Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 749 |
| AccB1I | GGYRCC | 1 cut(s) | 470 |
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AciI | CCGC | 4 cut(s) | 444, 554, 622, 659 |
| AclI | AACGTT | 1 cut(s) | 786 |
| AclWI | GGATC | 1 cut(s) | 1308 |
| AcoI | YGGCCR | 1 cut(s) | 835 |
| AcsI | RAATTY | 1 cut(s) | 107 |
| AcuI | CTGAAG | 1 cut(s) | 274 |
| AfaI | GTAC | 2 cut(s) | 509, 937 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 844, 1148, 1149 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AgsI | TTSAA | 9 cut(s) | 217, 230, 544, 777, 882, 1039, 1102, 1121, 1237 |
| AhlI | ACTAGT | 2 cut(s) | 965, 992 |
| AjnI | CCWGG | 2 cut(s) | 181, 1183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 401, 433 |
| AleI | CACNNNNGTG | 1 cut(s) | 968 |
| AluBI | AGCT | 6 cut(s) | 220, 233, 627, 910, 1227, 1267 |
| AluI | AGCT | 6 cut(s) | 220, 233, 627, 910, 1227, 1267 |
| Alw26I | GTCTC | 1 cut(s) | 65 |
| AlwI | GGATC | 1 cut(s) | 1308 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 332 |
| Ama87I | CYCGRG | 1 cut(s) | 376 |
| AoxI | GGCC | 4 cut(s) | 185, 449, 835, 903 |
| ApaI | GGGCCC | 1 cut(s) | 907 |
| ApeKI | GCWGC | 7 cut(s) | 266, 494, 624, 721, 724, 770, 982 |
| ApoI | RAATTY | 1 cut(s) | 107 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 578, 610 |
| AspA2I | CCTAGG | 1 cut(s) | 1091 |
| AspLEI | GCGC | 1 cut(s) | 255 |
| AspS9I | GGNCC | 4 cut(s) | 185, 749, 903, 904 |
| AsuC2I | CCSGG | 3 cut(s) | 377, 378, 575 |
| AsuHPI | GGTGA | 1 cut(s) | 1144 |
| AvaI | CYCGRG | 1 cut(s) | 376 |
| AvaII | GGWCC | 1 cut(s) | 749 |
| AvrII | CCTAGG | 1 cut(s) | 1091 |
| BaeGI | GKGCMC | 1 cut(s) | 907 |
| BalI | TGGCCA | 1 cut(s) | 837 |
| BanI | GGYRCC | 1 cut(s) | 470 |
| BanII | GRGCYC | 1 cut(s) | 907 |
| BbsI | GAAGAC | 1 cut(s) | 245 |
| BbvI | GCAGC | 7 cut(s) | 278, 481, 636, 733, 736, 757, 969 |
| BccI | CCATC | 3 cut(s) | 1023, 1234, 1253 |
| BciT130I | CCWGG | 2 cut(s) | 183, 1185 |
| BciVI | GTATCC | 1 cut(s) | 202 |
| BclI | TGATCA | 1 cut(s) | 258 |
| BcnI | CCSGG | 3 cut(s) | 377, 378, 575 |
| BcoDI | GTCTC | 1 cut(s) | 65 |
| BcuI | ACTAGT | 2 cut(s) | 965, 992 |
| BfaI | CTAG | 8 cut(s) | 201, 467, 503, 966, 993, 1092, 1172, 1224 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BfuAI | ACCTGC | 1 cut(s) | 749 |
| BfuI | GTATCC | 1 cut(s) | 202 |
| BisI | GCNGC | 7 cut(s) | 267, 495, 625, 722, 725, 771, 983 |
| BlnI | CCTAGG | 1 cut(s) | 1091 |
| BlsI | GCNGC | 7 cut(s) | 268, 496, 626, 723, 726, 772, 984 |
| Bme1390I | CCNGG | 5 cut(s) | 183, 377, 378, 575, 1185 |
| Bme18I | GGWCC | 1 cut(s) | 749 |
| BmeT110I | CYCGRG | 1 cut(s) | 376 |
| BmgT120I | GGNCC | 4 cut(s) | 185, 749, 903, 904 |
| BmiI | GGNNCC | 6 cut(s) | 472, 703, 751, 760, 904, 905 |
| BmrFI | CCNGG | 5 cut(s) | 183, 377, 378, 575, 1185 |
