Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016807

Physical Location & Seq

Genomic Coordinates Reverse (-)

50074275 .. 50086253

Gene Structure 11979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0371800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGACCAATATGGTGGTCGAGGATACGAGCTTCAAGGATGATCAGCTGGCCGCGATGACCACCGACGACATTGTCAGGGCCACCCGTCTTCTGGACAACGAGATCCGAATTCTCAAGGCCCCTTCTCTCTCTCTAACTCTCTATGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCTGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTACCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGCTATGGAGGTTGACGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTATTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTTCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGTTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

236

Amino Acids

26.34

Weight (kDa)

4.87

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	194 - 228	5.2e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36510 FvH4_3g36510
pyrus_communis	pycom01g19970
rosa_chinensis	RchiOBHm_Chr5g0065371 RchiOBHm_Chr5g0065431
rosa_laevigata	RLG00000035787
rosa_multiflora	Rmu_co8502081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015820
rosa_rugosa	Rorug05G0371800
rosa_samantha	Rh5AG429500 Rh5BG444800 Rh5CG467100 Rh5DG457300
rosa_wichuraiana	Rw5G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	480
AfiI	CCNNNNNNNGG	6 cut(s)	94, 392, 574, 575, 605, 679
AgsI	TTSAA	3 cut(s)	37, 355, 500
AjnI	CCWGG	2 cut(s)	421, 598
AluBI	AGCT	5 cut(s)	33, 49, 175, 223, 293
AluI	AGCT	5 cut(s)	33, 49, 175, 223, 293
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	5 cut(s)	51, 81, 120, 621, 670
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	5 cut(s)	81, 121, 593, 622, 671
AsuC2I	CCSGG	2 cut(s)	625, 626
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	423, 600
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	625, 626
BfaI	CTAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	4 cut(s)	423, 600, 625, 626
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	5 cut(s)	81, 121, 593, 622, 671
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	4 cut(s)	423, 600, 625, 626
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	625, 626
BsaJI	CCNNGG	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 392, 574, 575, 605, 679
Bse1I	ACTGG	3 cut(s)	510, 610, 684
BseBI	CCWGG	2 cut(s)	423, 600
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	6 cut(s)	94, 392, 574, 575, 605, 679
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	510, 610, 684
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	5 cut(s)	53, 83, 122, 623, 672
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	6 cut(s)	94, 392, 574, 575, 605, 679
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	5 cut(s)	53, 83, 122, 623, 672
BsoBI	CYCGRG	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	43, 105, 316, 427
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	5 cut(s)	53, 83, 122, 623, 672
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	510, 610, 684
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	4 cut(s)	43, 105, 316, 427
Bst2UI	CCWGG	2 cut(s)	423, 600
BstC8I	GCNNGC	2 cut(s)	51, 670
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	46, 108, 319, 430
BstMBI	GATC	4 cut(s)	43, 105, 316, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 635
BstNI	CCWGG	2 cut(s)	423, 600
BstSCI	CCNGG	4 cut(s)	421, 598, 623, 624
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	105, 427
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	105, 427
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	5 cut(s)	53, 83, 122, 623, 672
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	51, 670
Cfr13I	GGNCC	5 cut(s)	81, 121, 593, 622, 671
Cfr9I	CCCGGG	1 cut(s)	624
CviAII	CATG	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	4 cut(s)	45, 107, 318, 429
DpnII	GATC	4 cut(s)	43, 105, 316, 427
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	421, 598
FaeI	CATG	1 cut(s)	532
FaiI	YATR	6 cut(s)	14, 147, 184, 437, 530, 591
FatI	CATG	1 cut(s)	528
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	5 cut(s)	53, 83, 122, 623, 672
HapII	CCGG	1 cut(s)	625
Hin1II	CATG	1 cut(s)	532
HincII	GTYRAC	2 cut(s)	403, 445
HindII	GTYRAC	2 cut(s)	403, 445
HinfI	GANTC	5 cut(s)	179, 205, 277, 323, 496
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	403, 445
Hpy188I	TCNGA	5 cut(s)	110, 372, 552, 660, 687
Hpy188III	TCNNGA	5 cut(s)	95, 209, 281, 320, 500
Hpy8I	GTNNAC	2 cut(s)	403, 445
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	4 cut(s)	157, 252, 638, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 635
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	43, 105, 316, 427
LmnI	GCTCC	2 cut(s)	172, 541
MaeI	CTAG	1 cut(s)	485
MalI	GATC	4 cut(s)	45, 107, 318, 429
MboI	GATC	4 cut(s)	43, 105, 316, 427
MboII	GAAGA	5 cut(s)	83, 161, 296, 311, 473
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	2 cut(s)	105, 427
MluCI	AATT	5 cut(s)	111, 152, 413, 516, 554
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	16, 289, 433, 473, 505, 606
MseI	TTAA	3 cut(s)	219, 416, 617
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	4 cut(s)	423, 600, 625, 626
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	423, 600
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	229, 635
NciI	CCSGG	2 cut(s)	625, 626
NdeII	GATC	4 cut(s)	43, 105, 316, 427
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	4 cut(s)	179, 205, 277, 496
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	421, 598
PspGI	CCWGG	2 cut(s)	421, 598
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	5 cut(s)	81, 121, 593, 622, 671
PsuI	RGATCY	2 cut(s)	105, 427
PsyI	GACNNNGTC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	219, 416, 617
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	43, 105, 316, 427
Sau96I	GGNCC	5 cut(s)	81, 121, 593, 622, 671
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	423, 600, 625, 626
SetI	ASST	8 cut(s)	35, 51, 177, 225, 295, 388, 444, 598
SinI	GGWCC	1 cut(s)	593
SmaI	CCCGGG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SrfI	GCCCGGGC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	111, 152, 413, 516, 554
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	421, 598, 623, 624
TaqI	TCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	111, 152, 413, 516, 554
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	179, 205, 277, 496
Tru1I	TTAA	3 cut(s)	219, 416, 617
Tru9I	TTAA	3 cut(s)	219, 416, 617
TspDTI	ATGAA	4 cut(s)	162, 171, 290, 303
TspMI	CCCGGG	1 cut(s)	624
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmaI	CCCGGG	1 cut(s)	624
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.