Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016807

Physical Location & Seq

Genomic Coordinates Reverse (-)

31260676 .. 31267304

Gene Structure 6629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTTCGATGGGTTCCGAAAAGAAGGAGAAGAAGATGAAGAAGGCGAAGAAGGAAAACATAGAAGCTCCGGATCCGATGAGAATCGACAAGAAGAGCAAGAAAGAGTCAAACAAGCGAAAGGCTTTGGATACAGACGTGGTTGCCAAACCCAATAGCGAGCTGGAGGTACAGAAGCTTAAGAAGAAATCAAAGAAAGACAAGGCGGAGGAGACCCCTAATGCAGTGTCGAAGTTTCGAATTTCAGAGCCATTGAGGGCTAAGTTGAAGGAGAGAGGGATCAAGTCCTTGTCTCCAATCCAGGCCAGGACCTTTGATACCATCTTGGATGGGTTCGACTTGCTGGCACAGGCTCCTGCTGACCAGGACAAAACTCTGGCATTTGTGCTACCCATCCTGGAGTCTCTAGTAAATGGCTCTGCAGAACAATCTAAAAAGACTGGGCACAAGGCTCCATGTGTTATGGTACTTTTACCTACAAGGGACTCAGCCGTACAGGTTCTTAAGGAATTTGGATTTTATGGTGGTTCTTTGGGACTAGTATCATGTTGTGTGTATGGAGGATCCTCCCACAAGGTTCAAACAAAGAAGTTAAAGAGAGGCAGGATTGATATCATTGTTGGAACACCTGGCCGTGTAAAGGATCATATAGAGAAGGGCAACATAGACTTGAGCAGTTTGAAGTTTCGGGTCCTTGGTGACGCTGATGAACTGTGGAAGAAAGGGTTAGTTGAAGATGTTGAATTCATTCTAGGCAAGGTTAATGATGTAACTAAATTTCAAACACTTCTCTTCAGTACCCACATGCCCCGTTACGTGGAAAAGATTGCTTGCTCAAGGTATCTTAAATCAAACTATAAAGAGGTTGAACTGGTTAGTAATGAAAATAGGAAGGCCAGTCCATCCGAGGGTGGTCTTACTGATGAAAGAAATGGTAGATTTTCCAATCAAGAAGGGGCAGGTCGCGGCAACTATGGCAACAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

330

Amino Acids

36.64

Weight (kDa)

