FvH4_3g36800

Isoprenylcysteine carboxyl methyltransferase (ICMT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014320
Physical Location & Seq
Forward (+)
31514087 .. 31516497
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36800.t1

Sequence Viewer

Length: 1212 bp
ATGGAAGCCAAGTCAGTCTTTCTCCACTCCAAAACACTCCCACTCTGTTATACCTTCACAGAGAGACCCAACATCTCTCTCAGGCATTTCACCAAACACCTTCCACTCAATTCTCACCTCCACCAACAAACCCTTAAACCCCTCAAAACCCCATCAAGATCATATCTTTCCCAAAACCCACTATCCTTTTCATCACCAACAACAAGAACCCATTTGTTAACTCCTCTCAAATGCTCATATTCCAGCACCACAAGCCCAGAACCTCAGAACCCATTGCTTAAACCCTTCAAGAACCTCTCTTTTGATTCATTGAGGGATACCCTTTTCAAATTAACCCCATTTGATGTGATAAAATGGTCCGGGATCTTATCAATTGCAATTGCAGCCACAAAATGGACCTCCAATTTGGTGTTGAGCCCCTTTTTCTGGATGTACTTCAGCTGGACTTGGATGTTCTGGCCTTGGTTTCTGGCTGTTTCGGTAGGCCTTTATGGGTTGTACTGTTTTCGAAAGCATTTAGTTGGTGAAGCAAGCATGTTTGAGCAGCTTGCTGTTGTTACCTCTGTTTTCACTTGGCTCACACTTGTCCCACCTGCCCATTTCAATGGCTTCCTTGAAGGTTGGCCCTATGTGTTCTTCCTTGTGTACCATTATTTCTTTTTCTTCAATGTTAGTGTGAGGAAGCGTTTGTATGGAGATTACTATGCTCGCCCACATGACCCCAAGTGGGATGTGAGCCCTCCGAGGTGGTACCGTCTTTTGTTCAGTGTTGGAGTCATGATTGGGCACTGGCTGGCTGCATTTGAAGGGCCAGAGCTGCACCGTATTCCTGGCGGTTGGAGTAATGTGGGCATTTGGGGATTGATAGTTGTCACTCTGCTAATGCAGTATAACTCGACATTGTATCTTGCAAAGTATTCCGAAAAGGTGGTGGTGCCAACGGCTGTTGTGCAGTTTGGGCCATACCGGTGGGTGCGCCATCCAATATATGCATCTACAATGCTGTTGTTTGCCACTTATTGTGTTGCGCTTAGAGCACCTTTGAGCCTGCTATTTGTCGTAGCTGTTTGTGTGATGTACTATGATCAGAAGGCGAAACTGGAGGAGGCTTTGATGATTGAGACTTTTGGGGAGAGATATATGGAGTATGCCAGTAAGGTTTGGGAAGAAGGCATTGAGATTATGCTTGAACTTGTCTGCAATGAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEMT

Protein Analysis

404

Amino Acids

46.88

Weight (kDa)

