RLG00000035856

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017278
Physical Location & Seq
Reverse (-)
72632069 .. 72633184
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035856

Sequence Viewer

Length: 621 bp
ATGGAGTCTGGAGATCAACAAACTCCAGAAAATTCAGGTGATCAGCAAGTTACAAGCCAAGTAGCTGCTGCAAAGTCCTATGAGTGTACTTTTTGCAAAAGGGGGTTCTCTAATGCACAAGCTCTAGGAGGGCACATGAATATTCACAGAAAAGATAAAGCAAAGCTCAAGCAAGTCTCCACATCAACAAATGTTGTTGAAACCAAACAACAACGAAGATTGCCTTTGGAGATCCCAAAGATGCCACCCTCTTACTCTCCAGTACTTCCCAAGATTAATCCCAGCATCACTTCTTTGGAAGCCATTAACATGCCTCATGCCGATCATATCGAAAGAAGTGCTACAACAATAAGGGGATCATCATGGCCGGCTGATTGGTTTCTCAATGCTAAAGAAGGTGATAATCTATTAAACCAAGTCCAACAACTTCCACTGTTTTCTCAAGCACCGTCAGATCAAGATCATCAATATCAAGGTAGACAACACCAACAACAACAACCAGAAGTTCAAGGGGATCAAAGTGAAAAGGATTCAGATTTAGACCTTGAGCTTAGACTAGGGCCCGAGCCTCAAGATTCCTCATCAACGTCCGCAAAAGCTACTACGAGAAAGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.97

Weight (kDa)

6.07

Isoelectric Point (pI)

