MD03G1085800.v1.1

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017278
Physical Location & Seq
Forward (+)
7000940 .. 7001545
606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1085800.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGATTCTAGTCAGGCAAATCAAGAAAATTCAGACCAGGTGATGACATCGGATGATCAACAACAACAAGGAGCAAGCAAACAAGCAGCAAAGTCGTATGAGTGCAATTTTTGTAAAAGAGGGTTTACTAATGCACAAGCTTTAGGAGGGCACATGAACATTCACCGAAAAGACAAGGCCAAGCTCAAGCAAGTCTCCTCATCTAATACTATCGAAACTAAACACCACCAACAACAACAACAAAAACAAAACGTTTTGGACTTCCCAAAGATGCCATCCTTGGACTCTCCAATACTCCCTACCATCAATTCTTTGCAACACAATAAGCCTATTGGTCGTGATATTGATAGAAACACAATAAGGGCACCATGGCCTTGGTTGATCAGTGAAAAAAGTGACACCACTATGCAACAACTCGCACTGTTTTCTCAGACACCATCACATAACAAAGATCATCAAAATCCAGGTACACCACAAGTTCACGGGGATCAACTTGAAAACAGTTTGCAGTTATCTGGTTCGGAGTTAGACCTTGAGCTTAGACTAGGACCTGAGCCTCAAAATTCATCGTCATCAACGGCAAATACTACAAGAAAGTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

