RchiOBHm_Chr6g0264371

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000610
Physical Location & Seq
Forward (+)
19507756 .. 19508432
677 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23711

Sequence Viewer

Length: 402 bp
ATGATGCCTCAAATCGGGCTGCTTCAAGCTTATTACTTCAACACCAAGGGGGTATTTTCCACAGATTTCCCTGACCGCCCACCAACACCATTCAATTATACTGGTGCCCCACTCACTGCCAACCTTGGGACTAAACTAGGCACCTGGCTAAGCAAGATCGCCTTTAACTCGACATTAGAGTTGGTGCTACAAGATACCAATCTTCTCACTGTGGAATCCCATCCAATCCACCTTCATGGTTACAATTTTTTCATTGTTGGGACCGGCGTTGGTATGTGGTTCATGCACTGTCACTTGGAGCTGCATACTAGCTGGGGAATGAAGACTGCCTTTGTGGTAGAAAATGGGAAAGGCTCAAATCAATCTATCCTACCTCCAACTGTAGACCTTCCACCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

6.26

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 22 - 92 3.4e-10 Multicopper oxidase
Cu-oxidase_2 PF07731 90 - 116 1.2e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 104, 140
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 14, 126
AgsI TTSAA 3 cut(s) 26, 40, 94
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 29, 301, 312
AluI AGCT 3 cut(s) 29, 301, 312
ApeKI GCWGC 2 cut(s) 19, 301
AspS9I GGNCC 1 cut(s) 261
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 2 cut(s) 104, 140
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 6, 288
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 137, 309
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 2 cut(s) 20, 302
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 2 cut(s) 21, 303
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 3 cut(s) 106, 142, 262
BmrFI CCNGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 45, 124
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 126
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 45, 124
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 14, 126
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 2 cut(s) 6, 288
BseYI CCCAGC 1 cut(s) 312
BshNI GGYRCC 2 cut(s) 104, 140
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 2 cut(s) 142, 274
BslI CCNNNNNNNGG 2 cut(s) 14, 126
BsmFI GGGAC 2 cut(s) 142, 274
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 149
BspACI CCGC 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 106, 142, 262
BspT107I GGYRCC 2 cut(s) 104, 140
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 45, 124
BssMI GATC 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 45, 124
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 211, 290, 382
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 6, 288
BstV2I GAAGAC 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 114, 207, 286
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 2 cut(s) 236, 283
CviJI RGCY 6 cut(s) 19, 29, 148, 301, 312, 354
CviKI_1 RGCY 6 cut(s) 19, 29, 148, 301, 312, 354
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 45, 124
Eco47I GGWCC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 45, 124
ErhI CCWWGG 2 cut(s) 45, 124
FaeI CATG 2 cut(s) 239, 286
FaiI YATR 5 cut(s) 99, 237, 275, 284, 306
FalI AAGNNNNNCTT 4 cut(s) 146, 178, 314, 346
FaqI GGGAC 2 cut(s) 142, 274
FatI CATG 2 cut(s) 235, 282
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 20, 302
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 20, 302
FspBI CTAG 2 cut(s) 137, 309
GluI GCNGC 2 cut(s) 20, 302
GsaI CCCAGC 1 cut(s) 316
HapII CCGG 1 cut(s) 264
Hin1II CATG 2 cut(s) 239, 286
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 215
HpaII CCGG 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 242, 398
HpyCH4III ACNGT 3 cut(s) 211, 290, 382
HpyCH4V TGCA 2 cut(s) 286, 304
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 2 cut(s) 239, 286
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 84, 87, 130, 157, 277, 298
Lsp1109I GCAGC 2 cut(s) 6, 288
MaeI CTAG 2 cut(s) 137, 309
MaeIII GTNAC 2 cut(s) 239, 290
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 194, 334
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 94, 244
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 2 cut(s) 18, 384
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 239, 286
NlaIV GGNNCC 3 cut(s) 106, 142, 262
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 2 cut(s) 21, 303
Psp6I CCWGG 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 106, 142, 262
PspPI GGNCC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 20, 302
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 109
SetI ASST 9 cut(s) 31, 126, 146, 234, 303, 314, 376, 390, 397
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 2 cut(s) 94, 244
SsiI CCGC 1 cut(s) 76
SspMI CTAG 2 cut(s) 137, 309
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 45, 124
TaaI ACNGT 3 cut(s) 211, 290, 382
TaqI TCGA 1 cut(s) 170
TasI AATT 2 cut(s) 94, 244
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 121, 214, 293
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 19, 301
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 224, 241, 271, 335
TspRI CASTG 3 cut(s) 121, 214, 293
VpaK11BI GGWCC 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 137, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.