Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu-oxidase_2 | PF07731 | 1 - 81 | 2.1e-33 | Multicopper oxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 86 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AgsI | TTSAA | 3 cut(s) | 76, 104, 151 |
| AjnI | CCWGG | 1 cut(s) | 163 |
| AluBI | AGCT | 1 cut(s) | 257 |
| AluI | AGCT | 1 cut(s) | 257 |
| AlwI | GGATC | 1 cut(s) | 86 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BccI | CCATC | 2 cut(s) | 149, 195 |
| BciT130I | CCWGG | 1 cut(s) | 165 |
| BciVI | GTATCC | 1 cut(s) | 211 |
| BfaI | CTAG | 1 cut(s) | 191 |
| BfuI | GTATCC | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 1 cut(s) | 165 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 69, 249 |
| BmrFI | CCNGG | 1 cut(s) | 165 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 2 cut(s) | 111, 181 |
| BseBI | CCWGG | 1 cut(s) | 165 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseMI | GCAATG | 2 cut(s) | 111, 181 |
| BseRI | GAGGAG | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 104 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmFI | GGGAC | 1 cut(s) | 104 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspLI | GGNNCC | 2 cut(s) | 69, 249 |
| BspPI | GGATC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 2 cut(s) | 111, 181 |
| BssMI | GATC | 1 cut(s) | 91 |
| Bst2UI | CCWGG | 1 cut(s) | 165 |
| Bst4CI | ACNGT | 1 cut(s) | 20 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstNI | CCWGG | 1 cut(s) | 165 |
| BstSCI | CCNGG | 1 cut(s) | 163 |
| BsuI | GTATCC | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CviAII | CATG | 3 cut(s) | 11, 207, 214 |
| CviJI | RGCY | 3 cut(s) | 43, 155, 257 |
| CviKI_1 | RGCY | 3 cut(s) | 43, 155, 257 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 163 |
| EcoT22I | ATGCAT | 1 cut(s) | 183 |
| FaeI | CATG | 3 cut(s) | 14, 210, 217 |
| FaiI | YATR | 9 cut(s) | 12, 27, 179, 201, 203, 208, 215, 230, 284 |
| FaqI | GGGAC | 1 cut(s) | 104 |
| FatI | CATG | 3 cut(s) | 10, 206, 213 |
| FauNDI | CATATG | 1 cut(s) | 201 |
| FspBI | CTAG | 1 cut(s) | 191 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| Hin1II | CATG | 3 cut(s) | 14, 210, 217 |
| HinfI | GANTC | 1 cut(s) | 147 |
| Hpy166II | GTNNAC | 1 cut(s) | 135 |
| Hpy188I | TCNGA | 1 cut(s) | 146 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 135 |
| HpyAV | CCTTC | 1 cut(s) | 17 |
| HpyCH4III | ACNGT | 1 cut(s) | 20 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 181 |
| Hsp92II | CATG | 3 cut(s) | 14, 210, 217 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LpnPI | CCDG | 5 cut(s) | 135, 150, 177, 264, 291 |
| MaeI | CTAG | 1 cut(s) | 191 |
| MaeIII | GTNAC | 1 cut(s) | 14 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MmeI | TCCRAC | 1 cut(s) | 13 |
| MnlI | CCTC | 3 cut(s) | 105, 108, 279 |
| Mph1103I | ATGCAT | 1 cut(s) | 183 |
| MslI | CAYNNNNRTG | 1 cut(s) | 9 |
| MspR9I | CCNGG | 1 cut(s) | 165 |
| MvaI | CCWGG | 1 cut(s) | 165 |
| NdeI | CATATG | 1 cut(s) | 201 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 3 cut(s) | 14, 210, 217 |
| NlaIV | GGNNCC | 2 cut(s) | 69, 249 |
| NsiI | ATGCAT | 1 cut(s) | 183 |
| PfeI | GAWTC | 1 cut(s) | 147 |
| PfoI | TCCNGGA | 1 cut(s) | 163 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 163 |
| PspGI | CCWGG | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 2 cut(s) | 69, 249 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 1 cut(s) | 9 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| ScrFI | CCNGG | 1 cut(s) | 165 |
| SetI | ASST | 5 cut(s) | 9, 253, 259, 271, 292 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 9 |
| SspMI | CTAG | 1 cut(s) | 191 |
| StyD4I | CCNGG | 1 cut(s) | 163 |
| TaaI | ACNGT | 1 cut(s) | 20 |
| TfiI | GAWTC | 1 cut(s) | 147 |
| TspDTI | ATGAA | 1 cut(s) | 217 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XbaI | TCTAGA | 1 cut(s) | 190 |
| XspI | CTAG | 1 cut(s) | 191 |
| Zsp2I | ATGCAT | 1 cut(s) | 183 |