| BmsI | GCATC | 1 cut(s) | 939 |
| BpiI | GAAGAC | 1 cut(s) | 245 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| BpuMI | CCSGG | 3 cut(s) | 377, 378, 575 |
| BsaAI | YACGTR | 1 cut(s) | 457 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 6 cut(s) | 182, 375, 376, 745, 1091, 1183 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 540, 555, 570, 585 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 844, 1148, 1149 |
| Bse1I | ACTGG | 2 cut(s) | 466, 1302 |
| Bse3DI | GCAATG | 4 cut(s) | 294, 369, 937, 1201 |
| BseBI | CCWGG | 2 cut(s) | 183, 1185 |
| BseDI | CCNNGG | 6 cut(s) | 182, 375, 376, 745, 1091, 1183 |
| BseGI | GGATG | 1 cut(s) | 1015 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 844, 1148, 1149 |
| BseMI | GCAATG | 4 cut(s) | 294, 369, 937, 1201 |
| BseNI | ACTGG | 2 cut(s) | 466, 1302 |
| BseSI | GKGCMC | 1 cut(s) | 907 |
| BseXI | GCAGC | 7 cut(s) | 278, 481, 636, 733, 736, 757, 969 |
| BseYI | CCCAGC | 4 cut(s) | 233, 646, 906, 1227 |
| BshFI | GGCC | 4 cut(s) | 187, 451, 837, 905 |
| BshNI | GGYRCC | 1 cut(s) | 470 |
| BsiHKCI | CYCGRG | 1 cut(s) | 376 |
| BsiSI | CCGG | 2 cut(s) | 377, 575 |
| BslFI | GGGAC | 2 cut(s) | 393, 641 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 844, 1148, 1149 |
| BsmAI | GTCTC | 1 cut(s) | 65 |
| BsmFI | GGGAC | 2 cut(s) | 393, 641 |
| BsnI | GGCC | 4 cut(s) | 187, 451, 837, 905 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| BsoBI | CYCGRG | 1 cut(s) | 376 |
| Bsp120I | GGGCCC | 1 cut(s) | 903 |
| Bsp1286I | GDGCHC | 1 cut(s) | 907 |
| Bsp143I | GATC | 3 cut(s) | 258, 870, 1300 |
| BspACI | CCGC | 4 cut(s) | 444, 554, 622, 659 |
| BspANI | GGCC | 4 cut(s) | 187, 451, 837, 905 |
| BspHI | TCATGA | 1 cut(s) | 438 |
| BspLI | GGNNCC | 6 cut(s) | 472, 703, 751, 760, 904, 905 |
| BspMI | ACCTGC | 1 cut(s) | 749 |
| BspPI | GGATC | 1 cut(s) | 1308 |
| BspQI | GCTCTTC | 1 cut(s) | 18 |
| BspT107I | GGYRCC | 1 cut(s) | 470 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 4 cut(s) | 294, 369, 937, 1201 |
| BsrI | ACTGG | 2 cut(s) | 466, 1302 |
| BssECI | CCNNGG | 6 cut(s) | 182, 375, 376, 745, 1091, 1183 |
| BssMI | GATC | 3 cut(s) | 258, 870, 1300 |
| BssT1I | CCWWGG | 2 cut(s) | 745, 1091 |
| Bst2UI | CCWGG | 2 cut(s) | 183, 1185 |
| Bst4CI | ACNGT | 3 cut(s) | 166, 490, 1132 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 1026 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstBAI | YACGTR | 1 cut(s) | 457 |
| BstC8I | GCNNGC | 3 cut(s) | 88, 613, 719 |
| BstDEI | CTNAG | 1 cut(s) | 1255 |
| BstF5I | GGATG | 1 cut(s) | 1015 |
| BstHHI | GCGC | 1 cut(s) | 255 |
| BstKTI | GATC | 3 cut(s) | 261, 873, 1303 |
| BstMAI | GTCTC | 1 cut(s) | 65 |
| BstMBI | GATC | 3 cut(s) | 258, 870, 1300 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 621 |
| BstNI | CCWGG | 2 cut(s) | 183, 1185 |
