Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000610

Physical Location & Seq

Genomic Coordinates Forward (+)

9173753 .. 9177492

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1106500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGGGAGTTCCTCTTCTTTCGTCACCAACACTTCTTAGACTCTTCCTCTTTTCTCTCATTACGTTGTGTCTCATTCCTCAACATGCTCTTGCAAGCATAACGAGGCACTACAAATTTGATATCAAACATCAAAATGTGACAAGACTATGCCACACAAAGAGCATTGTAACAGTAAACGGGCAATTTCCAGGGCCTCGAATTGTTGCTAGGGAGGGTGATCACGTCCTTATTAAAGTGGTTAATCATGTTCAAAACAACATTTCCATCCACTGGCATGGCATTCGACAACTTCGATCGGGGTGGGCTGATGGACCTGCATATGTTACCCAATGTCCTATACAAAAAGGCAATAACTATGTCTACAACTTCACCATTACAGGCCAAAGAGGCACTCTTTTCTGGCATGCTCATATATCATGGCTTAGATCAACTGTTTATGGTCCCTTGATCATACTTCCCAAACGCGGTGTACCTTACCCATTCGCTAAGCCCTACAAGGAGGTTCCGATCATCTTCGGAGAGTGGTGGAATGTAGACACTGAAGCTATTATTAGCCAAGCCTTGCAGACAGGTGGAGGGCCAAATGTCTCTAATGCTTATACCATCAATGGACTTCCAGGGCCCTTGTACAATTGTTCTGTCAAAGACACATTCAAGCTGAAGGTTCAATCTGGGAAGACTTACCTTCTCCGCCTAATCAACGCTGCGCTCAATGACGAGCTCTTCTTTAGCATTGCAAACCACACCCTCAAAGTGGTAGAAGCTGATGCGATCTATGTCAAACCCTTTGAGACCAACACAATTCTGATTGCCCCGGGGCAGACTACAAATGTTCTGCTCAAGACCAAAGCAAATTTCCCCAATGCCACATTTTTCATGACCGCTAGGCCATACGCGACTGGACTAGGAACCTTTGACAACTCCACTGTTGCTGCTATTTTAGAGTATGAATCACCCTCCAAAACCCTCCATTCAACCCTCCCAATGAAGAAGCTTCCGCTCTTCAAACCATTTATGCCTGCTCTAAACGACACATCATTTGCAACAAAGTTCAGCAACAAACTCCGTAGCTTAGCCAATGCACAATTCCCTGCTAATGTCCCCCAAAAGGTTGACAAACACTTTTTCTTTACAATAGGCCTTGGAACCAACCCATGCAGCAACAGTAACCAAACCTGCCAGGGACCTAATGGAACAATGTTTGCGGCTTCAGTCAATAACGTTTCTTTCGCAATGCCAACCACCGCTCTACTTCAAGCCCACTTCACCGGGCAATCAAATGGGGTTTACAGCCCTTACTTCCCAAGCAGTCCTTTAATTCCATTTAACTATACAGGCACCCCACCTAATAATACAATGGTTGGCAATGGTACAAAGCTAATGGTACTTCCATTCAACACTAGTGTGGAGTTGGTGATTCAGGACACAAGCATTCTGGGCGTCGAAAGCCACCCTCTTCATCTTCATGGATTTAATTTCTTTGTTGTTGGACAAGGGTTCGGGAACTTTGACCGGAATAAGGACCCTGCAAACTTCAATTTGGTCGATCCTATCGAAAGAAATACTGTGGGTGTGCCCTCTGGTGGATGGGTTGCAATACGATTCTTAGCAGATAACCCAGGTGTATGGTTCATGCATTGCCATTTGGAGATCCATACTAGTTGGGGCTTGAAGATGGCTTGGCTAGTCCTAGATGGAAAGCTTCCAAACCAGAAGTTGCTTCCTCCCCCAGCAGATCTTCCCACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

584

Amino Acids

64.42

Weight (kDa)

9.36

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	41 - 154	1.7e-42	Multicopper oxidase
Cu-oxidase	PF00394	167 - 318	2.3e-43	Multicopper oxidase
Cu-oxidase_2	PF07731	435 - 565	1.5e-41	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60020 AT5G60020 AT5G60020