9.1

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEMT PF04191 314 - 379 5.2e-07 Phospholipid methyltransferase
ICMT PF04140 314 - 373 8e-06 Isoprenylcysteine carboxyl methyltransferase (ICMT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59500 AT5G59500
fragaria_vesca FvH4_3g36800 FvH4_3g36800
malus_domestica MD03G1088200.v1.1
prunus_persica Prupe.6G072500_v2.0.a1
pyrus_communis pycom03g06970
rosa_chinensis RchiOBHm_Chr5g0065861
rosa_laevigata RLG00000035822
rosa_multiflora Rmu_co8472781.1_g000001
rosa_roxburghii Rroxscaffold_1G00015300
rosa_rugosa Rorug05G0374600
rosa_samantha Rh5AG433100 Rh5BG449300 Rh5CG471600 Rh5DG462900
rosa_wichuraiana Rw5G040610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 601
Acc36I ACCTGC 1 cut(s) 601
Acc65I GGTACC 1 cut(s) 750
AccB1I GGYRCC 2 cut(s) 750, 934
AccB7I CCANNNNNTGG 1 cut(s) 393
AciI CCGC 1 cut(s) 834
AclWI GGATC 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 5 cut(s) 434, 500, 647, 752, 1079
AfiI CCNNNNNNNGG 3 cut(s) 393, 426, 727
AgeI ACCGGT 1 cut(s) 966
AgsI TTSAA 7 cut(s) 289, 328, 604, 617, 667, 806, 1190
AjnI CCWGG 1 cut(s) 829
AluBI AGCT 5 cut(s) 441, 547, 817, 1064, 1209
AluI AGCT 5 cut(s) 441, 547, 817, 1064, 1209
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 2 cut(s) 58, 1115
AlwI GGATC 1 cut(s) 371
AoxI GGCC 5 cut(s) 458, 484, 623, 809, 959
ApeKI GCWGC 4 cut(s) 383, 544, 797, 817
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AsiGI ACCGGT 1 cut(s) 966
Asp718I GGTACC 1 cut(s) 750
AspLEI GCGC 2 cut(s) 978, 1030
AspS9I GGNCC 5 cut(s) 357, 396, 624, 809, 959
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 4 cut(s) 82, 107, 186, 536
AsuII TTCGAA 1 cut(s) 508
AvaII GGWCC 2 cut(s) 357, 396
BaeGI GKGCMC 1 cut(s) 789
BanI GGYRCC 2 cut(s) 750, 934
BanII GRGCYC 2 cut(s) 419, 740
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 4 cut(s) 395, 556, 784, 804
BccI CCATC 2 cut(s) 160, 987
BceAI ACGGC 1 cut(s) 957
BciT130I CCWGG 1 cut(s) 831
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 1 cut(s) 1084
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 58, 1115
BfuAI ACCTGC 1 cut(s) 601
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 4 cut(s) 384, 545, 798, 818
BlsI GCNGC 4 cut(s) 385, 546, 799, 819
Bme1390I CCNGG 2 cut(s) 361, 831
Bme18I GGWCC 2 cut(s) 357, 396
BmgT120I GGNCC 5 cut(s) 357, 396, 624, 809, 959
BmiI GGNNCC 2 cut(s) 752, 936
BmrFI CCNGG 2 cut(s) 361, 831
BmsI GCATC 1 cut(s) 1001
BpmI CTGGAG 1 cut(s) 1121
Bpu14I TTCGAA 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 461, 743
BsaWI WCCGGW 1 cut(s) 966
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 426, 727
Bse118I RCCGGY 1 cut(s) 966
Bse1I ACTGG 3 cut(s) 794, 1104, 1152
Bse3DI GCAATG 2 cut(s) 272, 1207
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 461, 743
BseGI GGATG 4 cut(s) 435, 456, 736, 979
BseLI CCNNNNNNNGG 3 cut(s) 393, 426, 727
BseMI GCAATG 2 cut(s) 272, 1207
BseMII CTCAG 2 cut(s) 94, 278
BseNI ACTGG 3 cut(s) 794, 1104, 1152
BseRI GAGGAG 2 cut(s) 213, 1118
BseSI GKGCMC 1 cut(s) 789
BseXI GCAGC 4 cut(s) 395, 556, 784, 804
BsgI GTGCAG 2 cut(s) 803, 971
BshFI GGCC 5 cut(s) 460, 486, 625, 811, 961
BshNI GGYRCC 2 cut(s) 750, 934
BshTI ACCGGT 1 cut(s) 966
BsiHKAI GWGCWC 1 cut(s) 1039
