Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000610

Physical Location & Seq

Genomic Coordinates Reverse (-)

31689265 .. 31689657

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0180900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCACCCTCCTCTGGAGAATATTCGGCAAAGTTAAACTTTGATGGTTCGGTCTCTCTTTTAGGTTTGGCAGCAGCGGGGTTTGTAATCAGAAATCATCTTGGTGACCCTATTGCTGCTGGCTCTCGGTCCATTGGTTCCTCATCTGTTCCTGTTGCGGAGTGCTCTGCGCTCAAGGATGGTTTATTAACCGCCCGACGGTTTAATTTTGATCATGTCTTGGTGGAAGGAGATTCTTCTCTTGTCATCAATTGTATGAATCTCAAGTGTGAAGCTCCCTGGATTTTGAAGTCTCTCTTGAAGGAAATTGCTTCTCTTCACGTCCATTTCCTTCTCTCATGTGTTCCGAGAAGCGAATTTTCTGACGGAGGCTGTTACTGCCACTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0010023 GO:0010035 GO:0010038 GO:0016491 GO:0016722 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044550 GO:0046189 GO:0046483 GO:0046688 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

130

Amino Acids

13.82

Weight (kDa)

6.16

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	13 - 110	2.5e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60020 AT5G60020 AT5G60020
fragaria_vesca	FvH4_2g09062 FvH4_2g09062 FvH4_3g05920 FvH4_3g34100 FvH4_3g34310 FvH4_3g34340 FvH4_6g13390
malus_domestica	MD00G1015000.v1.1 MD03G1106500.v1.1 MD03G1106600.v1.1 MD04G1131500.v1.1 MD11G1118900.v1.1 MD11G1119000.v1.1 MD12G1144600.v1.1
prunus_persica	Prupe.6G089100_v2.0.a1 Prupe.6G089300_v2.0.a1 Prupe.6G258000_v2.0.a1
pyrus_communis	pycom03g08590 pycom10g02940 pycom11g09990 pycom11g10060
rosa_chinensis	RchiOBHm_Chr2g0154491 RchiOBHm_Chr3g0466271 RchiOBHm_Chr5g0061891 RchiOBHm_Chr5g0061911 RchiOBHm_Chr5g0061951 RchiOBHm_Chr5g0061961 RchiOBHm_Chr6g0264371
rosa_laevigata	RLG00000024591 RLG00000035514 RLG00000035516 RLG00000035518 RLG00000035519
rosa_multiflora	Rmu_sc0003480.1_g000021 Rmu_sc0011641.1_g000002 Rmu_sc0011641.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018790 Rroxscaffold_1G00018820 Rroxscaffold_1G00018850 Rroxscaffold_2G00122520 Rroxscaffold_2G00122540 Rroxscaffold_6G00414660
rosa_rugosa	Rorug03G0080700 Rorug04G0180900 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345000 Rorug05G0345100 Rorug05G0345200 Rorug06G0011800
rosa_samantha	Rh3DG148900 Rh5AG405700 Rh5AG406100 Rh5AG406200 Rh5BG419200 Rh5BG419400 Rh5CG443100 Rh5CG443300 Rh5CG443500 Rh5CG443600 Rh5DG432700 Rh5DG434900 Rh6BG128700 Rh6CG127600 Rh6DG114200 Rh6DG114300
rosa_wichuraiana	Rw3G011980 Rw5G038100 Rw5G038140 Rw5G038160 Rw5G038200 Rw5G038210 Rw5G038250 Rw5G038270 Rw5G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	77, 158, 192
AcsI	RAATTY	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	14, 198
AgsI	TTSAA	2 cut(s)	289, 301
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	58, 297
ApeKI	GCWGC	3 cut(s)	71, 74, 116
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	83, 86, 103
BccI	CCATC	2 cut(s)	38, 173
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	58, 297
BisI	GCNGC	3 cut(s)	72, 75, 117
BlsI	GCNGC	3 cut(s)	73, 76, 118
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	6, 139
BmrFI	CCNGG	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	158, 248
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 198
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	14, 198
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	83, 86, 103
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	14, 198
BsmAI	GTCTC	2 cut(s)	58, 297
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	3 cut(s)	77, 158, 192
BspLI	GGNNCC	2 cut(s)	6, 139
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	121
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	58, 297
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	83, 86, 103
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	2 cut(s)	215, 339
CviJI	RGCY	3 cut(s)	123, 275, 372
CviKI_1	RGCY	3 cut(s)	123, 275, 372
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	129
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	278
FaeI	CATG	2 cut(s)	218, 342
FaiI	YATR	4 cut(s)	216, 257, 340, 391
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 281, 313
FatI	CATG	2 cut(s)	214, 338
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	72, 75, 117
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	72, 75, 117
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	72, 75, 117
GsuI	CTGGAG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	218, 342
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	233, 259
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	92, 348, 364
Hpy188III	TCNNGA	2 cut(s)	15, 298
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	221, 295, 341
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	218, 342
HspAI	GCGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	105, 165, 265, 292, 370
Lsp1109I	GCAGC	3 cut(s)	83, 86, 103
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	104, 374
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	228, 308
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	4 cut(s)	205, 250, 306, 356
MnlI	CCTC	4 cut(s)	19, 22, 151, 362
MseI	TTAA	3 cut(s)	35, 188, 204
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	218, 342
NlaIV	GGNNCC	2 cut(s)	6, 139
NmuCI	GTSAC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	233, 259
PkrI	GCNGC	3 cut(s)	73, 76, 118
Psp6I	CCWGG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	6, 139
PspPI	GGNCC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	35, 188, 204
SatI	GCNGC	3 cut(s)	72, 75, 117
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	3 cut(s)	67, 277, 324
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	173, 263
SmoI	CTYRAG	2 cut(s)	173, 263
Sse9I	AATT	4 cut(s)	205, 250, 306, 356
SsiI	CCGC	3 cut(s)	77, 158, 192
SspI	AATATT	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	324
TaqII	GACCGA	2 cut(s)	40, 117
TasI	AATT	4 cut(s)	205, 250, 306, 356
TfiI	GAWTC	2 cut(s)	233, 259
Tru1I	TTAA	3 cut(s)	35, 188, 204
Tru9I	TTAA	3 cut(s)	35, 188, 204
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	71, 74, 116
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.