fragaria_vesca	FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica	MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica	Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis	pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis	RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata	RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora	Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa	Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha	Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana	Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	322, 1184
AccB1I	GGYRCC	1 cut(s)	1337
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccBSI	CCGCTC	2 cut(s)	1000, 1247
AccI	GTMKAC	2 cut(s)	360, 534
AccII	CGCG	2 cut(s)	465, 896
AciI	CCGC	6 cut(s)	465, 691, 882, 998, 1205, 1245
AclI	AACGTT	1 cut(s)	1221
AclWI	GGATC	2 cut(s)	1541, 1645
AcsI	RAATTY	2 cut(s)	113, 853
AcuI	CTGAAG	3 cut(s)	561, 680, 1194
AcyI	GRCGYC	1 cut(s)	1440
AfaI	GTAC	4 cut(s)	471, 629, 1372, 1386
AfiI	CCNNNNNNNGG	6 cut(s)	270, 464, 754, 1108, 1519, 1583
AflIII	ACRYGT	1 cut(s)	1745
AgsI	TTSAA	9 cut(s)	251, 655, 668, 975, 1006, 1256, 1396, 1537, 1672
AhlI	ACTAGT	2 cut(s)	1400, 1658
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	4 cut(s)	187, 616, 1179, 1618
AjuI	GAANNNNNNNTTGG	4 cut(s)	839, 871, 1070, 1102
AleI	CACNNNNGTG	1 cut(s)	1403
AluBI	AGCT	8 cut(s)	545, 658, 721, 764, 994, 1071, 1378, 1702
AluI	AGCT	8 cut(s)	545, 658, 721, 764, 994, 1071, 1378, 1702
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	3 cut(s)	74, 592, 785
AlwI	GGATC	2 cut(s)	1541, 1645
Ama87I	CYCGRG	1 cut(s)	814
AoxI	GGCC	6 cut(s)	191, 379, 578, 620, 887, 1138
ApaI	GGGCCC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	704, 932, 1158
ApoI	RAATTY	2 cut(s)	113, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	8 cut(s)	191, 311, 440, 578, 620, 621, 1184, 1522
AsuC2I	CCSGG	3 cut(s)	815, 816, 1270
AsuHPI	GGTGA	6 cut(s)	15, 227, 361, 945, 1258, 1426
AvaI	CYCGRG	1 cut(s)	814
AvaII	GGWCC	4 cut(s)	311, 440, 1184, 1522
BaeGI	GKGCMC	2 cut(s)	624, 1578
BanI	GGYRCC	1 cut(s)	1337
BanII	GRGCYC	2 cut(s)	624, 723
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	691, 919, 1170
BccI	CCATC	6 cut(s)	272, 302, 611, 1581, 1669, 1688
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	4 cut(s)	189, 618, 1181, 1620
BclI	TGATCA	2 cut(s)	217, 447
BcnI	CCSGG	3 cut(s)	815, 816, 1270
BcoDI	GTCTC	3 cut(s)	74, 592, 785
BcuI	ACTAGT	2 cut(s)	1400, 1658
BfaI	CTAG	7 cut(s)	207, 885, 905, 1401, 1659, 1685, 1691
BfuAI	ACCTGC	2 cut(s)	322, 1184
BglI	GCCNNNNNGGC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	1735
BisI	GCNGC	4 cut(s)	705, 933, 1159, 1206
BlpI	GCTNAGC	2 cut(s)	486, 1072
BlsI	GCNGC	4 cut(s)	706, 934, 1160, 1207
Bme1390I	CCNGG	7 cut(s)	189, 618, 815, 816, 1181, 1270, 1620
Bme18I	GGWCC	4 cut(s)	311, 440, 1184, 1522
BmeT110I	CYCGRG	1 cut(s)	814