BsiSI CCGG 2 cut(s) 360, 967
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 3 cut(s) 393, 426, 727
BsmAI GTCTC 2 cut(s) 58, 1115
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 5 cut(s) 460, 486, 625, 811, 961
Bso31I GGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 508
Bsp1286I GDGCHC 4 cut(s) 419, 740, 789, 1039
Bsp143I GATC 3 cut(s) 158, 363, 1084
BspACI CCGC 1 cut(s) 834
BspANI GGCC 5 cut(s) 460, 486, 625, 811, 961
BspCNI CTCAG 2 cut(s) 93, 277
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 752, 936
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 508
BspT107I GGYRCC 2 cut(s) 750, 934
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 272, 1207
BsrFI RCCGGY 1 cut(s) 966
BsrI ACTGG 3 cut(s) 794, 1104, 1152
BssAI RCCGGY 1 cut(s) 966
BssECI CCNNGG 2 cut(s) 461, 743
BssMI GATC 3 cut(s) 158, 363, 1084
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 3 cut(s) 503, 755, 824
BstBI TTCGAA 1 cut(s) 508
BstC8I GCNNGC 5 cut(s) 532, 549, 709, 795, 1049
BstDEI CTNAG 3 cut(s) 80, 264, 1031
BstF5I GGATG 4 cut(s) 435, 456, 736, 979
BstHHI GCGC 2 cut(s) 978, 1030
BstKTI GATC 3 cut(s) 161, 366, 1087
BstMAI GTCTC 2 cut(s) 58, 1115
BstMBI GATC 3 cut(s) 158, 363, 1084
BstMWI GCNNNNNNNGC 6 cut(s) 252, 383, 817, 958, 1034, 1206
BstNI CCWGG 1 cut(s) 831
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 2 cut(s) 359, 829
BstSLI GKGCMC 1 cut(s) 789
BstV1I GCAGC 4 cut(s) 395, 556, 784, 804
BstX2I RGATCY 1 cut(s) 363
BstXI CCANNNNNNTGG 2 cut(s) 605, 969
BstYI RGATCY 1 cut(s) 363
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 5 cut(s) 460, 486, 625, 811, 961
BtsCI GGATG 4 cut(s) 435, 456, 736, 979
BtsIMutI CAGTG 2 cut(s) 772, 787
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 5 cut(s) 532, 549, 709, 795, 1049
CciI TCATGA 1 cut(s) 777
CfoI GCGC 2 cut(s) 978, 1030
Cfr10I RCCGGY 1 cut(s) 966
Cfr13I GGNCC 5 cut(s) 357, 396, 624, 809, 959
Csp6I GTAC 5 cut(s) 433, 499, 646, 751, 1078
CspAI ACCGGT 1 cut(s) 966
CviAII CATG 3 cut(s) 535, 716, 778
CviQI GTAC 5 cut(s) 433, 499, 646, 751, 1078
DdeI CTNAG 3 cut(s) 80, 264, 1031
DpnI GATC 3 cut(s) 160, 365, 1086
DpnII GATC 3 cut(s) 158, 363, 1084
Eco130I CCWWGG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 419, 740
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 357, 396
Eco57I CTGAAG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 994
EcoT38I GRGCYC 2 cut(s) 419, 740
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 3 cut(s) 538, 719, 781
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 572
FatI CATG 3 cut(s) 534, 715, 777
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 384, 545, 798, 818
FokI GGATG 4 cut(s) 442, 463, 743, 966
FriOI GRGCYC 2 cut(s) 419, 740
Fsp4HI GCNGC 4 cut(s) 384, 545, 798, 818
GlaI GCGC 2 cut(s) 977, 1029
GluI GCNGC 4 cut(s) 384, 545, 798, 818
GsuI CTGGAG 1 cut(s) 1121
HaeIII GGCC 5 cut(s) 460, 486, 625, 811, 961
HapII CCGG 2 cut(s) 360, 967
HhaI GCGC 2 cut(s) 978, 1030
Hin1II CATG 3 cut(s) 538, 719, 781
Hin6I GCGC 2 cut(s) 976, 1028
HinP1I GCGC 2 cut(s) 976, 1028
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 2 cut(s) 305, 774
HpaI GTTAAC 1 cut(s) 219
HpaII CCGG 2 cut(s) 360, 967
HphI GGTGA 4 cut(s) 82, 107, 186, 536
Hpy166II GTNNAC 2 cut(s) 219, 646
