Rroxscaffold_1G00018780

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017274
Physical Location & Seq
Reverse (-)
22907240 .. 22908496
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018780.1

Sequence Viewer

Length: 585 bp
ATGGCAACAAAGGATTATGGAGGATCGTTATTAACATGCTGTGTGCTTTTTCTTGCTTTGTTTGCCGGAGGTGAAAGTTTCGCGCCAACGAACAAGGGAAACTGTACATACGCAGTTACAATTGAAACAACATGCACAAAAGGTGCTTCAACCTCAAACAACATTAGCCTAAGATTTGGCGACACAAATTCTAATGACGTTTTGGTAAAGCACCTAAACTCCAAGCACATAAGAAGGGTGGATCCACTAGAACCCCAAGTCCTTGACGATGTGCCTAGAAAACCATTTCAAGCTTGTGTTGTGGATCAGTTTCAAGTGAAGGGTCTATGCGTTGACTCACCCATCTGCTACTTGTATCTCAAACTGGCTGGAACTGATGACTGGCGGCCCGGTTTTGCTCAAGTCCATGTCATGGAGGGATCTCACTCTCATCTTAGCTCCGATTACTTCTACTTCCGCCGGTACCTGCCTCGCCGTGCTTGGCATGGTTTGGATGCGTGCGATAAAGAGGTCACTCCCTTTGGGATTAAGCAAAATAGGAAAGTCTTTATAAAGAAACAAGGGAAACATATGTCCTTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

194

Amino Acids

21.74

Weight (kDa)

8.89

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 26 - 167 9e-40 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34350
prunus_persica Prupe.6G089000_v2.0.a1
pyrus_communis pycom03g08580
rosa_laevigata RLG00000035520
rosa_multiflora Rmu_sc0011641.1_g000001
rosa_roxburghii Rroxscaffold_1G00018780
rosa_rugosa Rorug05G0345200
rosa_samantha Rh5AG406300 Rh5BG419500 Rh5CG443700 Rh5DG435000
rosa_wichuraiana Rw5G038220 Rw5G038300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 474
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 412
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 385, 457
AclWI GGATC 5 cut(s) 31, 236, 249, 312, 427
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 2 cut(s) 106, 464
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 4 cut(s) 125, 150, 290, 314
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 293, 438
AluI AGCT 2 cut(s) 293, 438
AlwI GGATC 5 cut(s) 31, 236, 249, 312, 427
AoxI GGCC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 187
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 387
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 83, 330
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 462
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 459
BcnI CCSGG 1 cut(s) 390
BfaI CTAG 2 cut(s) 248, 276
BfuAI ACCTGC 1 cut(s) 474
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 2 cut(s) 243, 464
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 2 cut(s) 369, 386
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 369, 386
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 3 cut(s) 66, 390, 460
BslI CCNNNNNNNGG 1 cut(s) 412
BsnI GGCC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 4 cut(s) 23, 241, 304, 419
BspACI CCGC 2 cut(s) 385, 457
BspANI GGCC 1 cut(s) 388
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 243, 464
BspMI ACCTGC 1 cut(s) 474
BspPI GGATC 5 cut(s) 31, 236, 249, 312, 427
BspT107I GGYRCC 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 2 cut(s) 369, 386
BssAI RCCGGY 1 cut(s) 459
BssMI GATC 4 cut(s) 23, 241, 304, 419
Bst4CI ACNGT 1 cut(s) 104
BstAUI TGTACA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 2 cut(s) 170, 434
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 4 cut(s) 26, 244, 307, 422
BstMBI GATC 4 cut(s) 23, 241, 304, 419
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 2 cut(s) 39, 135
BstSCI CCNGG 1 cut(s) 388
BstUI CGCG 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 241, 419
BstYI RGATCY 2 cut(s) 241, 419
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 1 cut(s) 499
BveI ACCTGC 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 499
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 105, 463
CviAII CATG 6 cut(s) 36, 132, 407, 412, 485, 582
CviJI RGCY 5 cut(s) 168, 293, 368, 388, 438
CviKI_1 RGCY 5 cut(s) 168, 293, 368, 388, 438
CviQI GTAC 2 cut(s) 105, 463
DdeI CTNAG 2 cut(s) 170, 434
DpnI GATC 4 cut(s) 25, 243, 306, 421
DpnII GATC 4 cut(s) 23, 241, 304, 419
EciI GGCGGA 1 cut(s) 446
FaeI CATG 6 cut(s) 39, 135, 410, 415, 488, 585
FatI CATG 6 cut(s) 35, 131, 406, 411, 484, 581
FauNDI CATATG 1 cut(s) 570
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 248, 276
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 388
HapII CCGG 3 cut(s) 66, 390, 460
HhaI GCGC 1 cut(s) 85
Hin1II CATG 6 cut(s) 39, 135, 410, 415, 488, 585
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 1 cut(s) 335
HpaII CCGG 3 cut(s) 66, 390, 460
HphI GGTGA 2 cut(s) 83, 330
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 442
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 228, 313
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 170, 434
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 6 cut(s) 39, 135, 410, 415, 488, 585
HspAI GCGC 1 cut(s) 83
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 4 cut(s) 23, 241, 304, 419
LmnI GCTCC 1 cut(s) 443
LpnPI CCDG 7 cut(s) 79, 350, 354, 367, 403, 473, 479
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 248, 276
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 115, 511
MalI GATC 4 cut(s) 25, 243, 306, 421
MboI GATC 4 cut(s) 23, 241, 304, 419
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 2 cut(s) 241, 419
MluCI AATT 2 cut(s) 120, 187
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 6 cut(s) 14, 62, 163, 409, 480, 502
MseI TTAA 2 cut(s) 32, 528
MspI CCGG 3 cut(s) 66, 390, 460
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 120
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 570
NdeII GATC 4 cut(s) 23, 241, 304, 419
NlaIII CATG 6 cut(s) 39, 135, 410, 415, 488, 585
NlaIV GGNNCC 2 cut(s) 243, 464
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 2 cut(s) 39, 135
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PsiI TTATAA 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 243, 464
PspPI GGNCC 1 cut(s) 387
PsuI RGATCY 2 cut(s) 241, 419
RsaI GTAC 2 cut(s) 106, 464
RsaNI GTAC 2 cut(s) 105, 463
SaqAI TTAA 2 cut(s) 32, 528
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 4 cut(s) 23, 241, 304, 419
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 390
SetI ASST 9 cut(s) 73, 145, 155, 201, 216, 295, 440, 468, 513
SfaNI GCATC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 2 cut(s) 120, 187
SsiI CCGC 2 cut(s) 385, 457
SspMI CTAG 2 cut(s) 248, 276
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 201
TasI AATT 2 cut(s) 120, 187
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 32, 528
Tru9I TTAA 2 cut(s) 32, 528
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 412
XapI RAATTY 1 cut(s) 187
XceI RCATGY 2 cut(s) 39, 135
XspI CTAG 2 cut(s) 248, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.