MD04G1131500.v1.1

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000610
Physical Location & Seq
Reverse (-)
21832691 .. 21838704
6014 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1131500.v1.1.491

Sequence Viewer

Length: 1800 bp
ATGTCACACTCCATTGGTACCCAGTTCTTTGAGATCAGAGAGATGGGTTTTAATCTTCCTTCATCAATAGCCTTCTCAATGGCCATCTTCTTTGCAGTTTGTGCATTTTTGTGCATGTTTCCTGAGCCTGCATTTGCAAAACATGCTAGATTTACTAGGCATTACAAGTTCAATATCAAGTTACAAAATGTGACAAGGCTTTGTCAAACCAAGAGCATTGTAACTGTCAACGGGCAGTTTCCGGGGCCTCGTATCATCGCAAGGGAAGGTGACAGGCTTGTGATCAAGGTGGTCAACCATGTTCAGCACAATCTCACCCTCCATTGGCATGGAGTCAGGCAAATGAGGAGTGGATGGGCAGATGGACCAGCTTATATCACACAGTGCCCAATTCAGACAGGGCAGAGTTATGTCTATAACTTCACCATTACTGGTCAAAGAGGCACATTGTTTTGGCATGCCCACATCTCCTGGCTTAGGGCAACTGTATATGGACCTATTGTCATCCTCCCTAAAAGACACGTGCCTTATCCTTTCCCCCAACCTTTCAAAGAAGTTCCCATCATTTTCGGAGAATGGTGGAAAGCAGACACAGAAACAGTCATCAGTCAAGCCTTACAAACAGGGTTGGGACCAAATGTTTCTGATGCCTATACCATCAATGGTCTTCCAGGTCCTTTATACAACTGCTCAGCAAAAGATACATACAAGCTCAAGGTGAAGCCGCGGAGGACATATCTGCTGCGGTTGATCAATGCTGCGCTCAACGACGAGCTCTTCTTCAGCATTTCCAATCACACCCTCACTGTGGTCGAAGCAGATGCAGTTTATGTGAAGCCTTTCAAAACCCAAACAGTTTTAATCACACCAGGACAGACCACAAATGTGCTTCTGAGGACCAAATCTAAGTCCCCAAATGCCAAATTTGTCATGGCAGCTCGGCCTTATGTGTCCGGCCCAGCTGCTTTTGACAACTCCACAACCACAGGATTACTAGAATACGAAGTTGCTTCTTCCTCAACCAACAACAAGAACAAGAAAAAGCAGCTTTTCACACCAGTCCTTCCAAAGCTCAATGACACATTGTTTTCCATGAAATACAACAAGAAAATTCTCAGCCTAGCCAATCCCAAATTCCCGGCAGCAAATGTTCCGAAAACTGTTCAAAAGCACTTCTTCTTCACTGTAGGGCTTGGAGTTCTCCCATGCTCAAAAAATCAGGCATGCCAAGGACCAAATAATACTAGGTTAGCAGCGGCCATTAACAACGTGACATTTGTCCAACCCAATACAGCTCTTCTGCAAGCTCATTTCTTCAACCAATCAAAAGGTGTGTACACCACAGATTTCCCTGCAAACCCAGCATTCAAGTTCAACTACACAGGCAGTCCACCCAGCAACATTGCCGTGAGCAGTGGAACTAAGGTGGTGGTGCTGCCTTTCAACACTACTGTGGAGGTTGTTTTGCAGGACACTAGCATTATTGGGGCGGAGAGCCACCCACTTCACCTCCATGGGTTTAATTTCTTTGTGCTGGGTTTGGGTTCTGGGAACTTTGATCCCAAAAATGACCCTAAAAAGTACAACCTTGTTGACCCTGCTGAGAGGAACACCGTTGGTGTGCCTTCTGGTGGCTGGGTTGCCATTCGATTCCTCGCCGATAATCCAGGTGTTTGGTTCATGCATTGCCACCTAGAAGTGCACACCAGCTGGGGCTTGAAGATGGCTTGGGTGGTCTTGGATGGAAAGAGACGCAACCAAAAGCTTCCTCCTCCACCGTCCGATCTTCCCAAGTGTTAG

Protein Analysis

600

Amino Acids

66.7

Weight (kDa)