| BstSCI | CCNGG | 5 cut(s) | 181, 375, 376, 573, 1183 |
| BstSLI | GKGCMC | 1 cut(s) | 907 |
| BstV1I | GCAGC | 7 cut(s) | 278, 481, 636, 733, 736, 757, 969 |
| BstV2I | GAAGAC | 1 cut(s) | 245 |
| BstX2I | RGATCY | 1 cut(s) | 1300 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 833, 1191 |
| BstYI | RGATCY | 1 cut(s) | 1300 |
| BsuI | GTATCC | 1 cut(s) | 202 |
| BsuRI | GGCC | 4 cut(s) | 187, 451, 837, 905 |
| BtsCI | GGATG | 1 cut(s) | 1015 |
| BtsI | GCAGTG | 1 cut(s) | 807 |
| BtsIMutI | CAGTG | 4 cut(s) | 269, 486, 807, 1295 |
| BveI | ACCTGC | 1 cut(s) | 749 |
| Cac8I | GCNNGC | 3 cut(s) | 88, 613, 719 |
| CaiI | CAGNNNCTG | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 438 |
| CfoI | GCGC | 1 cut(s) | 255 |
| Cfr13I | GGNCC | 4 cut(s) | 185, 749, 903, 904 |
| Cfr9I | CCCGGG | 1 cut(s) | 376 |
| CseI | GACGC | 1 cut(s) | 338 |
| Csp6I | GTAC | 2 cut(s) | 508, 936 |
| CviAII | CATG | 5 cut(s) | 439, 711, 763, 1031, 1198 |
| CviQI | GTAC | 2 cut(s) | 508, 936 |
| DdeI | CTNAG | 1 cut(s) | 1255 |
| DpnI | GATC | 3 cut(s) | 260, 872, 1302 |
| DpnII | GATC | 3 cut(s) | 258, 870, 1300 |
| EaeI | YGGCCR | 1 cut(s) | 835 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 1026 |
| EarI | CTCTTC | 2 cut(s) | 18, 1026 |
| Eco130I | CCWWGG | 2 cut(s) | 745, 1091 |
| Eco24I | GRGCYC | 1 cut(s) | 907 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco32I | GATATC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 1 cut(s) | 749 |
| Eco57I | CTGAAG | 1 cut(s) | 274 |
| Eco88I | CYCGRG | 1 cut(s) | 376 |
| EcoO109I | RGGNCCY | 2 cut(s) | 749, 903 |
| EcoRII | CCWGG | 2 cut(s) | 181, 1183 |
| EcoRV | GATATC | 1 cut(s) | 115 |
| EcoT14I | CCWWGG | 2 cut(s) | 745, 1091 |
| EcoT22I | ATGCAT | 1 cut(s) | 1203 |
| EcoT38I | GRGCYC | 1 cut(s) | 907 |
| ErhI | CCWWGG | 2 cut(s) | 745, 1091 |
| FaeI | CATG | 5 cut(s) | 442, 714, 766, 1034, 1201 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 401, 433 |
| FaqI | GGGAC | 2 cut(s) | 393, 641 |
| FatI | CATG | 5 cut(s) | 438, 710, 762, 1030, 1197 |
| FauI | CCCGC | 1 cut(s) | 666 |
| FbaI | TGATCA | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 7 cut(s) | 267, 495, 625, 722, 725, 771, 983 |
| FokI | GGATG | 1 cut(s) | 1002 |
| FriOI | GRGCYC | 1 cut(s) | 907 |
| Fsp4HI | GCNGC | 7 cut(s) | 267, 495, 625, 722, 725, 771, 983 |
| FspBI | CTAG | 8 cut(s) | 201, 467, 503, 966, 993, 1092, 1172, 1224 |
| GlaI | GCGC | 1 cut(s) | 254 |
| GluI | GCNGC | 7 cut(s) | 267, 495, 625, 722, 725, 771, 983 |
| GsaI | CCCAGC | 4 cut(s) | 237, 650, 910, 1231 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HaeIII | GGCC | 4 cut(s) | 187, 451, 837, 905 |
| HapII | CCGG | 2 cut(s) | 377, 575 |
| HgaI | GACGC | 1 cut(s) | 338 |
| HhaI | GCGC | 1 cut(s) | 255 |
| Hin1II | CATG | 5 cut(s) | 442, 714, 766, 1034, 1201 |
