Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016807

Physical Location & Seq

Genomic Coordinates Reverse (-)

71270984 .. 71272637

Gene Structure 1654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACCAAAAAGAAATCAAAGAAGGCCAAGGTGGAGGAAGAGGAGAAGAAAAAGAATGTGGAGGAGGAGGAGAAACCTAATGCGGTGTCGCAGTTTCGGATTTCGCAGCCATTGATGGCTAAGTTGAAGGAGAGGGGGGTCGAGTCCTTGTCTCCAATTCAGGCCATGACCTTCGATACCATCTTGGATGGGTTCGACTTGATGGGTCAGGCTAGCGCTGGCCAGGATAAAACTCTGGCTTTTGTGTTACCCATCCTGGAGTCTCTAATAAATGGTTCTGCAGAACAATCTAAAAAGACCGGGTACAGGGCTCCAACTGTTATCGTACTTTTACCTACAAGGGACTTGGCCATACAGGTTCTTAAGGAATTTGGATTTTACGGCGGTTCTTTGGGAATAGTGTCATGTTGTGTACACGGAGGATCCTCCCACAAGGTTCAAACAAAGAAGTTAAAGAGAGGCCGGGTTGATATCATTGTTGGAACACCTGGCCGTGTAAAGGATCAAATAGAAAAGGGCAACATAGACTTGAGCAATTTGAAGTTTCGGGTCCTTGGTGAAGCTGATGAAATGTCAAAGAAGGGGTTAGTTGAACATGTTGAATTCATTCTAGGCAAGGAATATGATGTAGCTAAAGTTCAAACGCTTCTCTTCAGTACTACCATGCCCCATTGGGTGGAAGAGATTGCTCCCTCCAGGTATCTTAAATCAAATTATAAAAAGGTTGATTTGGTTGGTAATGAAAAAATGAAGACCAGTCAATCCGATGGTGGTTTCTCTGATAAAAGAAATTATAGGTTTTCCGGTCAAGGTGGGACAGGTCGCAGCAACTATGGCAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

282

Amino Acids

31.34

Weight (kDa)