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	8 cut(s)	191, 311, 440, 578, 620, 621, 1184, 1522
BmiI	GGNNCC	8 cut(s)	442, 504, 622, 910, 1147, 1185, 1339, 1524
BmrFI	CCNGG	7 cut(s)	189, 618, 815, 816, 1181, 1270, 1620
BmsI	GCATC	1 cut(s)	757
BpiI	GAAGAC	1 cut(s)	683
Bpu1102I	GCTNAGC	2 cut(s)	486, 1072
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	3 cut(s)	815, 816, 1270
BsaHI	GRCGYC	1 cut(s)	1440
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	8 cut(s)	188, 617, 813, 814, 815, 1141, 1180, 1618
BsaWI	WCCGGW	1 cut(s)	1512
Bsc4I	CCNNNNNNNGG	6 cut(s)	270, 464, 754, 1108, 1519, 1583
Bse1I	ACTGG	2 cut(s)	275, 904
Bse3DI	GCAATG	4 cut(s)	732, 1239, 1372, 1636
BseBI	CCWGG	4 cut(s)	189, 618, 1181, 1620
BseDI	CCNNGG	8 cut(s)	188, 617, 813, 814, 815, 1141, 1180, 1618
BseGI	GGATG	2 cut(s)	264, 1592
BseLI	CCNNNNNNNGG	6 cut(s)	270, 464, 754, 1108, 1519, 1583
BseMI	GCAATG	4 cut(s)	732, 1239, 1372, 1636
BseNI	ACTGG	2 cut(s)	275, 904
BseSI	GKGCMC	2 cut(s)	624, 1578
BseXI	GCAGC	3 cut(s)	691, 919, 1170
BseYI	CCCAGC	1 cut(s)	1729
Bsh1236I	CGCG	2 cut(s)	465, 896
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	6 cut(s)	193, 381, 580, 622, 889, 1140
BshNI	GGYRCC	1 cut(s)	1337
BsiEI	CGRYCG	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	814
BsiSI	CCGG	3 cut(s)	815, 1269, 1513
BslFI	GGGAC	3 cut(s)	426, 1085, 1197
BslI	CCNNNNNNNGG	6 cut(s)	270, 464, 754, 1108, 1519, 1583
BsmAI	GTCTC	3 cut(s)	74, 592, 785
BsmFI	GGGAC	3 cut(s)	426, 1085, 1197
BsmI	GAATGC	2 cut(s)	279, 1431
BsnI	GGCC	6 cut(s)	193, 381, 580, 622, 889, 1140
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	1 cut(s)	814
Bsp120I	GGGCCC	1 cut(s)	620
Bsp1286I	GDGCHC	3 cut(s)	624, 723, 1578
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
Bsp1720I	GCTNAGC	2 cut(s)	486, 1072
BspACI	CCGC	6 cut(s)	465, 691, 882, 998, 1205, 1245
BspANI	GGCC	6 cut(s)	193, 381, 580, 622, 889, 1140
BspFNI	CGCG	2 cut(s)	465, 896
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	8 cut(s)	442, 504, 622, 910, 1147, 1185, 1339, 1524
BspMI	ACCTGC	2 cut(s)	322, 1184
BspPI	GGATC	2 cut(s)	1541, 1645
BspQI	GCTCTTC	2 cut(s)	728, 1007
BspT107I	GGYRCC	1 cut(s)	1337
BspTNI	GGTCTC	1 cut(s)	785
BsrBI	CCGCTC	2 cut(s)	1000, 1247
BsrDI	GCAATG	4 cut(s)	732, 1239, 1372, 1636
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	275, 904
BssECI	CCNNGG	8 cut(s)	188, 617, 813, 814, 815, 1141, 1180, 1618
BssMI	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
BssNI	GRCGYC	1 cut(s)	1440
BssT1I	CCWWGG	1 cut(s)	1141
Bst2UI	CCWGG	4 cut(s)	189, 618, 1181, 1620
Bst4CI	ACNGT	5 cut(s)	172, 433, 928, 1166, 1567
Bst6I	CTCTTC	5 cut(s)	18, 47, 728, 1007, 1461