9.75

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 59 - 172 1.4e-42 Multicopper oxidase
Cu-oxidase PF00394 185 - 335 1e-42 Multicopper oxidase
Cu-oxidase_2 PF07731 451 - 581 1e-41 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60020 AT5G60020 AT5G60020
fragaria_vesca FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 727
AciI CCGC 5 cut(s) 725, 727, 745, 1256, 1490
AclWI GGATC 1 cut(s) 1553
AcoI YGGCCR 2 cut(s) 81, 1257
AcsI RAATTY 3 cut(s) 923, 1110, 1133
AcuI CTGAAG 1 cut(s) 766
AcvI CACGTG 1 cut(s) 523
AdeI CACNNNGTG 1 cut(s) 384
AfaI GTAC 3 cut(s) 19, 1337, 1583
AfiI CCNNNNNNNGG 4 cut(s) 324, 477, 808, 1631
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 9 cut(s) 172, 550, 844, 1166, 1318, 1369, 1375, 1444, 1720
AhdI GACNNNNNGTC 1 cut(s) 500
AjnI CCWGG 4 cut(s) 470, 670, 868, 1666
AjuI GAANNNNNNNTTGG 2 cut(s) 1118, 1150
AleI CACNNNNGTG 2 cut(s) 884, 1451
Alw21I GWGCWC 2 cut(s) 777, 1704
Alw26I GTCTC 1 cut(s) 1744
Alw44I GTGCAC 1 cut(s) 1700
AlwI GGATC 1 cut(s) 1553
AoxI GGCC 5 cut(s) 81, 245, 941, 955, 1257
ApaLI GTGCAC 1 cut(s) 1700
ApeKI GCWGC 8 cut(s) 742, 758, 935, 962, 1045, 1142, 1253, 1435
ApoI RAATTY 3 cut(s) 923, 1110, 1133
Asp700I GAANNNNTTC 1 cut(s) 839
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 8 cut(s) 245, 365, 494, 632, 674, 897, 956, 1232
AsuC2I CCSGG 2 cut(s) 243, 1139
AsuHPI GGTGA 5 cut(s) 281, 307, 415, 730, 1499
AvaII GGWCC 6 cut(s) 365, 494, 632, 674, 897, 1232
BaeGI GKGCMC 2 cut(s) 389, 1704
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 777
BbrPI CACGTG 1 cut(s) 523
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 2 cut(s) 777, 1704
BbvI GCAGC 8 cut(s) 729, 745, 947, 949, 1057, 1154, 1265, 1422
BccI CCATC 8 cut(s) 37, 92, 348, 356, 569, 665, 1717, 1736
BceAI ACGGC 1 cut(s) 1391
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 4 cut(s) 472, 672, 870, 1668
BclI TGATCA 2 cut(s) 282, 750
BcnI CCSGG 2 cut(s) 243, 1139
BcoDI GTCTC 1 cut(s) 1744
BfaI CTAG 7 cut(s) 147, 156, 995, 1121, 1245, 1476, 1694
BfmI CTRYAG 1 cut(s) 1185
BlpI GCTNAGC 1 cut(s) 691
Bme1390I CCNGG 6 cut(s) 243, 472, 672, 870, 1139, 1668
Bme18I GGWCC 6 cut(s) 365, 494, 632, 674, 897, 1232
BmeRI GACNNNNNGTC 1 cut(s) 500
BmgT120I GGNCC 8 cut(s) 245, 365, 494, 632, 674, 897, 956, 1232
BmiI GGNNCC 3 cut(s) 19, 246, 633
BmrFI CCNGG 6 cut(s) 243, 472, 672, 870, 1139, 1668
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 2 cut(s) 637, 811
BmuI ACTGGG 1 cut(s) 16
BoxI GACNNNNGTC 1 cut(s) 1277
BpiI GAAGAC 1 cut(s) 659
Bpu10I CCTNAGC 2 cut(s) 123, 476
Bpu1102I GCTNAGC 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 2 cut(s) 243, 1139
BsaAI YACGTR 1 cut(s) 523
BsaJI CCNNGG 4 cut(s) 242, 725, 1228, 1513
BsaXI ACNNNNNCTCC 2 cut(s) 1494, 1524
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 477, 808, 1631
Bse1I ACTGG 3 cut(s) 22, 436, 1058
Bse3DI GCAATG 2 cut(s) 1401, 1684
BseBI CCWGG 4 cut(s) 472, 672, 870, 1668
BseDI CCNNGG 4 cut(s) 242, 725, 1228, 1513
BseGI GGATG 3 cut(s) 359, 504, 1747
BseLI CCNNNNNNNGG 4 cut(s) 324, 477, 808, 1631
BseMI GCAATG 2 cut(s) 1401, 1684