9.43

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	51 - 229	2.4e-34	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36510 FvH4_3g36510
pyrus_communis	pycom01g19970
rosa_chinensis	RchiOBHm_Chr5g0065371 RchiOBHm_Chr5g0065431
rosa_laevigata	RLG00000035787
rosa_multiflora	Rmu_co8502081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015820
rosa_rugosa	Rorug05G0371800
rosa_samantha	Rh5AG429500 Rh5BG444800 Rh5CG467100 Rh5DG457300
rosa_wichuraiana	Rw5G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AccB7I	CCANNNNNTGG	1 cut(s)	676
AciI	CCGC	2 cut(s)	83, 384
AclWI	GGATC	3 cut(s)	417, 430, 510
AcoI	YGGCCR	3 cut(s)	220, 348, 490
AcsI	RAATTY	2 cut(s)	368, 602
AcuI	CTGAAG	1 cut(s)	637
AfaI	GTAC	4 cut(s)	305, 327, 414, 658
AfeI	AGCGCT	1 cut(s)	217
AfiI	CCNNNNNNNGG	3 cut(s)	306, 499, 676
AflII	CTTAAG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	6 cut(s)	127, 440, 541, 593, 602, 641
AjnI	CCWGG	4 cut(s)	222, 255, 487, 695
AluBI	AGCT	2 cut(s)	563, 632
AluI	AGCT	2 cut(s)	563, 632
Alw26I	GTCTC	2 cut(s)	156, 267
AlwI	GGATC	3 cut(s)	417, 430, 510
Aor51HI	AGCGCT	1 cut(s)	217
AoxI	GGCC	6 cut(s)	24, 162, 220, 348, 460, 490
ApeKI	GCWGC	2 cut(s)	106, 825
ApoI	RAATTY	2 cut(s)	368, 602
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	550
AsuC2I	CCSGG	2 cut(s)	301, 464
AsuHPI	GGTGA	1 cut(s)	569
AsuNHI	GCTAGC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	550
BalI	TGGCCA	2 cut(s)	222, 350
BamHI	GGATCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	118, 837
BccI	CCATC	7 cut(s)	109, 182, 188, 196, 260, 761, 837
BceAI	ACGGC	2 cut(s)	397, 477
BciT130I	CCWGG	4 cut(s)	224, 257, 489, 697
BcnI	CCSGG	2 cut(s)	301, 464
BcoDI	GTCTC	2 cut(s)	156, 267
BfaI	CTAG	2 cut(s)	213, 611
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	2 cut(s)	107, 826
BlsI	GCNGC	2 cut(s)	108, 827
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	6 cut(s)	224, 257, 301, 464, 489, 697
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	312, 424, 551
BmrFI	CCNGG	6 cut(s)	224, 257, 301, 464, 489, 697
BmtI	GCTAGC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	2 cut(s)	278, 679
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	2 cut(s)	301, 464
BsaJI	CCNNGG	2 cut(s)	27, 553
BsaWI	WCCGGW	1 cut(s)	803
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 499, 676
Bse1I	ACTGG	1 cut(s)	756
BseBI	CCWGG	4 cut(s)	224, 257, 489, 697
BseDI	CCNNGG	2 cut(s)	27, 553
BseGI	GGATG	2 cut(s)	193, 252
BseLI	CCNNNNNNNGG	3 cut(s)	306, 499, 676
BseNI	ACTGG	1 cut(s)	756
BseRI	GAGGAG	4 cut(s)	56, 77, 80, 83
BseXI	GCAGC	2 cut(s)	118, 837
BshFI	GGCC	6 cut(s)	26, 164, 222, 350, 462, 492
BsiSI	CCGG	3 cut(s)	300, 463, 804
BslFI	GGGAC	2 cut(s)	356, 829
BslI	CCNNNNNNNGG	3 cut(s)	306, 499, 676
BsmAI	GTCTC	2 cut(s)	156, 267
BsmFI	GGGAC	2 cut(s)	356, 829
BsnI	GGCC	6 cut(s)	26, 164, 222, 350, 462, 492
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	422, 502
BspACI	CCGC	2 cut(s)	83, 384
BspANI	GGCC	6 cut(s)	26, 164, 222, 350, 462, 492
BspLI	GGNNCC	3 cut(s)	312, 424, 551
BspMAI	CTGCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	3 cut(s)	417, 430, 510
BspTI	CTTAAG	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	27, 553
BssMI	GATC	2 cut(s)	422, 502
BssT1I	CCWWGG	2 cut(s)	27, 553
Bst2UI	CCWGG	4 cut(s)	224, 257, 489, 697
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	3 cut(s)	33, 656, 675
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	214, 220
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	193, 252
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	425, 505
BstMAI	GTCTC	2 cut(s)	156, 267
BstMBI	GATC	2 cut(s)	422, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	834
BstNI	CCWGG	4 cut(s)	224, 257, 489, 697
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	6 cut(s)	222, 255, 299, 462, 487, 695
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	118, 837
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	6 cut(s)	26, 164, 222, 350, 462, 492
BtsCI	GGATG	2 cut(s)	193, 252
Cac8I	GCNNGC	2 cut(s)	214, 220
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	304, 326, 413, 657
CviAII	CATG	4 cut(s)	166, 405, 596, 664
CviQI	GTAC	4 cut(s)	304, 326, 413, 657