Hpy188I TCNGA 4 cut(s) 267, 744, 922, 1089
Hpy188III TCNNGA 4 cut(s) 156, 289, 427, 778
Hpy8I GTNNAC 2 cut(s) 219, 646
HpyAV CCTTC 7 cut(s) 64, 110, 295, 611, 800, 1084, 1163
HpyCH4III ACNGT 3 cut(s) 503, 755, 824
HpyCH4V TGCA 9 cut(s) 377, 383, 800, 820, 886, 911, 952, 992, 1200
HpyF10VI GCNNNNNNNGC 6 cut(s) 252, 383, 817, 958, 1034, 1206
HpyF3I CTNAG 3 cut(s) 80, 264, 1031
Hsp92II CATG 3 cut(s) 538, 719, 781
HspAI GCGC 2 cut(s) 976, 1028
KpnI GGTACC 1 cut(s) 754
Ksp22I TGATCA 1 cut(s) 1084
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 158, 363, 1084
Lsp1109I GCAGC 4 cut(s) 395, 556, 784, 804
LweI GCATC 1 cut(s) 1001
MaeIII GTNAC 2 cut(s) 556, 871
MalI GATC 3 cut(s) 160, 365, 1086
MboI GATC 3 cut(s) 158, 363, 1084
MboII GAAGA 3 cut(s) 628, 655, 1178
MfeI CAATTG 2 cut(s) 372, 378
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 4 cut(s) 419, 740, 789, 1039
MluCI AATT 5 cut(s) 109, 329, 372, 378, 403
MlyI GAGTC 1 cut(s) 783
MmeI TCCRAC 2 cut(s) 751, 818
Mph1103I ATGCAT 1 cut(s) 994
MseI TTAA 4 cut(s) 135, 218, 279, 332
MslI CAYNNNNRTG 2 cut(s) 603, 967
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 2 cut(s) 360, 967
MspR9I CCNGG 2 cut(s) 361, 831
MunI CAATTG 2 cut(s) 372, 378
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 6 cut(s) 252, 383, 817, 958, 1034, 1206
NciI CCSGG 1 cut(s) 361
NdeII GATC 3 cut(s) 158, 363, 1084
NlaIII CATG 3 cut(s) 538, 719, 781
NlaIV GGNNCC 2 cut(s) 752, 936
NmuCI GTSAC 1 cut(s) 871
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 538
NspV TTCGAA 1 cut(s) 508
PagI TCATGA 1 cut(s) 777
PaqCI CACCTGC 1 cut(s) 601
PceI AGGCCT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 393
PfoI TCCNGGA 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 966
PkrI GCNGC 4 cut(s) 385, 546, 799, 819
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 752, 936
PspPI GGNCC 5 cut(s) 357, 396, 624, 809, 959
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 5 cut(s) 434, 500, 647, 752, 1079
RsaNI GTAC 5 cut(s) 433, 499, 646, 751, 1078
RseI CAYNNNNRTG 2 cut(s) 603, 967
SaqAI TTAA 4 cut(s) 135, 218, 279, 332
SatI GCNGC 4 cut(s) 384, 545, 798, 818
Sau3AI GATC 3 cut(s) 158, 363, 1084
Sau96I GGNCC 5 cut(s) 357, 396, 624, 809, 959
SchI GAGTC 1 cut(s) 783
ScrFI CCNGG 2 cut(s) 361, 831
SduI GDGCHC 4 cut(s) 419, 740, 789, 1039
SfaNI GCATC 1 cut(s) 1001
SfuI TTCGAA 1 cut(s) 508
SinI GGWCC 2 cut(s) 357, 396
SmiMI CAYNNNNRTG 2 cut(s) 603, 967
Sse9I AATT 5 cut(s) 109, 329, 372, 378, 403
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 1 cut(s) 834
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 359, 829
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 503, 755, 824
TaqI TCGA 2 cut(s) 508, 896
TasI AATT 5 cut(s) 109, 329, 372, 378, 403
TatI WGTACW 3 cut(s) 432, 498, 1077
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 4 cut(s) 135, 218, 279, 332
Tru9I TTAA 4 cut(s) 135, 218, 279, 332
TscAI CASTG 2 cut(s) 772, 794
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 4 cut(s) 383, 544, 797, 817
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 2 cut(s) 180, 297
TspRI CASTG 2 cut(s) 772, 794
Van91I CCANNNNNTGG 1 cut(s) 393
VpaK11BI GGWCC 2 cut(s) 357, 396
XceI RCATGY 1 cut(s) 538
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.