| Hin6I | GCGC | 1 cut(s) | 253 |
| HinP1I | GCGC | 1 cut(s) | 253 |
| HincII | GTYRAC | 2 cut(s) | 670, 1111 |
| HindII | GTYRAC | 2 cut(s) | 670, 1111 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 1 cut(s) | 1035 |
| HpaII | CCGG | 2 cut(s) | 377, 575 |
| HphI | GGTGA | 1 cut(s) | 1144 |
| Hpy166II | GTNNAC | 3 cut(s) | 169, 670, 1111 |
| Hpy188I | TCNGA | 1 cut(s) | 870 |
| Hpy188III | TCNNGA | 3 cut(s) | 439, 503, 638 |
| Hpy8I | GTNNAC | 3 cut(s) | 169, 670, 1111 |
| Hpy99I | CGWCG | 1 cut(s) | 281 |
| HpyAV | CCTTC | 2 cut(s) | 257, 888 |
| HpyCH4III | ACNGT | 3 cut(s) | 166, 490, 1132 |
| HpyCH4IV | ACGT | 3 cut(s) | 456, 654, 786 |
| HpyCH4V | TGCA | 8 cut(s) | 86, 124, 266, 299, 599, 820, 985, 1201 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 621 |
| HpyF3I | CTNAG | 1 cut(s) | 1255 |
| HpySE526I | ACGT | 3 cut(s) | 456, 654, 786 |
| Hsp92II | CATG | 5 cut(s) | 442, 714, 766, 1034, 1201 |
| HspAI | GCGC | 1 cut(s) | 253 |
| Ksp22I | TGATCA | 1 cut(s) | 258 |
| Kzo9I | GATC | 3 cut(s) | 258, 870, 1300 |
| LguI | GCTCTTC | 1 cut(s) | 18 |
| LmnI | GCTCC | 1 cut(s) | 561 |
| Lsp1109I | GCAGC | 7 cut(s) | 278, 481, 636, 733, 736, 757, 969 |
| LweI | GCATC | 1 cut(s) | 939 |
| MaeI | CTAG | 8 cut(s) | 201, 467, 503, 966, 993, 1092, 1172, 1224 |
| MaeII | ACGT | 3 cut(s) | 456, 654, 786 |
| MaeIII | GTNAC | 3 cut(s) | 130, 160, 457 |
| MalI | GATC | 3 cut(s) | 260, 872, 1302 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 3 cut(s) | 258, 870, 1300 |
| MboII | GAAGA | 9 cut(s) | 5, 250, 280, 389, 676, 1013, 1019, 1249, 1295 |
| MflI | RGATCY | 1 cut(s) | 1300 |
| MhlI | GDGCHC | 1 cut(s) | 907 |
| MlsI | TGGCCA | 1 cut(s) | 837 |
| MluCI | AATT | 7 cut(s) | 107, 176, 192, 567, 882, 892, 1081 |
| MluNI | TGGCCA | 1 cut(s) | 837 |
| MmeI | TCCRAC | 1 cut(s) | 142 |
| MnlI | CCTC | 8 cut(s) | 78, 198, 199, 320, 545, 1029, 1153, 1299 |
| Mox20I | TGGCCA | 1 cut(s) | 837 |
| Mph1103I | ATGCAT | 1 cut(s) | 1203 |
| MscI | TGGCCA | 1 cut(s) | 837 |
| MseI | TTAA | 5 cut(s) | 222, 342, 629, 891, 960 |
| MslI | CAYNNNNRTG | 2 cut(s) | 968, 1029 |
| Msp20I | TGGCCA | 1 cut(s) | 837 |
| MspA1I | CMGCKG | 1 cut(s) | 910 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MspI | CCGG | 2 cut(s) | 377, 575 |
| MspR9I | CCNGG | 5 cut(s) | 183, 377, 378, 575, 1185 |
| MvaI | CCWGG | 2 cut(s) | 183, 1185 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 621 |
| NciI | CCSGG | 3 cut(s) | 377, 378, 575 |
| NdeII | GATC | 3 cut(s) | 258, 870, 1300 |
| NlaIII | CATG | 5 cut(s) | 442, 714, 766, 1034, 1201 |
| NlaIV | GGNNCC | 6 cut(s) | 472, 703, 751, 760, 904, 905 |
| NmuCI | GTSAC | 2 cut(s) | 130, 457 |
| NsiI | ATGCAT | 1 cut(s) | 1203 |
| OliI | CACNNNNGTG | 1 cut(s) | 968 |
| PagI | TCATGA | 1 cut(s) | 438 |
| PciSI | GCTCTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 1 cut(s) | 1035 |
