Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu-oxidase_2 | PF07731 | 144 - 274 | 5.1e-42 | Multicopper oxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 32 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 714 |
| AciI | CCGC | 4 cut(s) | 6, 81, 184, 711 |
| AclI | AACGTT | 1 cut(s) | 348 |
| AclWI | GGATC | 2 cut(s) | 772, 870 |
| AcoI | YGGCCR | 1 cut(s) | 397 |
| AfaI | GTAC | 2 cut(s) | 71, 499 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 406, 710, 711, 714 |
| AflIII | ACRYGT | 1 cut(s) | 872 |
| AgsI | TTSAA | 5 cut(s) | 339, 601, 664, 683, 799 |
| AhlI | ACTAGT | 1 cut(s) | 527 |
| AjnI | CCWGG | 1 cut(s) | 745 |
| AluBI | AGCT | 6 cut(s) | 140, 189, 212, 472, 505, 789 |
| AluI | AGCT | 6 cut(s) | 140, 189, 212, 472, 505, 789 |
| AlwI | GGATC | 2 cut(s) | 772, 870 |
| AoxI | GGCC | 2 cut(s) | 11, 397 |
| ApeKI | GCWGC | 2 cut(s) | 186, 332 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 140, 172 |
| AspLEI | GCGC | 1 cut(s) | 514 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| BalI | TGGCCA | 1 cut(s) | 399 |
| BanI | GGYRCC | 1 cut(s) | 32 |
| BanII | GRGCYC | 1 cut(s) | 469 |
| BbvI | GCAGC | 2 cut(s) | 198, 319 |
| BccI | CCATC | 2 cut(s) | 796, 815 |
| BciT130I | CCWGG | 1 cut(s) | 747 |
| BcuI | ACTAGT | 1 cut(s) | 527 |
| BfaI | CTAG | 7 cut(s) | 29, 65, 528, 555, 734, 786, 818 |
| BfoI | RGCGCY | 1 cut(s) | 515 |
| BisI | GCNGC | 2 cut(s) | 187, 333 |
| BlsI | GCNGC | 2 cut(s) | 188, 334 |
| Bme1390I | CCNGG | 1 cut(s) | 747 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmiI | GGNNCC | 4 cut(s) | 34, 265, 313, 466 |
| BmrFI | CCNGG | 1 cut(s) | 747 |
| BpmI | CTGGAG | 1 cut(s) | 691 |
| BsaAI | YACGTR | 1 cut(s) | 19 |
| BsaJI | CCNNGG | 2 cut(s) | 307, 745 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 102, 117, 132, 147, 527, 557 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 406, 710, 711, 714 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 1 cut(s) | 499 |
| BseBI | CCWGG | 1 cut(s) | 747 |
| BseDI | CCNNGG | 2 cut(s) | 307, 745 |
| BseGI | GGATG | 1 cut(s) | 577 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 406, 710, 711, 714 |
| BseMI | GCAATG | 1 cut(s) | 499 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseXI | GCAGC | 2 cut(s) | 198, 319 |
| BseYI | CCCAGC | 4 cut(s) | 136, 208, 468, 789 |
| BshFI | GGCC | 2 cut(s) | 13, 399 |
| BshNI | GGYRCC | 1 cut(s) | 32 |
| BslFI | GGGAC | 1 cut(s) | 203 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 406, 710, 711, 714 |
| BsmFI | GGGAC | 1 cut(s) | 203 |
| BsmI | GAATGC | 2 cut(s) | 60, 558 |
| BsnI | GGCC | 2 cut(s) | 13, 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 469 |
| Bsp143I | GATC | 3 cut(s) | 432, 777, 862 |
| BspACI | CCGC | 4 cut(s) | 6, 81, 184, 711 |
| BspANI | GGCC | 2 cut(s) | 13, 399 |
| BspLI | GGNNCC | 4 cut(s) | 34, 265, 313, 466 |
| BspPI | GGATC | 2 cut(s) | 772, 870 |
| BspT107I | GGYRCC | 1 cut(s) | 32 |
| BsrDI | GCAATG | 1 cut(s) | 499 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 307, 745 |
| BssMI | GATC | 3 cut(s) | 432, 777, 862 |
| BssT1I | CCWWGG | 1 cut(s) | 307 |
| Bst2UI | CCWGG | 1 cut(s) | 747 |
| Bst4CI | ACNGT | 3 cut(s) | 204, 694, 858 |
| Bst6I | CTCTTC | 1 cut(s) | 588 |
| BstBAI | YACGTR | 1 cut(s) | 19 |
| BstC8I | GCNNGC | 3 cut(s) | 58, 175, 281 |
| BstDEI | CTNAG | 1 cut(s) | 654 |
