Rh6BG128700

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000610
Physical Location & Seq
Forward (+)
20025951 .. 20026319
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG128700.1

Sequence Viewer

Length: 369 bp
ATGATGCCTCAAATCGGGCTGCTTCAAGCTTATTACTTCAACACCAAGGGGGTATTTTCCACAGATTTCCCTGACCGCCCACCAACACCATTCAATTATACTGGTGCTCCACTCACTGCCAACCTTGGGACTAAACTAGGCACCTGGCTAAGCAAGATCACCTTTAACTCGACATTAGAGTTGGTGCTACAAGATACCAATCTTCTCACTGTGGAATCCCATCCAATCCACCTCCATGGTTACAATTTTTTCATTGTTGGGACCGGAGTTGGTAACATTGACCCCAAGAAGGACCCGGCTAAATTTAACTTGGTGGATCCTCCTGAAAGAAACACCGTGGAGTTCCCACCGGTGGTTGGGCTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

5.81

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 22 - 117 7.1e-19 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AciI CCGC 1 cut(s) 76
AclWI GGATC 2 cut(s) 311, 324
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 5 cut(s) 14, 126, 289, 352, 356
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 3 cut(s) 26, 40, 94
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 109
AlwI GGATC 2 cut(s) 311, 324
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 302
AsiGI ACCGGT 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 261, 292
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 2 cut(s) 261, 292
BamHI GGATCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 1 cut(s) 296
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 20
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 145, 296
Bme18I GGWCC 2 cut(s) 261, 292
BmgT120I GGNCC 2 cut(s) 261, 292
BmiI GGNNCC 4 cut(s) 142, 262, 294, 318
BmrFI CCNGG 2 cut(s) 145, 296
Bpu1102I GCTNAGC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 45, 124, 235, 336
BsaWI WCCGGW 2 cut(s) 263, 349
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 126, 289, 352, 356
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 45, 124, 235, 336
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 14, 126, 289, 352, 356
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 109
BsiSI CCGG 3 cut(s) 264, 296, 350
BslFI GGGAC 2 cut(s) 142, 274
BslI CCNNNNNNNGG 5 cut(s) 14, 126, 289, 352, 356
BsmFI GGGAC 2 cut(s) 142, 274
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 156, 316
Bsp1720I GCTNAGC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 1 cut(s) 76
BspLI GGNNCC 4 cut(s) 142, 262, 294, 318
BspPI GGATC 2 cut(s) 311, 324
BspT107I GGYRCC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 4 cut(s) 45, 124, 235, 336
BssMI GATC 2 cut(s) 156, 316
BssT1I CCWWGG 3 cut(s) 45, 124, 235
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 211, 337
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 2 cut(s) 235, 336
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 159, 319
BstMBI GATC 2 cut(s) 156, 316
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 143, 294
BstV1I GCAGC 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 316
BtgI CCRYGG 2 cut(s) 235, 336
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 207
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 261, 292
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 19, 29, 148, 299, 361
CviKI_1 RGCY 5 cut(s) 19, 29, 148, 299, 361
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 158, 318
DpnII GATC 2 cut(s) 156, 316
Eco130I CCWWGG 3 cut(s) 45, 124, 235
Eco47I GGWCC 2 cut(s) 261, 292
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 45, 124, 235
ErhI CCWWGG 3 cut(s) 45, 124, 235
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 99, 237, 367
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 2 cut(s) 142, 274
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 20
HapII CCGG 3 cut(s) 264, 296, 350
Hin1II CATG 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 215
HpaII CCGG 3 cut(s) 264, 296, 350
HphI GGTGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 211, 337
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 156, 316
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 84, 87, 130, 157, 277, 309, 336, 363
Lsp1109I GCAGC 1 cut(s) 6
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 239, 272
MalI GATC 2 cut(s) 158, 318
MboI GATC 2 cut(s) 156, 316
MboII GAAGA 1 cut(s) 194
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 3 cut(s) 94, 244, 302
MnlI CCTC 3 cut(s) 18, 242, 330
MseI TTAA 2 cut(s) 165, 306
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 3 cut(s) 264, 296, 350
MspR9I CCNGG 2 cut(s) 145, 296
MvaI CCWGG 1 cut(s) 145
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 235
NdeII GATC 2 cut(s) 156, 316
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 4 cut(s) 142, 262, 294, 318
PfeI GAWTC 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 4 cut(s) 142, 262, 294, 318
PspPI GGNCC 2 cut(s) 261, 292
PspPPI RGGWCCY 1 cut(s) 292
PsuI RGATCY 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 165, 306
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 156, 316
Sau96I GGNCC 2 cut(s) 261, 292
ScrFI CCNGG 2 cut(s) 145, 296
SduI GDGCHC 1 cut(s) 109
SetI ASST 5 cut(s) 31, 126, 146, 164, 234
SgrAI CRCCGGYG 1 cut(s) 349
SinI GGWCC 2 cut(s) 261, 292
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 3 cut(s) 94, 244, 302
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 143, 294
StyI CCWWGG 3 cut(s) 45, 124, 235
TaaI ACNGT 2 cut(s) 211, 337
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 94, 244, 302
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 165, 306
Tru9I TTAA 2 cut(s) 165, 306
TscAI CASTG 2 cut(s) 121, 214
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 2 cut(s) 121, 214
VpaK11BI GGWCC 2 cut(s) 261, 292
XapI RAATTY 1 cut(s) 302
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.