BstACI	GRCGYC	1 cut(s)	1440
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	94, 405, 1020
BstDEI	CTNAG	5 cut(s)	35, 422, 486, 1072, 1606
BstF5I	GGATG	2 cut(s)	264, 1592
BstFNI	CGCG	2 cut(s)	465, 896
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	9 cut(s)	220, 296, 428, 450, 510, 774, 1549, 1653, 1738
BstMAI	GTCTC	3 cut(s)	74, 592, 785
BstMBI	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 1437, 1446
BstNI	CCWGG	4 cut(s)	189, 618, 1181, 1620
BstNSI	RCATGY	3 cut(s)	86, 407, 1749
BstSCI	CCNGG	7 cut(s)	187, 616, 813, 814, 1179, 1268, 1618
BstSLI	GKGCMC	2 cut(s)	624, 1578
BstUI	CGCG	2 cut(s)	465, 896
BstV1I	GCAGC	3 cut(s)	691, 919, 1170
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	1650, 1735
BstXI	CCANNNNNNTGG	2 cut(s)	275, 1626
BstYI	RGATCY	2 cut(s)	1650, 1735
BsuRI	GGCC	6 cut(s)	193, 381, 580, 622, 889, 1140
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	264, 1592
BtsIMutI	CAGTG	3 cut(s)	268, 537, 924
BveI	ACCTGC	2 cut(s)	322, 1184
Cac8I	GCNNGC	3 cut(s)	94, 405, 1020
CciI	TCATGA	1 cut(s)	876
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	8 cut(s)	191, 311, 440, 578, 620, 621, 1184, 1522
Cfr9I	CCCGGG	1 cut(s)	814
CseI	GACGC	1 cut(s)	1429
Csp6I	GTAC	4 cut(s)	470, 628, 1371, 1385
CviQI	GTAC	4 cut(s)	470, 628, 1371, 1385
DdeI	CTNAG	5 cut(s)	35, 422, 486, 1072, 1606
DpnI	GATC	9 cut(s)	219, 295, 427, 449, 509, 773, 1548, 1652, 1737
DpnII	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
Eam1104I	CTCTTC	5 cut(s)	18, 47, 728, 1007, 1461
EarI	CTCTTC	5 cut(s)	18, 47, 728, 1007, 1461
EciI	GGCGGA	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	1141
Eco147I	AGGCCT	1 cut(s)	1140
Eco24I	GRGCYC	2 cut(s)	624, 723
Eco31I	GGTCTC	1 cut(s)	785
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	4 cut(s)	311, 440, 1184, 1522
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	3 cut(s)	561, 680, 1194
Eco88I	CYCGRG	1 cut(s)	814
EcoICRI	GAGCTC	1 cut(s)	721
EcoO109I	RGGNCCY	5 cut(s)	191, 620, 621, 1184, 1522
EcoRII	CCWGG	4 cut(s)	187, 616, 1179, 1618
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	1141
EcoT22I	ATGCAT	1 cut(s)	1638
EcoT38I	GRGCYC	2 cut(s)	624, 723
ErhI	CCWWGG	1 cut(s)	1141
FalI	AAGNNNNNCTT	2 cut(s)	1297, 1329
FaqI	GGGAC	3 cut(s)	426, 1085, 1197
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	217, 447
FblI	GTMKAC	2 cut(s)	360, 534
Fnu4HI	GCNGC	4 cut(s)	705, 933, 1159, 1206
FokI	GGATG	2 cut(s)	251, 1599
FriOI	GRGCYC	2 cut(s)	624, 723
Fsp4HI	GCNGC	4 cut(s)	705, 933, 1159, 1206
FspBI	CTAG	7 cut(s)	207, 885, 905, 1401, 1659, 1685, 1691
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	4 cut(s)	705, 933, 1159, 1206
GsaI	CCCAGC	1 cut(s)	1733