| BstF5I | GGATG | 1 cut(s) | 577 |
| BstH2I | RGCGCY | 1 cut(s) | 515 |
| BstHHI | GCGC | 1 cut(s) | 514 |
| BstKTI | GATC | 3 cut(s) | 435, 780, 865 |
| BstMBI | GATC | 3 cut(s) | 432, 777, 862 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 183, 276, 511 |
| BstNI | CCWGG | 1 cut(s) | 747 |
| BstNSI | RCATGY | 1 cut(s) | 876 |
| BstSCI | CCNGG | 1 cut(s) | 745 |
| BstV1I | GCAGC | 2 cut(s) | 198, 319 |
| BstX2I | RGATCY | 2 cut(s) | 777, 862 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 395 |
| BstYI | RGATCY | 2 cut(s) | 777, 862 |
| BsuRI | GGCC | 2 cut(s) | 13, 399 |
| BtsCI | GGATG | 1 cut(s) | 577 |
| BtsI | GCAGTG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 2 cut(s) | 101, 369 |
| Cac8I | GCNNGC | 3 cut(s) | 58, 175, 281 |
| CfoI | GCGC | 1 cut(s) | 514 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| Csp6I | GTAC | 2 cut(s) | 70, 498 |
| CviAII | CATG | 5 cut(s) | 273, 593, 760, 807, 873 |
| CviQI | GTAC | 2 cut(s) | 70, 498 |
| DdeI | CTNAG | 1 cut(s) | 654 |
| DpnI | GATC | 3 cut(s) | 434, 779, 864 |
| DpnII | GATC | 3 cut(s) | 432, 777, 862 |
| EaeI | YGGCCR | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 1 cut(s) | 588 |
| EarI | CTCTTC | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 1 cut(s) | 307 |
| Eco24I | GRGCYC | 1 cut(s) | 469 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| EcoO109I | RGGNCCY | 1 cut(s) | 311 |
| EcoRII | CCWGG | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 1 cut(s) | 765 |
| EcoT38I | GRGCYC | 1 cut(s) | 469 |
| ErhI | CCWWGG | 1 cut(s) | 307 |
| FaeI | CATG | 5 cut(s) | 276, 596, 763, 810, 876 |
| FaqI | GGGAC | 1 cut(s) | 203 |
| FatI | CATG | 5 cut(s) | 272, 592, 759, 806, 872 |
| FauI | CCCGC | 1 cut(s) | 704 |
| Fnu4HI | GCNGC | 2 cut(s) | 187, 333 |
| FokI | GGATG | 1 cut(s) | 564 |
| FriOI | GRGCYC | 1 cut(s) | 469 |
| Fsp4HI | GCNGC | 2 cut(s) | 187, 333 |
| FspBI | CTAG | 7 cut(s) | 29, 65, 528, 555, 734, 786, 818 |
| GlaI | GCGC | 1 cut(s) | 513 |
| GluI | GCNGC | 2 cut(s) | 187, 333 |
| GsaI | CCCAGC | 4 cut(s) | 140, 212, 472, 793 |
| GsuI | CTGGAG | 1 cut(s) | 691 |
| HaeII | RGCGCY | 1 cut(s) | 515 |
| HaeIII | GGCC | 2 cut(s) | 13, 399 |
| HhaI | GCGC | 1 cut(s) | 514 |
| Hin1II | CATG | 5 cut(s) | 276, 596, 763, 810, 876 |
| Hin6I | GCGC | 1 cut(s) | 512 |
| HinP1I | GCGC | 1 cut(s) | 512 |
| HincII | GTYRAC | 2 cut(s) | 232, 673 |
| HindII | GTYRAC | 2 cut(s) | 232, 673 |
| Hpy166II | GTNNAC | 2 cut(s) | 232, 673 |
| Hpy188I | TCNGA | 2 cut(s) | 432, 862 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 2 cut(s) | 232, 673 |
| Hpy99I | CGWCG | 1 cut(s) | 862 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4III | ACNGT | 3 cut(s) | 204, 694, 858 |
| HpyCH4IV | ACGT | 3 cut(s) | 18, 216, 348 |
| HpyCH4V | TGCA | 4 cut(s) | 161, 547, 722, 763 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 183, 276, 511 |
| HpyF3I | CTNAG | 1 cut(s) | 654 |
| HpySE526I | ACGT | 3 cut(s) | 18, 216, 348 |
| Hsp92II | CATG | 5 cut(s) | 276, 596, 763, 810, 876 |
| HspAI | GCGC | 1 cut(s) | 512 |
| Kzo9I | GATC | 3 cut(s) | 432, 777, 862 |
| LmnI | GCTCC | 1 cut(s) | 464 |
| Lsp1109I | GCAGC | 2 cut(s) | 198, 319 |
| MaeI | CTAG | 7 cut(s) | 29, 65, 528, 555, 734, 786, 818 |
| MaeII | ACGT | 3 cut(s) | 18, 216, 348 |
| MaeIII | GTNAC | 2 cut(s) | 19, 767 |
| MalI | GATC | 3 cut(s) | 434, 779, 864 |
