Prupe.6G070100_v2.0.a1

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017278
Physical Location & Seq
Forward (+)
4813540 .. 4814151
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G070100.1

Sequence Viewer

Length: 612 bp
ATGGAGTCTGATCAGGCAATTCAAGAAAACTCAGAGCAGGTCTCGGATGATAAGCAAGGTGCAAGCCAAGCAGCAAAGTCATATGAGTGCACTTTTTGTAAAAGAGGGTTTTCTAATGCGCAAGCTTTAGGAGGGCACATGAACATTCACCGAAAAGACAAAGCCAAGCTCAAGCAAGTCTCCTCATCGAATACTATTGAAACTAAACAACACCAACAACAACAACAAAGACTTTTGGACATCCCAAAGATGCCCTCCTCGTATTCTTCTCCAATAGTTCCTACCATCAATTCTTCAGAACACAATAAGCTTAAGCCTAGTCGTGATGCTGAAAGAAACACATCGACATGGCCTTGGTTTCTCAACGAAGAAGGTGATGCCACCATGAGGCATAATATTGATCCAAACCATCTTTCCCAAGTCCAACAACAACTCCCACTATTTTCTCAAGCAACATCACAGGCCAGAGTTCACGAAAATCCAGGTTTACGACAAGTTCATGGGGATCAGGGTTTGCAGCCATCGGCTTCGGAGTTAGACCTTGAGCTTAGGCTAGGGCCTGAGCGTCAAGATTCATCATCAAAGGCAAACACTACAAGAAAGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.85

Weight (kDa)

7.1

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017278)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36951
malus_domestica MD03G1085800.v1.1
prunus_persica Prupe.6G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066391
rosa_laevigata RLG00000035856
rosa_multiflora Rmu_ssc0000249.1_g000010
rosa_roxburghii Rroxscaffold_1G00014760
rosa_rugosa Rorug05G0377900
rosa_samantha Rh5AG436300 Rh5BG452700 Rh5CG475100 Rh5DG467900
rosa_wichuraiana Rw5G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 395, 513
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 387
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 23, 200
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
AluBI AGCT 4 cut(s) 125, 169, 310, 547
AluI AGCT 4 cut(s) 125, 169, 310, 547
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 46, 184
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 2 cut(s) 395, 513
AoxI GGCC 3 cut(s) 350, 462, 557
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 71, 517
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 2 cut(s) 140, 386
BaeGI GKGCMC 2 cut(s) 92, 138
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 83, 529
BccI CCATC 3 cut(s) 293, 417, 529
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 46, 184
BfaI CTAG 2 cut(s) 318, 554
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 2 cut(s) 72, 518
BlsI GCNGC 2 cut(s) 73, 519
Bme1390I CCNGG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 557
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 3 cut(s) 240, 316, 367
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 2 cut(s) 548, 561
BpuEI CTTGAG 3 cut(s) 155, 432, 563
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 52, 240
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 45, 552
BseRI GAGGAG 2 cut(s) 172, 247
BseSI GKGCMC 2 cut(s) 92, 138
BseXI GCAGC 2 cut(s) 83, 529
BshFI GGCC 3 cut(s) 352, 464, 559
BsiHKAI GWGCWC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 2 cut(s) 46, 184
BsnI GGCC 3 cut(s) 352, 464, 559
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 92, 138
Bsp143I GATC 3 cut(s) 10, 400, 505
BspANI GGCC 3 cut(s) 352, 464, 559
BspCNI CTCAG 2 cut(s) 44, 553
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 395, 513
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 10, 400, 505
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 64, 123
BstDEI CTNAG 3 cut(s) 31, 548, 561
BstF5I GGATG 2 cut(s) 52, 240
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 13, 403, 508
BstMAI GTCTC 2 cut(s) 46, 184
BstMBI GATC 3 cut(s) 10, 400, 505
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstSLI GKGCMC 2 cut(s) 92, 138
BstV1I GCAGC 2 cut(s) 83, 529
BsuRI GGCC 3 cut(s) 352, 464, 559
BtsCI GGATG 2 cut(s) 52, 240
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 64, 123
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 557
CseI GACGC 1 cut(s) 554
CviAII CATG 4 cut(s) 139, 348, 385, 500
DdeI CTNAG 3 cut(s) 31, 548, 561
DpnI GATC 3 cut(s) 12, 402, 507
DpnII GATC 3 cut(s) 10, 400, 505
Eco130I CCWWGG 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 4 cut(s) 142, 351, 388, 503
FaiI YATR 7 cut(s) 82, 84, 140, 349, 386, 393, 501
FatI CATG 4 cut(s) 138, 347, 384, 499
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 72, 518
FokI GGATG 2 cut(s) 59, 227
Fsp4HI GCNGC 2 cut(s) 72, 518
FspBI CTAG 2 cut(s) 318, 554
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 72, 518
HaeIII GGCC 3 cut(s) 352, 464, 559
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 142, 351, 388, 503
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 123, 308
HinfI GANTC 2 cut(s) 5, 572
HphI GGTGA 2 cut(s) 140, 386
Hpy166II GTNNAC 3 cut(s) 90, 472, 488
Hpy188I TCNGA 5 cut(s) 10, 34, 46, 298, 532
Hpy188III TCNNGA 4 cut(s) 23, 323, 473, 569
Hpy8I GTNNAC 3 cut(s) 90, 472, 488
HpyAV CCTTC 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 62, 90, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 31, 548, 561
Hsp92II CATG 4 cut(s) 142, 351, 388, 503
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 400, 505
LpnPI CCDG 7 cut(s) 23, 446, 468, 478, 494, 495, 573
Lsp1109I GCAGC 2 cut(s) 83, 529
LweI GCATC 3 cut(s) 240, 316, 367
MaeI CTAG 2 cut(s) 318, 554
MalI GATC 3 cut(s) 12, 402, 507
MboI GATC 3 cut(s) 10, 400, 505
MboII GAAGA 3 cut(s) 258, 285, 380
MhlI GDGCHC 2 cut(s) 92, 138
MluCI AATT 2 cut(s) 18, 289
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 6 cut(s) 98, 125, 193, 265, 268, 381
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 85, 346
MspCI CTTAAG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 82
NdeII GATC 3 cut(s) 10, 400, 505
NlaIII CATG 4 cut(s) 142, 351, 388, 503
NsbI TGCGCA 1 cut(s) 120
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 73, 519
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 557
RseI CAYNNNNRTG 2 cut(s) 85, 346
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 72, 518
Sau3AI GATC 3 cut(s) 10, 400, 505
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 92, 138
SetI ASST 9 cut(s) 42, 61, 127, 171, 312, 376, 487, 543, 549
SfaNI GCATC 3 cut(s) 240, 316, 367
SmiMI CAYNNNNRTG 2 cut(s) 85, 346
SmlI CTYRAG 4 cut(s) 170, 311, 447, 542
SmoI CTYRAG 4 cut(s) 170, 311, 447, 542
Sse9I AATT 2 cut(s) 18, 289
SspI AATATT 1 cut(s) 397
SspMI CTAG 2 cut(s) 318, 554
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 2 cut(s) 188, 344
TasI AATT 2 cut(s) 18, 289
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 2 cut(s) 71, 517
TspDTI ATGAA 3 cut(s) 155, 488, 564
Vha464I CTTAAG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 88
XspI CTAG 2 cut(s) 318, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.