| PkrI | GCNGC | 7 cut(s) | 268, 496, 626, 723, 726, 772, 984 |
| Ppu21I | YACGTR | 1 cut(s) | 457 |
| PpuMI | RGGWCCY | 1 cut(s) | 749 |
| Psp1406I | AACGTT | 1 cut(s) | 786 |
| Psp5II | RGGWCCY | 1 cut(s) | 749 |
| Psp6I | CCWGG | 2 cut(s) | 181, 1183 |
| PspFI | CCCAGC | 4 cut(s) | 233, 646, 906, 1227 |
| PspGI | CCWGG | 2 cut(s) | 181, 1183 |
| PspN4I | GGNNCC | 6 cut(s) | 472, 703, 751, 760, 904, 905 |
| PspOMI | GGGCCC | 1 cut(s) | 903 |
| PspPI | GGNCC | 4 cut(s) | 185, 749, 903, 904 |
| PspPPI | RGGWCCY | 1 cut(s) | 749 |
| PstNI | CAGNNNCTG | 1 cut(s) | 332 |
| PsuI | RGATCY | 1 cut(s) | 1300 |
| PvuII | CAGCTG | 1 cut(s) | 910 |
| RsaI | GTAC | 2 cut(s) | 509, 937 |
| RsaNI | GTAC | 2 cut(s) | 508, 936 |
| RseI | CAYNNNNRTG | 2 cut(s) | 968, 1029 |
| SapI | GCTCTTC | 1 cut(s) | 18 |
| SaqAI | TTAA | 5 cut(s) | 222, 342, 629, 891, 960 |
| SatI | GCNGC | 7 cut(s) | 267, 495, 625, 722, 725, 771, 983 |
| Sau3AI | GATC | 3 cut(s) | 258, 870, 1300 |
| Sau96I | GGNCC | 4 cut(s) | 185, 749, 903, 904 |
| ScrFI | CCNGG | 5 cut(s) | 183, 377, 378, 575, 1185 |
| SduI | GDGCHC | 1 cut(s) | 907 |
| SfaNI | GCATC | 1 cut(s) | 939 |
| SinI | GGWCC | 1 cut(s) | 749 |
| SmaI | CCCGGG | 1 cut(s) | 378 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 968, 1029 |
| SmlI | CTYRAG | 1 cut(s) | 221 |
| SmoI | CTYRAG | 1 cut(s) | 221 |
| SpeI | ACTAGT | 2 cut(s) | 965, 992 |
| Sse9I | AATT | 7 cut(s) | 107, 176, 192, 567, 882, 892, 1081 |
| SsiI | CCGC | 4 cut(s) | 444, 554, 622, 659 |
| SspMI | CTAG | 8 cut(s) | 201, 467, 503, 966, 993, 1092, 1172, 1224 |
| StyD4I | CCNGG | 5 cut(s) | 181, 375, 376, 573, 1183 |
| StyI | CCWWGG | 2 cut(s) | 745, 1091 |
| TaaI | ACNGT | 3 cut(s) | 166, 490, 1132 |
| TaiI | ACGT | 3 cut(s) | 459, 657, 789 |
| TaqI | TCGA | 2 cut(s) | 190, 321 |
| TasI | AATT | 7 cut(s) | 107, 176, 192, 567, 882, 892, 1081 |
| TfiI | GAWTC | 1 cut(s) | 1035 |
| Tru1I | TTAA | 5 cut(s) | 222, 342, 629, 891, 960 |
| Tru9I | TTAA | 5 cut(s) | 222, 342, 629, 891, 960 |
| TscAI | CASTG | 4 cut(s) | 276, 493, 814, 1302 |
| TseFI | GTSAC | 2 cut(s) | 130, 457 |
| TseI | GCWGC | 7 cut(s) | 266, 494, 624, 721, 724, 770, 982 |
| Tsp45I | GTSAC | 2 cut(s) | 130, 457 |
| TspDTI | ATGAA | 4 cut(s) | 37, 1013, 1019, 1186 |
| TspGWI | ACGGA | 2 cut(s) | 186, 945 |
| TspMI | CCCGGG | 1 cut(s) | 376 |
| TspRI | CASTG | 4 cut(s) | 276, 493, 814, 1302 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| VpaK11BI | GGWCC | 1 cut(s) | 749 |
| XapI | RAATTY | 1 cut(s) | 107 |
| XbaI | TCTAGA | 1 cut(s) | 502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 752 |
| XmaI | CCCGGG | 1 cut(s) | 376 |
| XmaJI | CCTAGG | 1 cut(s) | 1091 |
| XspI | CTAG | 8 cut(s) | 201, 467, 503, 966, 993, 1092, 1172, 1224 |
| Zsp2I | ATGCAT | 1 cut(s) | 1203 |