| MboI | GATC | 3 cut(s) | 432, 777, 862 |
| MboII | GAAGA | 5 cut(s) | 238, 575, 581, 811, 857 |
| MflI | RGATCY | 2 cut(s) | 777, 862 |
| MhlI | GDGCHC | 1 cut(s) | 469 |
| MlsI | TGGCCA | 1 cut(s) | 399 |
| MluCI | AATT | 3 cut(s) | 454, 601, 723 |
| MluNI | TGGCCA | 1 cut(s) | 399 |
| MmeI | TCCRAC | 1 cut(s) | 840 |
| MnlI | CCTC | 4 cut(s) | 107, 591, 715, 861 |
| Mox20I | TGGCCA | 1 cut(s) | 399 |
| Mph1103I | ATGCAT | 1 cut(s) | 765 |
| MscI | TGGCCA | 1 cut(s) | 399 |
| MseI | TTAA | 4 cut(s) | 191, 443, 453, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 591 |
| Msp20I | TGGCCA | 1 cut(s) | 399 |
| MspA1I | CMGCKG | 2 cut(s) | 472, 711 |
| MspR9I | CCNGG | 1 cut(s) | 747 |
| Mva1269I | GAATGC | 2 cut(s) | 60, 558 |
| MvaI | CCWGG | 1 cut(s) | 747 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 183, 276, 511 |
| NdeII | GATC | 3 cut(s) | 432, 777, 862 |
| NlaIII | CATG | 5 cut(s) | 276, 596, 763, 810, 876 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 265, 313, 466 |
| NmuCI | GTSAC | 2 cut(s) | 19, 767 |
| NsiI | ATGCAT | 1 cut(s) | 765 |
| NspI | RCATGY | 1 cut(s) | 876 |
| PciI | ACATGT | 1 cut(s) | 872 |
| PctI | GAATGC | 2 cut(s) | 60, 558 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 714 |
| PkrI | GCNGC | 2 cut(s) | 188, 334 |
| Ppu21I | YACGTR | 1 cut(s) | 19 |
| PpuMI | RGGWCCY | 1 cut(s) | 311 |
| PscI | ACATGT | 1 cut(s) | 872 |
| Psp1406I | AACGTT | 1 cut(s) | 348 |
| Psp5II | RGGWCCY | 1 cut(s) | 311 |
| Psp6I | CCWGG | 1 cut(s) | 745 |
| PspFI | CCCAGC | 4 cut(s) | 136, 208, 468, 789 |
| PspGI | CCWGG | 1 cut(s) | 745 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 265, 313, 466 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| PspPPI | RGGWCCY | 1 cut(s) | 311 |
| PsuI | RGATCY | 2 cut(s) | 777, 862 |
| PvuII | CAGCTG | 1 cut(s) | 472 |
| RsaI | GTAC | 2 cut(s) | 71, 499 |
| RsaNI | GTAC | 2 cut(s) | 70, 498 |
| RseI | CAYNNNNRTG | 1 cut(s) | 591 |
| SaqAI | TTAA | 4 cut(s) | 191, 443, 453, 522 |
| SatI | GCNGC | 2 cut(s) | 187, 333 |
| Sau3AI | GATC | 3 cut(s) | 432, 777, 862 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 1 cut(s) | 747 |
| SduI | GDGCHC | 1 cut(s) | 469 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 591 |
| SpeI | ACTAGT | 1 cut(s) | 527 |
| Sse9I | AATT | 3 cut(s) | 454, 601, 723 |
| SsiI | CCGC | 4 cut(s) | 6, 81, 184, 711 |
| SspMI | CTAG | 7 cut(s) | 29, 65, 528, 555, 734, 786, 818 |
| StyD4I | CCNGG | 1 cut(s) | 745 |
| StyI | CCWWGG | 1 cut(s) | 307 |
| TaaI | ACNGT | 3 cut(s) | 204, 694, 858 |
| TaiI | ACGT | 3 cut(s) | 21, 219, 351 |
| TaqI | TCGA | 2 cut(s) | 39, 636 |
| TasI | AATT | 3 cut(s) | 454, 601, 723 |
| Tru1I | TTAA | 4 cut(s) | 191, 443, 453, 522 |
| Tru9I | TTAA | 4 cut(s) | 191, 443, 453, 522 |
| TscAI | CASTG | 2 cut(s) | 108, 376 |
| TseFI | GTSAC | 2 cut(s) | 19, 767 |
| TseI | GCWGC | 2 cut(s) | 186, 332 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 767 |
| TspDTI | ATGAA | 3 cut(s) | 575, 581, 748 |
| TspGWI | ACGGA | 1 cut(s) | 507 |
| TspRI | CASTG | 2 cut(s) | 108, 376 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 714 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| XbaI | TCTAGA | 1 cut(s) | 64 |
| XceI | RCATGY | 1 cut(s) | 876 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 314 |
| XspI | CTAG | 7 cut(s) | 29, 65, 528, 555, 734, 786, 818 |
| Zsp2I | ATGCAT | 1 cut(s) | 765 |