HaeIII	GGCC	6 cut(s)	193, 381, 580, 622, 889, 1140
HapII	CCGG	3 cut(s)	815, 1269, 1513
HgaI	GACGC	1 cut(s)	1429
HhaI	GCGC	1 cut(s)	709
Hin1I	GRCGYC	1 cut(s)	1440
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	2 cut(s)	992, 1700
HinfI	GANTC	4 cut(s)	39, 950, 1417, 1602
HpaII	CCGG	3 cut(s)	815, 1269, 1513
HphI	GGTGA	6 cut(s)	15, 227, 361, 945, 1258, 1426
Hpy166II	GTNNAC	6 cut(s)	175, 361, 470, 535, 1114, 1288
Hpy188I	TCNGA	3 cut(s)	507, 518, 807
Hpy188III	TCNNGA	4 cut(s)	841, 877, 1421, 1501
Hpy8I	GTNNAC	6 cut(s)	175, 361, 470, 535, 1114, 1288
Hpy99I	CGWCG	1 cut(s)	1445
HpyAV	CCTTC	2 cut(s)	655, 695
HpyCH4III	ACNGT	5 cut(s)	172, 433, 928, 1166, 1567
HpyCH4IV	ACGT	3 cut(s)	62, 222, 1221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 1437, 1446
HpyF3I	CTNAG	5 cut(s)	35, 422, 486, 1072, 1606
HpySE526I	ACGT	3 cut(s)	62, 222, 1221
Hsp92I	GRCGYC	1 cut(s)	1440
HspAI	GCGC	1 cut(s)	707
Ksp22I	TGATCA	2 cut(s)	217, 447
Kzo9I	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
LguI	GCTCTTC	2 cut(s)	728, 1007
Lsp1109I	GCAGC	3 cut(s)	691, 919, 1170
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	7 cut(s)	207, 885, 905, 1401, 1659, 1685, 1691
MaeII	ACGT	3 cut(s)	62, 222, 1221
MaeIII	GTNAC	5 cut(s)	21, 136, 166, 322, 1166
MalI	GATC	9 cut(s)	219, 295, 427, 449, 509, 773, 1548, 1652, 1737
MbiI	CCGCTC	2 cut(s)	1000, 1247
MboI	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
MfeI	CAATTG	1 cut(s)	631
MflI	RGATCY	2 cut(s)	1650, 1735
MhlI	GDGCHC	3 cut(s)	624, 723, 1578
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	1468
Mph1103I	ATGCAT	1 cut(s)	1638
MseI	TTAA	6 cut(s)	231, 240, 1316, 1326, 1473, 1750
MslI	CAYNNNNRTG	4 cut(s)	132, 273, 1403, 1464
MspI	CCGG	3 cut(s)	815, 1269, 1513
MspR9I	CCNGG	7 cut(s)	189, 618, 815, 816, 1181, 1270, 1620
MunI	CAATTG	1 cut(s)	631
Mva1269I	GAATGC	2 cut(s)	279, 1431
MvaI	CCWGG	4 cut(s)	189, 618, 1181, 1620
MvnI	CGCG	2 cut(s)	465, 896
MwoI	GCNNNNNNNGC	3 cut(s)	387, 1437, 1446
NciI	CCSGG	3 cut(s)	815, 816, 1270
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
NlaIV	GGNNCC	8 cut(s)	442, 504, 622, 910, 1147, 1185, 1339, 1524
NmuCI	GTSAC	2 cut(s)	21, 136
NsiI	ATGCAT	1 cut(s)	1638
NspI	RCATGY	3 cut(s)	86, 407, 1749
OliI	CACNNNNGTG	1 cut(s)	1403
PaeI	GCATGC	1 cut(s)	407
PagI	TCATGA	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	1140
PciI	ACATGT	1 cut(s)	1745
PciSI	GCTCTTC	2 cut(s)	728, 1007
PcsI	WCGNNNNNNNCGW	2 cut(s)	289, 1551
PctI	GAATGC	2 cut(s)	279, 1431
PfeI	GAWTC	3 cut(s)	950, 1417, 1602
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	706, 934, 1160, 1207
Ple19I	CGATCG	1 cut(s)	296