9.62

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	98 - 275	1e-28	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36510 FvH4_3g36510
pyrus_communis	pycom01g19970
rosa_chinensis	RchiOBHm_Chr5g0065371 RchiOBHm_Chr5g0065431
rosa_laevigata	RLG00000035787
rosa_multiflora	Rmu_co8502081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015820
rosa_rugosa	Rorug05G0371800
rosa_samantha	Rh5AG429500 Rh5BG444800 Rh5CG467100 Rh5DG457300
rosa_wichuraiana	Rw5G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	950
AccII	CGCG	1 cut(s)	966
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	2 cut(s)	206, 966
AclWI	GGATC	6 cut(s)	68, 81, 287, 558, 571, 651
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	4 cut(s)	240, 509, 743, 776
AcuI	CTGAAG	1 cut(s)	778
AfaI	GTAC	4 cut(s)	171, 468, 495, 799
AfiI	CCNNNNNNNGG	4 cut(s)	11, 640, 817, 908
AflII	CTTAAG	2 cut(s)	179, 503
AgsI	TTSAA	7 cut(s)	268, 581, 682, 734, 743, 782, 869
AhlI	ACTAGT	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	5 cut(s)	300, 305, 363, 396, 628
AluBI	AGCT	3 cut(s)	68, 163, 178
AluI	AGCT	3 cut(s)	68, 163, 178
Alw26I	GTCTC	3 cut(s)	206, 297, 408
AlwI	GGATC	6 cut(s)	68, 81, 287, 558, 571, 651
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	3 cut(s)	303, 631, 894
ApoI	RAATTY	4 cut(s)	240, 509, 743, 776
Asp700I	GAANNNNTTC	1 cut(s)	747
AspS9I	GGNCC	2 cut(s)	309, 691
AsuHPI	GGTGA	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	309, 691
BaeGI	GKGCMC	1 cut(s)	447
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BamHI	GGATCC	2 cut(s)	73, 563
BccI	CCATC	5 cut(s)	4, 323, 329, 401, 910
BceAI	ACGGC	2 cut(s)	476, 618
BciT130I	CCWGG	5 cut(s)	302, 307, 365, 398, 630
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	3 cut(s)	206, 297, 408
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	3 cut(s)	407, 539, 752
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	2 cut(s)	179, 503
BfuAI	ACCTGC	1 cut(s)	950
BfuI	GTATCC	1 cut(s)	124
BisI	GCNGC	1 cut(s)	967
BlsI	GCNGC	1 cut(s)	968
Bme1390I	CCNGG	5 cut(s)	302, 307, 365, 398, 630
Bme18I	GGWCC	2 cut(s)	309, 691
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	309, 691
BmiI	GGNNCC	6 cut(s)	16, 75, 354, 453, 565, 692
BmrFI	CCNGG	5 cut(s)	302, 307, 365, 398, 630
BmrI	ACTGGG	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	185, 419
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	2 cut(s)	691, 820
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	2 cut(s)	83, 611
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	694, 906
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 640, 817, 908
Bse1I	ACTGG	3 cut(s)	445, 876, 897
Bse8I	GATNNNNATC	2 cut(s)	83, 611
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	5 cut(s)	302, 307, 365, 398, 630
BseDI	CCNNGG	2 cut(s)	694, 906
BseGI	GGATG	3 cut(s)	334, 393, 902
BseJI	GATNNNNATC	2 cut(s)	83, 611
BseLI	CCNNNNNNNGG	4 cut(s)	11, 640, 817, 908
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	445, 876, 897
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	3 cut(s)	305, 633, 896
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	497, 549
BslI	CCNNNNNNNGG	4 cut(s)	11, 640, 817, 908
BsmAI	GTCTC	3 cut(s)	206, 297, 408
BsmFI	GGGAC	2 cut(s)	497, 549
BsnI	GGCC	3 cut(s)	305, 633, 896
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	73, 279, 563, 643
BspACI	CCGC	2 cut(s)	206, 966
BspANI	GGCC	3 cut(s)	305, 633, 896
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	966
BspLI	GGNNCC	6 cut(s)	16, 75, 354, 453, 565, 692
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	6 cut(s)	68, 81, 287, 558, 571, 651
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	238
BspTI	CTTAAG	2 cut(s)	179, 503
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	3 cut(s)	445, 876, 897
BssECI	CCNNGG	2 cut(s)	694, 906
BssMI	GATC	4 cut(s)	73, 279, 563, 643
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	5 cut(s)	302, 307, 365, 398, 630
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	89, 797
BstAFI	CTTAAG	2 cut(s)	179, 503
BstBAI	YACGTR	1 cut(s)	817
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	161, 345, 832
BstDEI	CTNAG	2 cut(s)	261, 487
BstF5I	GGATG	3 cut(s)	334, 393, 902
BstFNI	CGCG	1 cut(s)	966
BstKTI	GATC	4 cut(s)	76, 282, 566, 646
BstMAI	GTCTC	3 cut(s)	206, 297, 408
BstMBI	GATC	4 cut(s)	73, 279, 563, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	975
BstNI	CCWGG	5 cut(s)	302, 307, 365, 398, 630
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	5 cut(s)	300, 305, 363, 396, 628
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	73, 563
BstYI	RGATCY	2 cut(s)	73, 563
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	305, 633, 896
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	3 cut(s)	334, 393, 902
