pycom10g02940

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000610
Physical Location & Seq
Reverse (-)
3285086 .. 3285705
620 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02940.1

Sequence Viewer

Length: 450 bp
ATGGTGCAGGAGTTGAGATCATCTTCCAAGGAACCAACATCATCGCACCTGAGAACCATCCAATGCATCTCCATGGTTTCAGCTTCTATTTGGTCGGAACTGGTTCCGGAAATTTTGACAGGACAACATCACCCAAGACCTACAATTTGGTCGATCCCCCAGAAGTTAACACCATTGGAGTTCCAAAGAATGGATGGGCAACAATCAGATTTACAGCCGATAATCCTGGTAAATTCTATAATTTTGAGCACAACAACCATCACAATGTCACATGCATGGCCTTTCTACTGGCGAACGGCCATATTTTATAGAGTATGGTTTATGCATTGTCATTTGGAAAGACATACCAGCTGGGGAATGGATACTGTGCTCATAGTGAGGAATGGAAATACAACAGAAACCAGCATTCGCCCACCGCCTGCTTATATGCCTCCTTGTTCCAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

8.58

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 76 - 129 6.1e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 190
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 416
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 2 cut(s) 111, 232
AfiI CCNNNNNNNGG 1 cut(s) 190
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 83, 351
AluI AGCT 2 cut(s) 83, 351
Alw21I GWGCWC 2 cut(s) 251, 372
AlwI GGATC 1 cut(s) 148
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 278, 297
ApoI RAATTY 2 cut(s) 111, 232
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
Asp700I GAANNNNTTC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 251, 372
BccI CCATC 3 cut(s) 65, 188, 266
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 355
BfuI GTATCC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 33, 105
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 27, 72
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 105, 293
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 27, 72
BseGI GGATG 2 cut(s) 57, 199
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 105, 293
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 280, 299
BsiHKAI GWGCWC 2 cut(s) 251, 372
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 190
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 280, 299
Bsp1286I GDGCHC 2 cut(s) 251, 372
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 17, 153
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 280, 299
BspCNI CTCAG 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 33, 105
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 105, 293
BssECI CCNNGG 2 cut(s) 27, 72
BssMI GATC 2 cut(s) 17, 153
BssT1I CCWWGG 2 cut(s) 27, 72
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 50, 447
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 57, 199
BstKTI GATC 2 cut(s) 20, 156
BstMBI GATC 2 cut(s) 17, 153
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 225
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 280, 299
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 57, 199
Cac8I GCNNGC 1 cut(s) 420
CviAII CATG 3 cut(s) 73, 272, 276
CviJI RGCY 5 cut(s) 83, 217, 280, 299, 351
CviKI_1 RGCY 5 cut(s) 83, 217, 280, 299, 351
DdeI CTNAG 2 cut(s) 50, 447
DpnI GATC 2 cut(s) 19, 155
DpnII GATC 2 cut(s) 17, 153
EaeI YGGCCR 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 27, 72
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 27, 72
EcoT22I ATGCAT 3 cut(s) 68, 277, 327
ErhI CCWWGG 2 cut(s) 27, 72
FaeI CATG 3 cut(s) 76, 275, 279
FatI CATG 3 cut(s) 72, 271, 275
FokI GGATG 2 cut(s) 44, 206
GsaI CCCAGC 1 cut(s) 355
HaeIII GGCC 2 cut(s) 280, 299
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 76, 275, 279
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HpaI GTTAAC 1 cut(s) 168
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 97, 208
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 7, 66, 275, 325
HpyF3I CTNAG 2 cut(s) 50, 447
Hsp92II CATG 3 cut(s) 76, 275, 279
Kpn2I TCCGGA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 17, 153
LweI GCATC 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 267
MalI GATC 2 cut(s) 19, 155
MboI GATC 2 cut(s) 17, 153
MboII GAAGA 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 251, 372
MluCI AATT 4 cut(s) 111, 144, 232, 240
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 372, 441
Mph1103I ATGCAT 3 cut(s) 68, 277, 327
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 3 cut(s) 71, 263, 274
MspA1I CMGCKG 1 cut(s) 351
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 227
NcoI CCATGG 1 cut(s) 72
NdeII GATC 2 cut(s) 17, 153
NlaIII CATG 3 cut(s) 76, 275, 279
NlaIV GGNNCC 2 cut(s) 33, 105
NmuCI GTSAC 1 cut(s) 267
NsiI ATGCAT 3 cut(s) 68, 277, 327
NspI RCATGY 1 cut(s) 275
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 33, 105
PvuII CAGCTG 1 cut(s) 351
RseI CAYNNNNRTG 3 cut(s) 71, 263, 274
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 2 cut(s) 17, 153
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 251, 372
SetI ASST 4 cut(s) 51, 85, 142, 353
SfaNI GCATC 1 cut(s) 75
SmiMI CAYNNNNRTG 3 cut(s) 71, 263, 274
Sse9I AATT 4 cut(s) 111, 144, 232, 240
SsiI CCGC 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 2 cut(s) 27, 72
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 152
TasI AATT 4 cut(s) 111, 144, 232, 240
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 190
XapI RAATTY 2 cut(s) 111, 232
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 2 cut(s) 191, 355
XmnI GAANNNNTTC 1 cut(s) 102
Zsp2I ATGCAT 3 cut(s) 68, 277, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.