FvH4_3g36951

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017278
Physical Location & Seq
Reverse (-)
31651561 .. 31652731
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36951.t1

Sequence Viewer

Length: 618 bp
ATGATGGAGTCTGGTGATCAGCAAACTCCAGAAAATTCAGGTGATCAGCAAGTTACGAGCCAGGTAGCTGCAGCAAAGTCCTACGAGTGTACTTTTTGCAAAAGAGGGTTTTCTAACGCACAAGCTCTAGGAGGGCATATGAACATTCACAGAAAAGATAAAGCAAAGCTCAAGCAAGTCTCCTCATCAGCAAACATTGTTGAAACCAAACAACAACAACAAAGATTGCCTGTAGAGATCCCGAAGATGCCGCAGTCTTACTCTCCCATACTTCTCAAGGTTAATCCCAGCATCACTTCTTCGGAAGCCGTTGCCGATCATATCGAAAGAAGTGCTACAACAATAAGGGAATCTTCATGGCCGGCTGATTGGTTTCTCAATGATAAAGAAGGTGAAAATAAATTACGCCATCAACTTCCACTGTTTTCTCAAGCACCATCGGATCAAGATCATCACAGTCAAGGTGGACAACAACAACAACTAGAAGATCATGGGAATCAAAGTGATAAGGGTTCAGATTTAGATCTTGAGCTCAGACTAGGGCCTGAGCCTCAAGATTCTTCATCAACGCCCGGAAAAGCTACTACGAGAAATACGCGTTATGGTTCTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.69

Weight (kDa)

