGCTTCCTCCGCCACTGGATCTGCCCAAATGTTGA

Protein Analysis

480

Amino Acids

52.85

Weight (kDa)

8.89

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 68 - 214 6.2e-42 Multicopper oxidase
Cu-oxidase_2 PF07731 335 - 462 5.7e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AciI CCGC 3 cut(s) 936, 1275, 1418
AclWI GGATC 3 cut(s) 218, 1336, 1434
AcoI YGGCCR 1 cut(s) 961
AcsI RAATTY 2 cut(s) 104, 731
AcuI CTGAAG 3 cut(s) 249, 400, 1382
AfaI GTAC 2 cut(s) 114, 1063
AfeI AGCGCT 1 cut(s) 396
AfiI CCNNNNNNNGG 6 cut(s) 442, 1210, 1274, 1275, 1278, 1366
AgsI TTSAA 6 cut(s) 343, 356, 657, 757, 903, 1228
AhlI ACTAGT 2 cut(s) 1091, 1118
AjnI CCWGG 3 cut(s) 178, 243, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AleI CACNNNNGTG 1 cut(s) 1094
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 3 cut(s) 65, 473, 1245
AlwI GGATC 3 cut(s) 218, 1336, 1434
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 2 cut(s) 502, 1309
Aor51HI AGCGCT 1 cut(s) 396
AoxI GGCC 6 cut(s) 182, 246, 308, 575, 961, 1357
ApeKI GCWGC 2 cut(s) 392, 896
ApoI RAATTY 2 cut(s) 104, 731
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 1393
AspA2I CCTAGG 1 cut(s) 1217
AspLEI GCGC 2 cut(s) 381, 397
AspS9I GGNCC 6 cut(s) 182, 266, 308, 875, 1213, 1357
AsuC2I CCSGG 4 cut(s) 503, 504, 1310, 1311
AsuHPI GGTGA 1 cut(s) 805
AsuNHI GCTAGC 1 cut(s) 73
AvaI CYCGRG 2 cut(s) 502, 1309
AvaII GGWCC 3 cut(s) 266, 875, 1213
AvrII CCTAGG 1 cut(s) 1217
BaeGI GKGCMC 1 cut(s) 1269
BalI TGGCCA 1 cut(s) 963
BanI GGYRCC 1 cut(s) 596
BanII GRGCYC 2 cut(s) 411, 1033
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 411
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 404, 883
BccI CCATC 3 cut(s) 299, 1360, 1379
BciT130I CCWGG 3 cut(s) 180, 245, 306
BcnI CCSGG 4 cut(s) 503, 504, 1310, 1311
BcoDI GTCTC 3 cut(s) 65, 473, 1245
BcuI ACTAGT 2 cut(s) 1091, 1118
BfaI CTAG 8 cut(s) 27, 74, 198, 593, 1092, 1119, 1218, 1298
BfoI RGCGCY 1 cut(s) 398
BisI GCNGC 2 cut(s) 393, 897
BlnI CCTAGG 1 cut(s) 1217
BlsI GCNGC 2 cut(s) 394, 898
Bme1390I CCNGG 7 cut(s) 180, 245, 306, 503, 504, 1310, 1311
Bme18I GGWCC 3 cut(s) 266, 875, 1213
BmeT110I CYCGRG 2 cut(s) 502, 1309
BmgT120I GGNCC 6 cut(s) 182, 266, 308, 875, 1213, 1357
BmiI GGNNCC 7 cut(s) 598, 829, 877, 886, 1030, 1215, 1358
BmrFI CCNGG 7 cut(s) 180, 245, 306, 503, 504, 1310, 1311
BmrI ACTGGG 2 cut(s) 267, 695
BmsI GCATC 3 cut(s) 271, 325, 445
BmtI GCTAGC 1 cut(s) 77
BmuI ACTGGG 2 cut(s) 267, 695
BpiI GAAGAC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 1358
BpuMI CCSGG 4 cut(s) 503, 504, 1310, 1311
BsaAI YACGTR 1 cut(s) 583
BsaI GGTCTC 2 cut(s) 65, 473
BsaJI CCNNGG 9 cut(s) 179, 304, 305, 501, 502, 871, 1217, 1257, 1309
BsaXI ACNNNNNCTCC 6 cut(s) 666, 681, 696, 711, 1091, 1121
Bsc4I CCNNNNNNNGG 6 cut(s) 442, 1210, 1274, 1275, 1278, 1366
Bse1I ACTGG 5 cut(s) 262, 592, 701, 1030, 1428
Bse3DI GCAATG 4 cut(s) 420, 495, 1063, 1327
BseBI CCWGG 3 cut(s) 180, 245, 306