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	3 cut(s)	161, 345, 832
Cfr13I	GGNCC	2 cut(s)	309, 691
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	4 cut(s)	170, 467, 494, 798
CviAII	CATG	3 cut(s)	456, 546, 805
CviQI	GTAC	4 cut(s)	170, 467, 494, 798
DdeI	CTNAG	2 cut(s)	261, 487
DpnI	GATC	4 cut(s)	75, 281, 565, 645
DpnII	GATC	4 cut(s)	73, 279, 563, 643
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	89, 797
EarI	CTCTTC	2 cut(s)	89, 797
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	694
Eco31I	GGTCTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	2 cut(s)	309, 691
Eco57I	CTGAAG	1 cut(s)	778
EcoO109I	RGGNCCY	2 cut(s)	309, 691
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	5 cut(s)	300, 305, 363, 396, 628
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	459, 549, 808
FaqI	GGGAC	2 cut(s)	497, 549
FatI	CATG	3 cut(s)	455, 545, 804
Fnu4HI	GCNGC	1 cut(s)	967
FokI	GGATG	3 cut(s)	341, 380, 889
Fsp4HI	GCNGC	1 cut(s)	967
FspBI	CTAG	3 cut(s)	407, 539, 752
GluI	GCNGC	1 cut(s)	967
GsuI	CTGGAG	2 cut(s)	185, 419
HaeIII	GGCC	3 cut(s)	305, 633, 896
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	710
Hin1II	CATG	3 cut(s)	459, 549, 808
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	84, 107, 401, 485
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	710
Hpy188I	TCNGA	4 cut(s)	19, 78, 247, 907
Hpy188III	TCNNGA	2 cut(s)	71, 950
HpyAV	CCTTC	8 cut(s)	15, 19, 37, 46, 262, 649, 886, 947
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4IV	ACGT	2 cut(s)	138, 816
HpyCH4V	TGCA	2 cut(s)	224, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	975
HpyF3I	CTNAG	2 cut(s)	261, 487
HpySE526I	ACGT	2 cut(s)	138, 816
Hsp92II	CATG	3 cut(s)	459, 549, 808
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	73, 279, 563, 643
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	73, 358, 457
MaeI	CTAG	3 cut(s)	407, 539, 752
MaeII	ACGT	2 cut(s)	138, 816
MaeIII	GTNAC	3 cut(s)	698, 769, 812
MalI	GATC	4 cut(s)	75, 281, 565, 645
MboI	GATC	4 cut(s)	73, 279, 563, 643
MboII	GAAGA	9 cut(s)	43, 46, 52, 61, 106, 196, 730, 746, 784
MflI	RGATCY	2 cut(s)	73, 563
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	4 cut(s)	240, 509, 743, 776
MlyI	GAGTC	3 cut(s)	116, 410, 479
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	9 cut(s)	160, 202, 249, 269, 554, 577, 593, 856, 901
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	5 cut(s)	180, 504, 593, 762, 846
MspCI	CTTAAG	2 cut(s)	179, 503
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	5 cut(s)	302, 307, 365, 398, 630
MvaI	CCWGG	5 cut(s)	302, 307, 365, 398, 630
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	1 cut(s)	975
NdeII	GATC	4 cut(s)	73, 279, 563, 643
NlaIII	CATG	3 cut(s)	459, 549, 808
NlaIV	GGNNCC	6 cut(s)	16, 75, 354, 453, 565, 692
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	808
NspV	TTCGAA	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	747
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	968
PleI	GAGTC	3 cut(s)	115, 409, 479
PpsI	GAGTC	3 cut(s)	115, 409, 479
Ppu21I	YACGTR	1 cut(s)	817
PpuMI	RGGWCCY	2 cut(s)	309, 691
Psp5II	RGGWCCY	2 cut(s)	309, 691
Psp6I	CCWGG	5 cut(s)	300, 305, 363, 396, 628
PspGI	CCWGG	5 cut(s)	300, 305, 363, 396, 628
PspN4I	GGNNCC	6 cut(s)	16, 75, 354, 453, 565, 692
PspPI	GGNCC	2 cut(s)	309, 691
PspPPI	RGGWCCY	2 cut(s)	309, 691
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	73, 563
RsaI	GTAC	4 cut(s)	171, 468, 495, 799
RsaNI	GTAC	4 cut(s)	170, 467, 494, 798
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	5 cut(s)	180, 504, 593, 762, 846
SatI	GCNGC	1 cut(s)	967
Sau3AI	GATC	4 cut(s)	73, 279, 563, 643
Sau96I	GGNCC	2 cut(s)	309, 691
SchI	GAGTC	3 cut(s)	116, 410, 479
ScrFI	CCNGG	5 cut(s)	302, 307, 365, 398, 630
SduI	GDGCHC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	2 cut(s)	309, 691
SmlI	CTYRAG	4 cut(s)	179, 503, 670, 835
SmoI	CTYRAG	4 cut(s)	179, 503, 670, 835
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	4 cut(s)	240, 509, 743, 776
SsiI	CCGC	2 cut(s)	206, 966
SspMI	CTAG	3 cut(s)	407, 539, 752
StyD4I	CCNGG	5 cut(s)	300, 305, 363, 396, 628
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	714
TaiI	ACGT	2 cut(s)	141, 819
TaqI	TCGA	5 cut(s)	8, 87, 230, 238, 336
TasI	AATT	4 cut(s)	240, 509, 743, 776
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	5 cut(s)	180, 504, 593, 762, 846
Tru9I	TTAA	5 cut(s)	180, 504, 593, 762, 846
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	5 cut(s)	53, 723, 736, 897, 939
TspRI	CASTG	1 cut(s)	231
Vha464I	CTTAAG	2 cut(s)	179, 503
VpaK11BI	GGWCC	2 cut(s)	309, 691
XapI	RAATTY	4 cut(s)	240, 509, 743, 776
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	3 cut(s)	407, 539, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.