6.05

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 28 - 52 8.6e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017278)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36951
malus_domestica MD03G1085800.v1.1
prunus_persica Prupe.6G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066391
rosa_laevigata RLG00000035856
rosa_multiflora Rmu_ssc0000249.1_g000010
rosa_roxburghii Rroxscaffold_1G00014760
rosa_rugosa Rorug05G0377900
rosa_samantha Rh5AG436300 Rh5BG452700 Rh5CG475100 Rh5DG467900
rosa_wichuraiana Rw5G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 598
AciI CCGC 1 cut(s) 251
AclWI GGATC 2 cut(s) 232, 450
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 5 cut(s) 68, 125, 169, 532, 581
AluI AGCT 5 cut(s) 68, 125, 169, 532, 581
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 232, 450
AoxI GGCC 2 cut(s) 359, 542
ApeKI GCWGC 2 cut(s) 68, 71
ApoI RAATTY 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 26, 53, 404
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 55, 83
BccI CCATC 2 cut(s) 417, 445
BceAI ACGGC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 2 cut(s) 16, 43
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 3 cut(s) 128, 482, 539
BfmI CTRYAG 2 cut(s) 69, 231
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 69, 72, 251
BlsI GCNGC 3 cut(s) 70, 73, 252
Bme1390I CCNGG 2 cut(s) 62, 573
BmgT120I GGNCC 1 cut(s) 542
BmrFI CCNGG 2 cut(s) 62, 573
BmsI GCATC 2 cut(s) 237, 300
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 5 cut(s) 155, 260, 414, 537, 548
BpuMI CCSGG 1 cut(s) 573
BsaBI GATNNNNATC 2 cut(s) 447, 522
Bse118I RCCGGY 1 cut(s) 361
Bse8I GATNNNNATC 2 cut(s) 447, 522
BseBI CCWGG 1 cut(s) 62
BseJI GATNNNNATC 2 cut(s) 447, 522
BseMII CTCAG 2 cut(s) 537, 547
BseRI GAGGAG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 55, 83
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 361, 544
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 2 cut(s) 362, 573
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 2 cut(s) 361, 544
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 361, 544
BspCNI CTCAG 2 cut(s) 538, 546
BspFNI CGCG 1 cut(s) 598
BspMAI CTGCAG 1 cut(s) 73
BspPI GGATC 2 cut(s) 232, 450
BsrFI RCCGGY 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 361
BssMI GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 423, 458
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 533, 546
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 8 cut(s) 19, 46, 240, 319, 445, 451, 490, 526
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 60, 571
BstSFI CTRYAG 2 cut(s) 69, 231
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 55, 83
BstX2I RGATCY 2 cut(s) 237, 523
BstYI RGATCY 2 cut(s) 237, 523
BsuRI GGCC 2 cut(s) 361, 544
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 357, 491
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 533, 546
DpnI GATC 8 cut(s) 18, 45, 239, 318, 444, 450, 489, 525
DpnII GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
EaeI YGGCCR 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 2 cut(s) 360, 494
FaiI YATR 7 cut(s) 138, 140, 269, 321, 358, 492, 603
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FatI CATG 2 cut(s) 356, 490
FauNDI CATATG 1 cut(s) 138
FbaI TGATCA 2 cut(s) 16, 43
Fnu4HI GCNGC 3 cut(s) 69, 72, 251
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 69, 72, 251
FspBI CTAG 3 cut(s) 128, 482, 539
GluI GCNGC 3 cut(s) 69, 72, 251
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 2 cut(s) 361, 544
HapII CCGG 2 cut(s) 362, 573
Hin1II CATG 2 cut(s) 360, 494
HinfI GANTC 4 cut(s) 8, 350, 496, 557
HpaII CCGG 2 cut(s) 362, 573
HphI GGTGA 3 cut(s) 26, 53, 404
Hpy166II GTNNAC 2 cut(s) 90, 467
Hpy188I TCNGA 4 cut(s) 304, 442, 517, 536
Hpy188III TCNNGA 5 cut(s) 29, 241, 446, 527, 554
Hpy8I GTNNAC 2 cut(s) 90, 467
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 2 cut(s) 423, 458
HpyCH4V TGCA 2 cut(s) 71, 99
HpyF3I CTNAG 2 cut(s) 533, 546
Hsp92II CATG 2 cut(s) 360, 494
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Ksp22I TGATCA 2 cut(s) 16, 43
Kzo9I GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
LpnPI CCDG 9 cut(s) 24, 42, 47, 74, 243, 301, 375, 558, 586
Lsp1109I GCAGC 2 cut(s) 55, 83
LweI GCATC 2 cut(s) 237, 300
MaeI CTAG 3 cut(s) 128, 482, 539
MaeIII GTNAC 1 cut(s) 52
MalI GATC 8 cut(s) 18, 45, 239, 318, 444, 450, 489, 525
MboI GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
MboII GAAGA 5 cut(s) 256, 291, 345, 497, 552
MflI RGATCY 2 cut(s) 237, 523
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 2 cut(s) 34, 401
MluI ACGCGT 1 cut(s) 596
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 4 cut(s) 98, 125, 193, 561
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 362, 573
MspR9I CCNGG 2 cut(s) 62, 573
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 598
NaeI GCCGGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 573
NdeI CATATG 1 cut(s) 138
NdeII GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 360, 494
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 350, 496, 557
PkrI GCNGC 3 cut(s) 70, 73, 252
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 542
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 237, 523
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 69, 72, 251
Sau3AI GATC 8 cut(s) 16, 43, 237, 316, 442, 448, 487, 523
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 62, 573
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 2 cut(s) 237, 300
SfcI CTRYAG 2 cut(s) 69, 231
SmlI CTYRAG 5 cut(s) 170, 275, 429, 527, 552
SmoI CTYRAG 5 cut(s) 170, 275, 429, 527, 552
Sse9I AATT 2 cut(s) 34, 401
SsiI CCGC 1 cut(s) 251
SspMI CTAG 3 cut(s) 128, 482, 539
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 60, 571
TaaI ACNGT 2 cut(s) 423, 458
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 34, 401
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 350, 496, 557
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 426
TseI GCWGC 2 cut(s) 68, 71
TspDTI ATGAA 3 cut(s) 155, 345, 552
TspRI CASTG 1 cut(s) 426
XapI RAATTY 1 cut(s) 34
XspI CTAG 3 cut(s) 128, 482, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.