BseDI CCNNGG 9 cut(s) 179, 304, 305, 501, 502, 871, 1217, 1257, 1309
BseGI GGATG 1 cut(s) 1141
BseLI CCNNNNNNNGG 6 cut(s) 442, 1210, 1274, 1275, 1278, 1366
BseMI GCAATG 4 cut(s) 420, 495, 1063, 1327
BseMII CTCAG 2 cut(s) 83, 779
BseNI ACTGG 5 cut(s) 262, 592, 701, 1030, 1428
BseRI GAGGAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 1269
BseXI GCAGC 2 cut(s) 404, 883
BseYI CCCAGC 2 cut(s) 359, 1353
BshFI GGCC 6 cut(s) 184, 248, 310, 577, 963, 1359
BshNI GGYRCC 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 502, 1309
BsiSI CCGG 3 cut(s) 503, 1272, 1310
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 6 cut(s) 442, 1210, 1274, 1275, 1278, 1366
BsmAI GTCTC 3 cut(s) 65, 473, 1245
BsmFI GGGAC 1 cut(s) 519
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 6 cut(s) 184, 248, 310, 577, 963, 1359
Bso31I GGTCTC 2 cut(s) 65, 473
BsoBI CYCGRG 2 cut(s) 502, 1309
Bsp1286I GDGCHC 3 cut(s) 411, 1033, 1269
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 3 cut(s) 223, 1341, 1426
BspACI CCGC 3 cut(s) 936, 1275, 1418
BspANI GGCC 6 cut(s) 184, 248, 310, 577, 963, 1359
BspCNI CTCAG 2 cut(s) 82, 778
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 7 cut(s) 598, 829, 877, 886, 1030, 1215, 1358
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 3 cut(s) 218, 1336, 1434
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 596
BspTNI GGTCTC 2 cut(s) 65, 473
BsrDI GCAATG 4 cut(s) 420, 495, 1063, 1327
BsrGI TGTACA 1 cut(s) 112
BsrI ACTGG 5 cut(s) 262, 592, 701, 1030, 1428
BssECI CCNNGG 9 cut(s) 179, 304, 305, 501, 502, 871, 1217, 1257, 1309
BssMI GATC 3 cut(s) 223, 1341, 1426
BssT1I CCWWGG 2 cut(s) 871, 1217
Bst2UI CCWGG 3 cut(s) 180, 245, 306
Bst4CI ACNGT 3 cut(s) 138, 170, 1258
Bst6I CTCTTC 2 cut(s) 416, 1152
BstAUI TGTACA 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 3 cut(s) 75, 85, 622
BstDEI CTNAG 4 cut(s) 69, 765, 1065, 1381
BstDSI CCRYGG 1 cut(s) 1257
BstF5I GGATG 1 cut(s) 1141
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 381, 397
BstKTI GATC 3 cut(s) 226, 1344, 1429
BstMAI GTCTC 3 cut(s) 65, 473, 1245
BstMBI GATC 3 cut(s) 223, 1341, 1426
BstMWI GCNNNNNNNGC 3 cut(s) 335, 1075, 1417
BstNI CCWGG 3 cut(s) 180, 245, 306
BstSCI CCNGG 7 cut(s) 178, 243, 304, 501, 502, 1308, 1309
BstSLI GKGCMC 1 cut(s) 1269
BstV1I GCAGC 2 cut(s) 404, 883
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 3 cut(s) 223, 1341, 1426
BstXI CCANNNNNNTGG 2 cut(s) 959, 971
BstYI RGATCY 3 cut(s) 223, 1341, 1426
BsuRI GGCC 6 cut(s) 184, 248, 310, 577, 963, 1359
BtgI CCRYGG 1 cut(s) 1257
BtsCI GGATG 1 cut(s) 1141
BtsIMutI CAGTG 2 cut(s) 1023, 1421
Cac8I GCNNGC 3 cut(s) 75, 85, 622
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 564
CfoI GCGC 2 cut(s) 381, 397
Cfr13I GGNCC 6 cut(s) 182, 266, 308, 875, 1213, 1357
Cfr9I CCCGGG 2 cut(s) 502, 1309
Csp6I GTAC 2 cut(s) 113, 1062
CviAII CATG 5 cut(s) 565, 837, 889, 1157, 1324
CviQI GTAC 2 cut(s) 113, 1062
DdeI CTNAG 4 cut(s) 69, 765, 1065, 1381