BseMII CTCAG 5 cut(s) 114, 705, 884, 1129, 1593
BseNI ACTGG 3 cut(s) 22, 436, 1058
BseRI GAGGAG 2 cut(s) 361, 1761
BseSI GKGCMC 2 cut(s) 389, 1704
BseXI GCAGC 8 cut(s) 729, 745, 947, 949, 1057, 1154, 1265, 1422
BseYI CCCAGC 6 cut(s) 958, 1360, 1394, 1534, 1635, 1710
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 5 cut(s) 83, 247, 943, 957, 1259
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 777, 1704
BsiSI CCGG 3 cut(s) 242, 954, 1139
BslFI GGGAC 2 cut(s) 645, 895
BslI CCNNNNNNNGG 4 cut(s) 324, 477, 808, 1631
BsmAI GTCTC 1 cut(s) 1744
BsmBI CGTCTC 1 cut(s) 1744
BsmFI GGGAC 2 cut(s) 645, 895
BsmI GAATGC 1 cut(s) 1364
BsnI GGCC 5 cut(s) 83, 247, 943, 957, 1259
Bsp1286I GDGCHC 3 cut(s) 389, 777, 1704
Bsp1407I TGTACA 1 cut(s) 1335
Bsp143I GATC 5 cut(s) 33, 282, 750, 1558, 1783
Bsp1720I GCTNAGC 1 cut(s) 691
Bsp19I CCATGG 1 cut(s) 1513
BspACI CCGC 5 cut(s) 725, 727, 745, 1256, 1490
BspANI GGCC 5 cut(s) 83, 247, 943, 957, 1259
BspCNI CTCAG 5 cut(s) 115, 704, 885, 1128, 1594
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 3 cut(s) 19, 246, 633
BspPI GGATC 1 cut(s) 1553
BspQI GCTCTTC 2 cut(s) 782, 1302
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 1401, 1684
BsrGI TGTACA 1 cut(s) 1335
BsrI ACTGG 3 cut(s) 22, 436, 1058
BssECI CCNNGG 4 cut(s) 242, 725, 1228, 1513
BssMI GATC 5 cut(s) 33, 282, 750, 1558, 1783
BssT1I CCWWGG 2 cut(s) 1228, 1513
Bst2UI CCWGG 4 cut(s) 472, 672, 870, 1668
Bst6I CTCTTC 2 cut(s) 782, 1302
BstAPI GCANNNNNTGC 2 cut(s) 101, 143
BstAUI TGTACA 1 cut(s) 1335
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 4 cut(s) 129, 459, 1225, 1305
BstDEI CTNAG 8 cut(s) 123, 476, 691, 893, 906, 1115, 1422, 1602
BstDSI CCRYGG 2 cut(s) 725, 1513
BstENI CCTNNNNNAGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 359, 504, 1747
BstFNI CGCG 1 cut(s) 727
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 5 cut(s) 36, 285, 753, 1561, 1786
BstMAI GTCTC 1 cut(s) 1744
BstMBI GATC 5 cut(s) 33, 282, 750, 1558, 1783
BstMWI GCNNNNNNNGC 3 cut(s) 101, 143, 1361
BstNI CCWGG 4 cut(s) 472, 672, 870, 1668
BstNSI RCATGY 4 cut(s) 118, 146, 461, 1227
BstPAI GACNNNNGTC 1 cut(s) 1277
BstSCI CCNGG 6 cut(s) 241, 470, 670, 868, 1137, 1666
BstSFI CTRYAG 1 cut(s) 1185
BstSLI GKGCMC 2 cut(s) 389, 1704
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 8 cut(s) 729, 745, 947, 949, 1057, 1154, 1265, 1422
BstV2I GAAGAC 1 cut(s) 659
BstXI CCANNNNNNTGG 2 cut(s) 329, 1674
BsuRI GGCC 5 cut(s) 83, 247, 943, 957, 1259
BtgI CCRYGG 2 cut(s) 725, 1513
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 359, 504, 1747
BtsI GCAGTG 1 cut(s) 1420
BtsIMutI CAGTG 4 cut(s) 389, 804, 1182, 1420
Cac8I GCNNGC 4 cut(s) 129, 459, 1225, 1305
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 8 cut(s) 245, 365, 494, 632, 674, 897, 956, 1232
Cfr42I CCGCGG 1 cut(s) 728
CseI GACGC 1 cut(s) 1761
Csp6I GTAC 3 cut(s) 18, 1336, 1582
CviQI GTAC 3 cut(s) 18, 1336, 1582
DdeI CTNAG 8 cut(s) 123, 476, 691, 893, 906, 1115, 1422, 1602
DpnI GATC 5 cut(s) 35, 284, 752, 1560, 1785
DpnII GATC 5 cut(s) 33, 282, 750, 1558, 1783
DraIII CACNNNGTG 1 cut(s) 384
DriI GACNNNNNGTC 1 cut(s) 500