7.1

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017278)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36951
malus_domestica MD03G1085800.v1.1
prunus_persica Prupe.6G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066391
rosa_laevigata RLG00000035856
rosa_multiflora Rmu_ssc0000249.1_g000010
rosa_roxburghii Rroxscaffold_1G00014760
rosa_rugosa Rorug05G0377900
rosa_samantha Rh5AG436300 Rh5BG452700 Rh5CG475100 Rh5DG467900
rosa_wichuraiana Rw5G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AclI AACGTT 1 cut(s) 252
AclWI GGATC 1 cut(s) 495
AcsI RAATTY 2 cut(s) 28, 562
AfaI GTAC 1 cut(s) 469
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 2 cut(s) 36, 463
AluBI AGCT 3 cut(s) 140, 184, 538
AluI AGCT 3 cut(s) 140, 184, 538
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 495
AoxI GGCC 2 cut(s) 177, 371
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 28, 562
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 2 cut(s) 52, 155
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 2 cut(s) 153, 367
BanI GGYRCC 1 cut(s) 364
BbvI GCAGC 1 cut(s) 98
BccI CCATC 3 cut(s) 283, 311, 445
BceAI ACGGC 1 cut(s) 594
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 38, 465
BclI TGATCA 2 cut(s) 55, 381
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 9, 545
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 38, 465
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 38, 465
BmsI GCATC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 170, 554
BsaJI CCNNGG 3 cut(s) 279, 368, 374
BseBI CCWGG 2 cut(s) 38, 465
BseDI CCNNGG 3 cut(s) 279, 368, 374
BseGI GGATG 2 cut(s) 58, 275
BseMII CTCAG 2 cut(s) 443, 543
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 2 cut(s) 153, 367
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 179, 373
BshNI GGYRCC 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 179, 373
Bsp1286I GDGCHC 2 cut(s) 153, 367
Bsp143I GATC 4 cut(s) 55, 381, 451, 487
Bsp19I CCATGG 1 cut(s) 368
BspANI GGCC 2 cut(s) 179, 373
BspCNI CTCAG 2 cut(s) 442, 544
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 279, 368, 374
BssMI GATC 4 cut(s) 55, 381, 451, 487
BssT1I CCWWGG 3 cut(s) 279, 368, 374
Bst2UI CCWGG 2 cut(s) 38, 465
Bst4CI ACNGT 2 cut(s) 423, 503
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 429, 539, 552
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 58, 275
BstKTI GATC 4 cut(s) 58, 384, 454, 490
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 4 cut(s) 55, 381, 451, 487
BstNI CCWGG 2 cut(s) 38, 465
BstSCI CCNGG 2 cut(s) 36, 463
BstSLI GKGCMC 2 cut(s) 153, 367
BstV1I GCAGC 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 375
BsuRI GGCC 2 cut(s) 179, 373
BtgI CCRYGG 1 cut(s) 368
BtsCI GGATG 2 cut(s) 58, 275
BtsIMutI CAGTG 2 cut(s) 391, 419
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 154, 369
CviJI RGCY 7 cut(s) 140, 179, 184, 328, 373, 538, 556
CviKI_1 RGCY 7 cut(s) 140, 179, 184, 328, 373, 538, 556
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 429, 539, 552
DpnI GATC 4 cut(s) 57, 383, 453, 489
DpnII GATC 4 cut(s) 55, 381, 451, 487
Eco130I CCWWGG 3 cut(s) 279, 368, 374
Eco47I GGWCC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 36, 463
EcoT14I CCWWGG 3 cut(s) 279, 368, 374
ErhI CCWWGG 3 cut(s) 279, 368, 374
FaeI CATG 2 cut(s) 157, 372
FaiI YATR 5 cut(s) 99, 155, 370, 407, 444
FatI CATG 2 cut(s) 153, 368
FbaI TGATCA 2 cut(s) 55, 381
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 2 cut(s) 65, 262
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 9, 545
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 179, 373
Hin1II CATG 2 cut(s) 157, 372
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 2 cut(s) 5, 284
HphI GGTGA 2 cut(s) 52, 155
Hpy166II GTNNAC 3 cut(s) 126, 470, 481
Hpy188I TCNGA 5 cut(s) 34, 52, 432, 523, 605
Hpy188III TCNNGA 2 cut(s) 23, 338
Hpy8I GTNNAC 3 cut(s) 126, 470, 481
HpyCH4III ACNGT 2 cut(s) 423, 503
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 105, 134, 316, 409, 508
HpyF3I CTNAG 3 cut(s) 429, 539, 552
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 2 cut(s) 157, 372
Ksp22I TGATCA 2 cut(s) 55, 381
Kzo9I GATC 4 cut(s) 55, 381, 451, 487
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 23, 50, 450, 477, 501, 564
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 36
MaeI CTAG 2 cut(s) 9, 545
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 57, 383, 453, 489
MboI GATC 4 cut(s) 55, 381, 451, 487
MboII GAAGA 1 cut(s) 592
MhlI GDGCHC 2 cut(s) 153, 367
MluCI AATT 4 cut(s) 28, 106, 307, 562
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 113, 140, 208, 567
MslI CAYNNNNRTG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 38, 465
MvaI CCWGG 2 cut(s) 38, 465
NcoI CCATGG 1 cut(s) 368
NdeII GATC 4 cut(s) 55, 381, 451, 487
NlaIII CATG 2 cut(s) 157, 372
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 395
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 36, 463
PspGI CCWGG 2 cut(s) 36, 463
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 548
PspPPI RGGWCCY 1 cut(s) 548
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 404
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 4 cut(s) 55, 381, 451, 487
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 38, 465
SduI GDGCHC 2 cut(s) 153, 367
SetI ASST 8 cut(s) 42, 142, 186, 255, 469, 534, 540, 553
SexAI ACCWGGT 1 cut(s) 36
SfaNI GCATC 1 cut(s) 261
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 185, 533
SmoI CTYRAG 2 cut(s) 185, 533
Sse9I AATT 4 cut(s) 28, 106, 307, 562
SspMI CTAG 2 cut(s) 9, 545
StyD4I CCNGG 2 cut(s) 36, 463
StyI CCWWGG 3 cut(s) 279, 368, 374
TaaI ACNGT 2 cut(s) 423, 503
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 28, 106, 307, 562
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 2 cut(s) 391, 426
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 170, 555
TspRI CASTG 2 cut(s) 391, 426
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 2 cut(s) 28, 562
XspI CTAG 2 cut(s) 9, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.