DpnI GATC 3 cut(s) 225, 1343, 1428
DpnII GATC 3 cut(s) 223, 1341, 1426
EaeI YGGCCR 1 cut(s) 961
Eam1104I CTCTTC 2 cut(s) 416, 1152
EarI CTCTTC 2 cut(s) 416, 1152
EciI GGCGGA 1 cut(s) 1407
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 871, 1217
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 2 cut(s) 411, 1033
Eco31I GGTCTC 2 cut(s) 65, 473
Eco47I GGWCC 3 cut(s) 266, 875, 1213
Eco47III AGCGCT 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 3 cut(s) 249, 400, 1382
Eco88I CYCGRG 2 cut(s) 502, 1309
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 3 cut(s) 875, 1213, 1357
EcoRII CCWGG 3 cut(s) 178, 243, 304
EcoT14I CCWWGG 2 cut(s) 871, 1217
EcoT22I ATGCAT 1 cut(s) 1329
EcoT38I GRGCYC 2 cut(s) 411, 1033
ErhI CCWWGG 2 cut(s) 871, 1217
FaeI CATG 5 cut(s) 568, 840, 892, 1160, 1327
FaqI GGGAC 1 cut(s) 519
FatI CATG 5 cut(s) 564, 836, 888, 1156, 1323
FauI CCCGC 1 cut(s) 1268
Fnu4HI GCNGC 2 cut(s) 393, 897
FokI GGATG 1 cut(s) 1128
FriOI GRGCYC 2 cut(s) 411, 1033
Fsp4HI GCNGC 2 cut(s) 393, 897
FspBI CTAG 8 cut(s) 27, 74, 198, 593, 1092, 1119, 1218, 1298
GlaI GCGC 2 cut(s) 380, 396
GluI GCNGC 2 cut(s) 393, 897
GsaI CCCAGC 2 cut(s) 363, 1357
GsuI CTGGAG 1 cut(s) 1047
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 6 cut(s) 184, 248, 310, 577, 963, 1359
HapII CCGG 3 cut(s) 503, 1272, 1310
HhaI GCGC 2 cut(s) 381, 397
Hin1II CATG 5 cut(s) 568, 840, 892, 1160, 1327
Hin6I GCGC 2 cut(s) 379, 395
HinP1I GCGC 2 cut(s) 379, 395
HindIII AAGCTT 1 cut(s) 1391
HinfI GANTC 2 cut(s) 300, 850
HpaII CCGG 3 cut(s) 503, 1272, 1310
HphI GGTGA 1 cut(s) 805
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 280, 1233
Hpy188III TCNNGA 3 cut(s) 227, 478, 565
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 383, 484
HpyCH4III ACNGT 3 cut(s) 138, 170, 1258
HpyCH4IV ACGT 2 cut(s) 465, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 1075, 1417
HpyF3I CTNAG 4 cut(s) 69, 765, 1065, 1381
HpySE526I ACGT 2 cut(s) 465, 582
Hsp92II CATG 5 cut(s) 568, 840, 892, 1160, 1327
HspAI GCGC 2 cut(s) 379, 395
Kzo9I GATC 3 cut(s) 223, 1341, 1426
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 82, 1028
Lsp1109I GCAGC 2 cut(s) 404, 883
LweI GCATC 3 cut(s) 271, 325, 445
MaeI CTAG 8 cut(s) 27, 74, 198, 593, 1092, 1119, 1218, 1298
MaeII ACGT 2 cut(s) 465, 582
MaeIII GTNAC 3 cut(s) 127, 157, 583
MalI GATC 3 cut(s) 225, 1343, 1428
MboI GATC 3 cut(s) 223, 1341, 1426
MboII GAAGA 8 cut(s) 376, 403, 406, 515, 802, 1139, 1145, 1375
MflI RGATCY 3 cut(s) 223, 1341, 1426
MhlI GDGCHC 3 cut(s) 411, 1033, 1269
MlsI TGGCCA 1 cut(s) 963
MluNI TGGCCA 1 cut(s) 963
MlyI GAGTC 1 cut(s) 294
Mox20I TGGCCA 1 cut(s) 963
Mph1103I ATGCAT 1 cut(s) 1329
MroXI GAANNNNTTC 1 cut(s) 1393
MscI TGGCCA 1 cut(s) 963
MseI TTAA 4 cut(s) 1007, 1017, 1086, 1164
MslI CAYNNNNRTG 2 cut(s) 1094, 1155
Msp20I TGGCCA 1 cut(s) 963
MspA1I CMGCKG 1 cut(s) 1353
MspI CCGG 3 cut(s) 503, 1272, 1310
MspR9I CCNGG 7 cut(s) 180, 245, 306, 503, 504, 1310, 1311