67.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 27 - 51 8.7e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017278)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36951
malus_domestica MD03G1085800.v1.1
prunus_persica Prupe.6G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066391
rosa_laevigata RLG00000035856
rosa_multiflora Rmu_ssc0000249.1_g000010
rosa_roxburghii Rroxscaffold_1G00014760
rosa_rugosa Rorug05G0377900
rosa_samantha Rh5AG436300 Rh5BG452700 Rh5CG475100 Rh5DG467900
rosa_wichuraiana Rw5G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 478
AciI CCGC 1 cut(s) 591
AclWI GGATC 3 cut(s) 226, 364, 522
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 2 cut(s) 88, 264
AgsI TTSAA 2 cut(s) 200, 509
AluBI AGCT 5 cut(s) 65, 122, 166, 550, 599
AluI AGCT 5 cut(s) 65, 122, 166, 550, 599
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 3 cut(s) 226, 364, 522
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 2 cut(s) 365, 560
ApaI GGGCCC 1 cut(s) 564
ApeKI GCWGC 2 cut(s) 65, 68
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 560, 561
AsuHPI GGTGA 2 cut(s) 50, 410
AvaI CYCGRG 1 cut(s) 563
BaeGI GKGCMC 2 cut(s) 135, 564
BanII GRGCYC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 52, 55
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 125, 557
BisI GCNGC 2 cut(s) 66, 69
BlsI GCNGC 2 cut(s) 67, 70
BmcAI AGTACT 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 2 cut(s) 560, 561
BmiI GGNNCC 1 cut(s) 562
BmsI GCATC 2 cut(s) 231, 294
BpmI CTGGAG 3 cut(s) 9, 30, 243
BpuEI CTTGAG 4 cut(s) 152, 426, 555, 566
BsaBI GATNNNNATC 1 cut(s) 459
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 459
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 2 cut(s) 135, 564
BseXI GCAGC 2 cut(s) 52, 55
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 2 cut(s) 367, 562
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 2 cut(s) 367, 562
BsoBI CYCGRG 1 cut(s) 563
Bsp120I GGGCCC 1 cut(s) 560
Bsp1286I GDGCHC 2 cut(s) 135, 564
Bsp143I GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
BspACI CCGC 1 cut(s) 591
BspANI GGCC 2 cut(s) 367, 562
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 3 cut(s) 226, 364, 522
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 367
BssMI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
Bst4CI ACNGT 2 cut(s) 435, 450
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 551
BstKTI GATC 8 cut(s) 16, 43, 234, 325, 359, 457, 463, 517
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
BstNSI RCATGY 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 135, 564
BstV1I GCAGC 2 cut(s) 52, 55
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 367, 562
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 560, 561
Csp6I GTAC 2 cut(s) 87, 263
CviAII CATG 4 cut(s) 136, 310, 317, 363
CviQI GTAC 2 cut(s) 87, 263
DdeI CTNAG 1 cut(s) 551
DpnI GATC 8 cut(s) 15, 42, 233, 324, 358, 456, 462, 516
DpnII GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
EaeI YGGCCR 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 564
FaeI CATG 4 cut(s) 139, 313, 320, 366
FaiI YATR 6 cut(s) 81, 137, 311, 318, 327, 364
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 4 cut(s) 135, 309, 316, 362
FbaI TGATCA 1 cut(s) 40
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 66, 69
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 2 cut(s) 66, 69
FspBI CTAG 2 cut(s) 125, 557
GluI GCNGC 2 cut(s) 66, 69
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 3 cut(s) 9, 30, 243
HaeIII GGCC 2 cut(s) 367, 562
HapII CCGG 1 cut(s) 368
Hin1II CATG 4 cut(s) 139, 313, 320, 366
HinfI GANTC 3 cut(s) 5, 530, 575
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 50, 410
Hpy166II GTNNAC 2 cut(s) 87, 479
Hpy188I TCNGA 2 cut(s) 454, 535
Hpy188III TCNNGA 4 cut(s) 9, 26, 458, 572
Hpy8I GTNNAC 2 cut(s) 87, 479
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 435, 450
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 3 cut(s) 71, 96, 116
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 587
Hsp92II CATG 4 cut(s) 139, 313, 320, 366
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
LpnPI CCDG 6 cut(s) 21, 39, 273, 295, 381, 513
Lsp1109I GCAGC 2 cut(s) 52, 55
LweI GCATC 2 cut(s) 231, 294
MaeI CTAG 2 cut(s) 125, 557
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 1 cut(s) 49
MalI GATC 8 cut(s) 15, 42, 233, 324, 358, 456, 462, 516
MboI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 135, 564
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 5 cut(s) 122, 259, 324, 579, 589
MroNI GCCGGC 1 cut(s) 367
MseI TTAA 3 cut(s) 276, 306, 410
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 369
NdeII GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 139, 313, 320, 366
NlaIV GGNNCC 1 cut(s) 562
NspI RCATGY 1 cut(s) 313
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 530, 575
PkrI GCNGC 2 cut(s) 67, 70
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 562
PspOMI GGGCCC 1 cut(s) 560
PspPI GGNCC 2 cut(s) 560, 561
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 88, 264
RsaNI GTAC 2 cut(s) 87, 263
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 276, 306, 410
SatI GCNGC 2 cut(s) 66, 69
Sau3AI GATC 8 cut(s) 13, 40, 231, 322, 356, 454, 460, 514
Sau96I GGNCC 2 cut(s) 560, 561
ScaI AGTACT 1 cut(s) 264
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 135, 564
SfaNI GCATC 2 cut(s) 231, 294
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 4 cut(s) 167, 441, 545, 570
SmoI CTYRAG 4 cut(s) 167, 441, 545, 570
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 591
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 125, 557
TaaI ACNGT 2 cut(s) 435, 450
TaiI ACGT 1 cut(s) 590
TaqI TCGA 1 cut(s) 330
TasI AATT 1 cut(s) 31
TatI WGTACW 2 cut(s) 86, 262
TfiI GAWTC 2 cut(s) 530, 575
Tru1I TTAA 3 cut(s) 276, 306, 410
Tru9I TTAA 3 cut(s) 276, 306, 410
TscAI CASTG 1 cut(s) 438
TseI GCWGC 2 cut(s) 65, 68
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 2 cut(s) 125, 557
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.