EaeI YGGCCR 2 cut(s) 81, 1257
Eam1104I CTCTTC 2 cut(s) 782, 1302
Eam1105I GACNNNNNGTC 1 cut(s) 500
EarI CTCTTC 2 cut(s) 782, 1302
EciI GGCGGA 1 cut(s) 1505
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 2 cut(s) 1228, 1513
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 6 cut(s) 365, 494, 632, 674, 897, 1232
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 766
Eco72I CACGTG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 775
EcoNI CCTNNNNNAGG 1 cut(s) 475
EcoO109I RGGNCCY 2 cut(s) 245, 674
EcoRII CCWGG 4 cut(s) 470, 670, 868, 1666
EcoT14I CCWWGG 2 cut(s) 1228, 1513
EcoT22I ATGCAT 1 cut(s) 1686
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 1228, 1513
Esp3I CGTCTC 1 cut(s) 1744
FalI AAGNNNNNCTT 2 cut(s) 1160, 1192
FaqI GGGAC 2 cut(s) 645, 895
FbaI TGATCA 2 cut(s) 282, 750
FokI GGATG 3 cut(s) 366, 491, 1754
FriOI GRGCYC 1 cut(s) 777
FspBI CTAG 7 cut(s) 147, 156, 995, 1121, 1245, 1476, 1694
GlaI GCGC 1 cut(s) 762
GsaI CCCAGC 6 cut(s) 962, 1364, 1398, 1538, 1639, 1714
HaeIII GGCC 5 cut(s) 83, 247, 943, 957, 1259
HapII CCGG 3 cut(s) 242, 954, 1139
HgaI GACGC 1 cut(s) 1761
HhaI GCGC 1 cut(s) 763
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 3 cut(s) 229, 295, 1594
HindII GTYRAC 3 cut(s) 229, 295, 1594
HindIII AAGCTT 1 cut(s) 1763
HinfI GANTC 2 cut(s) 333, 1650
HpaII CCGG 3 cut(s) 242, 954, 1139
HphI GGTGA 5 cut(s) 281, 307, 415, 730, 1499
Hpy166II GTNNAC 7 cut(s) 229, 295, 1336, 1338, 1391, 1594, 1702
Hpy188I TCNGA 7 cut(s) 38, 396, 572, 646, 894, 1155, 1783
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 7 cut(s) 229, 295, 1336, 1338, 1391, 1594, 1702
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 5 cut(s) 69, 82, 260, 1073, 1635
HpyCH4IV ACGT 2 cut(s) 522, 1269
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 143, 1361
HpyF3I CTNAG 8 cut(s) 123, 476, 691, 893, 906, 1115, 1422, 1602
HpySE526I ACGT 2 cut(s) 522, 1269
HspAI GCGC 1 cut(s) 761
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 2 cut(s) 282, 750
KspI CCGCGG 1 cut(s) 728
Kzo9I GATC 5 cut(s) 33, 282, 750, 1558, 1783
LguI GCTCTTC 2 cut(s) 782, 1302
Lsp1109I GCAGC 8 cut(s) 729, 745, 947, 949, 1057, 1154, 1265, 1422
LweI GCATC 2 cut(s) 637, 811
MaeI CTAG 7 cut(s) 147, 156, 995, 1121, 1245, 1476, 1694
MaeII ACGT 2 cut(s) 522, 1269
MaeIII GTNAC 6 cut(s) 3, 180, 190, 220, 269, 1270
MalI GATC 5 cut(s) 35, 284, 752, 1560, 1785
MboI GATC 5 cut(s) 33, 282, 750, 1558, 1783
MhlI GDGCHC 3 cut(s) 389, 777, 1704
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 5 cut(s) 390, 923, 1110, 1133, 1522
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 1306
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 1686
MroXI GAANNNNTTC 1 cut(s) 839
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 51, 860, 1263, 1521
MslI CAYNNNNRTG 6 cut(s) 109, 327, 884, 1406, 1451, 1512
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 4 cut(s) 727, 962, 1256, 1710
MspI CCGG 3 cut(s) 242, 954, 1139
MspR9I CCNGG 6 cut(s) 243, 472, 672, 870, 1139, 1668
Mva1269I GAATGC 1 cut(s) 1364
MvaI CCWGG 4 cut(s) 472, 672, 870, 1668