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 3 cut(s) 180, 245, 306
MwoI GCNNNNNNNGC 3 cut(s) 335, 1075, 1417
NciI CCSGG 4 cut(s) 503, 504, 1310, 1311
NdeII GATC 3 cut(s) 223, 1341, 1426
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 5 cut(s) 568, 840, 892, 1160, 1327
NlaIV GGNNCC 7 cut(s) 598, 829, 877, 886, 1030, 1215, 1358
NmuCI GTSAC 2 cut(s) 127, 583
NsiI ATGCAT 1 cut(s) 1329
OliI CACNNNNGTG 1 cut(s) 1094
PagI TCATGA 1 cut(s) 564
PasI CCCWGGG 1 cut(s) 305
PceI AGGCCT 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 1393
PfeI GAWTC 1 cut(s) 850
PkrI GCNGC 2 cut(s) 394, 898
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 2 cut(s) 875, 1213
Psp124BI GAGCTC 1 cut(s) 411
Psp5II RGGWCCY 2 cut(s) 875, 1213
Psp6I CCWGG 3 cut(s) 178, 243, 304
PspFI CCCAGC 2 cut(s) 359, 1353
PspGI CCWGG 3 cut(s) 178, 243, 304
PspN4I GGNNCC 7 cut(s) 598, 829, 877, 886, 1030, 1215, 1358
PspPI GGNCC 6 cut(s) 182, 266, 308, 875, 1213, 1357
PspPPI RGGWCCY 2 cut(s) 875, 1213
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 3 cut(s) 223, 1341, 1426
PvuII CAGCTG 1 cut(s) 1353
RsaI GTAC 2 cut(s) 114, 1063
RsaNI GTAC 2 cut(s) 113, 1062
RseI CAYNNNNRTG 2 cut(s) 1094, 1155
SacI GAGCTC 1 cut(s) 411
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 4 cut(s) 1007, 1017, 1086, 1164
SatI GCNGC 2 cut(s) 393, 897
Sau3AI GATC 3 cut(s) 223, 1341, 1426
Sau96I GGNCC 6 cut(s) 182, 266, 308, 875, 1213, 1357
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 7 cut(s) 180, 245, 306, 503, 504, 1310, 1311
SduI GDGCHC 3 cut(s) 411, 1033, 1269
SfaNI GCATC 3 cut(s) 271, 325, 445
SinI GGWCC 3 cut(s) 266, 875, 1213
SmaI CCCGGG 2 cut(s) 504, 1311
SmiMI CAYNNNNRTG 2 cut(s) 1094, 1155
SmlI CTYRAG 1 cut(s) 1337
SmoI CTYRAG 1 cut(s) 1337
SpeI ACTAGT 2 cut(s) 1091, 1118
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 3 cut(s) 936, 1275, 1418
SspI AATATT 1 cut(s) 913
SspMI CTAG 8 cut(s) 27, 74, 198, 593, 1092, 1119, 1218, 1298
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 7 cut(s) 178, 243, 304, 501, 502, 1308, 1309
StyI CCWWGG 2 cut(s) 871, 1217
TaaI ACNGT 3 cut(s) 138, 170, 1258
TaiI ACGT 2 cut(s) 468, 585
TaqI TCGA 3 cut(s) 187, 477, 1200
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 4 cut(s) 1007, 1017, 1086, 1164
Tru9I TTAA 4 cut(s) 1007, 1017, 1086, 1164
TscAI CASTG 2 cut(s) 1030, 1428
TseFI GTSAC 2 cut(s) 127, 583
TseI GCWGC 2 cut(s) 392, 896
Tsp45I GTSAC 2 cut(s) 127, 583
TspDTI ATGAA 9 cut(s) 9, 37, 553, 641, 683, 1052, 1139, 1145, 1312
TspGWI ACGGA 1 cut(s) 737
TspMI CCCGGG 2 cut(s) 502, 1309
TspRI CASTG 2 cut(s) 1030, 1428
VpaK11BI GGWCC 3 cut(s) 266, 875, 1213
XapI RAATTY 2 cut(s) 104, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 878
XmaI CCCGGG 2 cut(s) 502, 1309
XmaJI CCTAGG 1 cut(s) 1217
XmnI GAANNNNTTC 1 cut(s) 1393
XspI CTAG 8 cut(s) 27, 74, 198, 593, 1092, 1119, 1218, 1298
Zsp2I ATGCAT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.