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PpuMI	RGGWCCY	2 cut(s)	1184, 1522
PscI	ACATGT	1 cut(s)	1745
Psp124BI	GAGCTC	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	1221
Psp5II	RGGWCCY	2 cut(s)	1184, 1522
Psp6I	CCWGG	4 cut(s)	187, 616, 1179, 1618
PspFI	CCCAGC	1 cut(s)	1729
PspGI	CCWGG	4 cut(s)	187, 616, 1179, 1618
PspN4I	GGNNCC	8 cut(s)	442, 504, 622, 910, 1147, 1185, 1339, 1524
PspOMI	GGGCCC	1 cut(s)	620
PspPI	GGNCC	8 cut(s)	191, 311, 440, 578, 620, 621, 1184, 1522
PspPPI	RGGWCCY	2 cut(s)	1184, 1522
PsuI	RGATCY	2 cut(s)	1650, 1735
PvuI	CGATCG	1 cut(s)	296
RsaI	GTAC	4 cut(s)	471, 629, 1372, 1386
RsaNI	GTAC	4 cut(s)	470, 628, 1371, 1385
RseI	CAYNNNNRTG	4 cut(s)	132, 273, 1403, 1464
SacI	GAGCTC	1 cut(s)	723
SapI	GCTCTTC	2 cut(s)	728, 1007
SaqAI	TTAA	6 cut(s)	231, 240, 1316, 1326, 1473, 1750
SatI	GCNGC	4 cut(s)	705, 933, 1159, 1206
Sau3AI	GATC	9 cut(s)	217, 293, 425, 447, 507, 771, 1546, 1650, 1735
Sau96I	GGNCC	8 cut(s)	191, 311, 440, 578, 620, 621, 1184, 1522
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	7 cut(s)	189, 618, 815, 816, 1181, 1270, 1620
SduI	GDGCHC	3 cut(s)	624, 723, 1578
SfaNI	GCATC	1 cut(s)	757
SinI	GGWCC	4 cut(s)	311, 440, 1184, 1522
SmaI	CCCGGG	1 cut(s)	816
SmiMI	CAYNNNNRTG	4 cut(s)	132, 273, 1403, 1464
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SpeI	ACTAGT	2 cut(s)	1400, 1658
SphI	GCATGC	1 cut(s)	407
SseBI	AGGCCT	1 cut(s)	1140
SsiI	CCGC	6 cut(s)	465, 691, 882, 998, 1205, 1245
SspMI	CTAG	7 cut(s)	207, 885, 905, 1401, 1659, 1685, 1691
SstI	GAGCTC	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	1140
StyD4I	CCNGG	7 cut(s)	187, 616, 813, 814, 1179, 1268, 1618
StyI	CCWWGG	1 cut(s)	1141
TaaI	ACNGT	5 cut(s)	172, 433, 928, 1166, 1567
TaiI	ACGT	3 cut(s)	65, 225, 1224
TaqI	TCGA	6 cut(s)	196, 283, 292, 1443, 1545, 1554
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	1208
TfiI	GAWTC	3 cut(s)	950, 1417, 1602
Tru1I	TTAA	6 cut(s)	231, 240, 1316, 1326, 1473, 1750
Tru9I	TTAA	6 cut(s)	231, 240, 1316, 1326, 1473, 1750
TscAI	CASTG	3 cut(s)	275, 544, 931
TseFI	GTSAC	2 cut(s)	21, 136
TseI	GCWGC	3 cut(s)	704, 932, 1158
Tsp45I	GTSAC	2 cut(s)	21, 136
TspDTI	ATGAA	6 cut(s)	865, 963, 1001, 1448, 1454, 1621
TspGWI	ACGGA	1 cut(s)	1055
TspMI	CCCGGG	1 cut(s)	814
TspRI	CASTG	3 cut(s)	275, 544, 931
Van91I	CCANNNNNTGG	1 cut(s)	270
VpaK11BI	GGWCC	4 cut(s)	311, 440, 1184, 1522
XapI	RAATTY	2 cut(s)	113, 853
XceI	RCATGY	3 cut(s)	86, 407, 1749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1187
XmaI	CCCGGG	1 cut(s)	814
XmiI	GTMKAC	2 cut(s)	360, 534
XspI	CTAG	7 cut(s)	207, 885, 905, 1401, 1659, 1685, 1691
Zsp2I	ATGCAT	1 cut(s)	1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.