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 3 cut(s) 101, 143, 1361
NciI CCSGG 2 cut(s) 243, 1139
NcoI CCATGG 1 cut(s) 1513
NdeII GATC 5 cut(s) 33, 282, 750, 1558, 1783
NlaIV GGNNCC 3 cut(s) 19, 246, 633
NmeAIII GCCGAG 1 cut(s) 919
NmuCI GTSAC 4 cut(s) 3, 190, 269, 1270
NsiI ATGCAT 1 cut(s) 1686
NspI RCATGY 4 cut(s) 118, 146, 461, 1227
OliI CACNNNNGTG 2 cut(s) 884, 1451
PaeI GCATGC 2 cut(s) 461, 1227
PciSI GCTCTTC 2 cut(s) 782, 1302
PctI GAATGC 1 cut(s) 1364
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 1 cut(s) 1650
PleI GAGTC 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 523
PmlI CACGTG 1 cut(s) 523
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 674
PshAI GACNNNNGTC 1 cut(s) 1277
Psp124BI GAGCTC 1 cut(s) 777
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 4 cut(s) 470, 670, 868, 1666
PspCI CACGTG 1 cut(s) 523
PspFI CCCAGC 6 cut(s) 958, 1360, 1394, 1534, 1635, 1710
PspGI CCWGG 4 cut(s) 470, 670, 868, 1666
PspN4I GGNNCC 3 cut(s) 19, 246, 633
PspPI GGNCC 8 cut(s) 245, 365, 494, 632, 674, 897, 956, 1232
PspPPI RGGWCCY 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 962, 1710
RsaI GTAC 3 cut(s) 19, 1337, 1583
RsaNI GTAC 3 cut(s) 18, 1336, 1582
RseI CAYNNNNRTG 6 cut(s) 109, 327, 884, 1406, 1451, 1512
SacI GAGCTC 1 cut(s) 777
SacII CCGCGG 1 cut(s) 728
SapI GCTCTTC 2 cut(s) 782, 1302
SaqAI TTAA 4 cut(s) 51, 860, 1263, 1521
Sau3AI GATC 5 cut(s) 33, 282, 750, 1558, 1783
Sau96I GGNCC 8 cut(s) 245, 365, 494, 632, 674, 897, 956, 1232
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 6 cut(s) 243, 472, 672, 870, 1139, 1668
SduI GDGCHC 3 cut(s) 389, 777, 1704
SfaNI GCATC 2 cut(s) 637, 811
SfcI CTRYAG 1 cut(s) 1185
Sfr303I CCGCGG 1 cut(s) 728
SgrBI CCGCGG 1 cut(s) 728
SinI GGWCC 6 cut(s) 365, 494, 632, 674, 897, 1232
SmiMI CAYNNNNRTG 6 cut(s) 109, 327, 884, 1406, 1451, 1512
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SphI GCATGC 2 cut(s) 461, 1227
Sse9I AATT 5 cut(s) 390, 923, 1110, 1133, 1522
SsiI CCGC 5 cut(s) 725, 727, 745, 1256, 1490
SspMI CTAG 7 cut(s) 147, 156, 995, 1121, 1245, 1476, 1694
SstI GAGCTC 1 cut(s) 777
StyD4I CCNGG 6 cut(s) 241, 470, 670, 868, 1137, 1666
StyI CCWWGG 2 cut(s) 1228, 1513
TaiI ACGT 2 cut(s) 525, 1272
TaqI TCGA 2 cut(s) 813, 1648
TasI AATT 5 cut(s) 390, 923, 1110, 1133, 1522
TatI WGTACW 2 cut(s) 1335, 1581
TauI GCSGC 2 cut(s) 727, 1259
TfiI GAWTC 1 cut(s) 1650
Tru1I TTAA 4 cut(s) 51, 860, 1263, 1521
Tru9I TTAA 4 cut(s) 51, 860, 1263, 1521
TscAI CASTG 4 cut(s) 389, 811, 1189, 1420
TseFI GTSAC 4 cut(s) 3, 190, 269, 1270
TseI GCWGC 8 cut(s) 742, 758, 935, 962, 1045, 1142, 1253, 1435
Tsp45I GTSAC 4 cut(s) 3, 190, 269, 1270
TspDTI ATGAA 3 cut(s) 51, 1109, 1669
TspRI CASTG 4 cut(s) 389, 811, 1189, 1420
VneI GTGCAC 1 cut(s) 1700
VpaK11BI GGWCC 6 cut(s) 365, 494, 632, 674, 897, 1232
XagI CCTNNNNNAGG 1 cut(s) 475
XapI RAATTY 3 cut(s) 923, 1110, 1133
XceI RCATGY 4 cut(s) 118, 146, 461, 1227
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 7 cut(s) 147, 156, 995, 1121, 1245, 1476, 1694
Zsp2I ATGCAT 1 cut(s) 1686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.