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	424, 504
DpnII	GATC	2 cut(s)	422, 502
EaeI	YGGCCR	3 cut(s)	220, 348, 490
Eam1104I	CTCTTC	3 cut(s)	33, 656, 675
EarI	CTCTTC	3 cut(s)	33, 656, 675
Eco130I	CCWWGG	2 cut(s)	27, 553
Eco24I	GRGCYC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	550
Eco47III	AGCGCT	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	222, 255, 487, 695
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	27, 553
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	27, 553
FaeI	CATG	4 cut(s)	169, 408, 599, 667
FaqI	GGGAC	2 cut(s)	356, 829
FatI	CATG	4 cut(s)	165, 404, 595, 663
Fnu4HI	GCNGC	2 cut(s)	107, 826
FokI	GGATG	2 cut(s)	200, 239
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	107, 826
FspBI	CTAG	2 cut(s)	213, 611
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	2 cut(s)	107, 826
GsuI	CTGGAG	2 cut(s)	278, 679
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	26, 164, 222, 350, 462, 492
HapII	CCGG	3 cut(s)	300, 463, 804
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	169, 408, 599, 667
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	143, 260
HpaII	CCGG	3 cut(s)	300, 463, 804
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	413, 415
Hpy188I	TCNGA	3 cut(s)	99, 766, 781
Hpy8I	GTNNAC	2 cut(s)	413, 415
HpyAV	CCTTC	4 cut(s)	16, 121, 181, 574
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	834
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	169, 408, 599, 667
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	422, 502
LmnI	GCTCC	2 cut(s)	316, 694
Lsp1109I	GCAGC	2 cut(s)	118, 837
MaeI	CTAG	2 cut(s)	213, 611
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	424, 504
MboI	GATC	2 cut(s)	422, 502
MboII	GAAGA	5 cut(s)	50, 58, 643, 692, 763
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	2 cut(s)	222, 350
MluCI	AATT	6 cut(s)	156, 368, 535, 602, 712, 790
MluNI	TGGCCA	2 cut(s)	222, 350
MlyI	GAGTC	2 cut(s)	152, 269
MmeI	TCCRAC	2 cut(s)	338, 460
Mox20I	TGGCCA	2 cut(s)	222, 350
MroXI	GAANNNNTTC	1 cut(s)	606
MscI	TGGCCA	2 cut(s)	222, 350
MseI	TTAA	3 cut(s)	363, 452, 705
Msp20I	TGGCCA	2 cut(s)	222, 350
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	3 cut(s)	300, 463, 804
MspR9I	CCNGG	6 cut(s)	224, 257, 301, 464, 489, 697
MvaI	CCWGG	4 cut(s)	224, 257, 489, 697
MwoI	GCNNNNNNNGC	1 cut(s)	834
NciI	CCSGG	2 cut(s)	301, 464
NdeII	GATC	2 cut(s)	422, 502
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	4 cut(s)	169, 408, 599, 667
NlaIV	GGNNCC	3 cut(s)	312, 424, 551
NspI	RCATGY	1 cut(s)	599
PciI	ACATGT	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	676
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	108, 827
PleI	GAGTC	2 cut(s)	151, 268
PpsI	GAGTC	2 cut(s)	151, 268
PpuMI	RGGWCCY	1 cut(s)	550
PscI	ACATGT	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	4 cut(s)	222, 255, 487, 695
PspGI	CCWGG	4 cut(s)	222, 255, 487, 695
PspN4I	GGNNCC	3 cut(s)	312, 424, 551
PspPI	GGNCC	1 cut(s)	550
PspPPI	RGGWCCY	1 cut(s)	550
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	4 cut(s)	305, 327, 414, 658
RsaNI	GTAC	4 cut(s)	304, 326, 413, 657
SaqAI	TTAA	3 cut(s)	363, 452, 705
SatI	GCNGC	2 cut(s)	107, 826
Sau3AI	GATC	2 cut(s)	422, 502
Sau96I	GGNCC	1 cut(s)	550
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	2 cut(s)	152, 269
ScrFI	CCNGG	6 cut(s)	224, 257, 301, 464, 489, 697
SduI	GDGCHC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	550
SmlI	CTYRAG	2 cut(s)	362, 529
SmoI	CTYRAG	2 cut(s)	362, 529
Sse9I	AATT	6 cut(s)	156, 368, 535, 602, 712, 790
SsiI	CCGC	2 cut(s)	83, 384
SspMI	CTAG	2 cut(s)	213, 611
StyD4I	CCNGG	6 cut(s)	222, 255, 299, 462, 487, 695
StyI	CCWWGG	2 cut(s)	27, 553
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	141, 174, 195
TasI	AATT	6 cut(s)	156, 368, 535, 602, 712, 790
TatI	WGTACW	2 cut(s)	412, 656
Tru1I	TTAA	3 cut(s)	363, 452, 705
Tru9I	TTAA	3 cut(s)	363, 452, 705
TseI	GCWGC	2 cut(s)	106, 825
TspDTI	ATGAA	4 cut(s)	582, 595, 756, 764
TspGWI	ACGGA	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	368, 602
XceI	RCATGY	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	2 cut(s)	213, 611
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.