Rh5AG436300

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017278
Physical Location & Seq
Reverse (-)
74949231 .. 74956619
7389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG436300.1

Sequence Viewer

Length: 843 bp
ATGGAGTCTGGTGATCAACAAACTCCAGAAAATTCAGGTGATCAGCAAGTTACAAGCCAAGTAGCTGCTGCAAAGTCCTATGAGTGTACTTTTTGCAAAAGGGGGTTCTCTAATGCACAAGCTCTAGGAGGGCACATGAATATTCACAGAAAAGATAAAGCAAAGCTCAAGCAAGTCTCCTCATCAACAAATGTTGTTGAAACCAAACAACAACAAAGATTGCTTTTGGAGATCCCAAAGATGCCACCCTCTTACTCTCCAATACTTCCCAAGATTAATCATCAGAGCATCACTACTTTGGAAGCCATTAACATGCCTCATGCTGATCATATCGAAAGAAGTGCTACAACAATAAGGGGAATATCATGGCCGGCTGAATGGTTTCTCAATGCTAAAGAAGGTGATAATCAATTAAACCAAGTCCAACAACTTCCACTGTTTTCTCAAGCACCATCAGATCATGATCATCAATATCAAGGTGGACAACAACAACAACCAGAAGTTCAAGGGGATCAAAGTGAAAAGGGTTCAGATTTAGACCTTGAGCTTAGATTGGGGCCCGAGCCTGAAGATTCCTCATCAACGTCGGCAAAAGCTACTACGAGAAACATGTATAGTAGAAGTAAGACTAGAACAAATGTTCCCATCGGAATGCAACATAAAATTGTGGGTTCCAAAATGTATATGTTTCGGCTTTTCATCTCAAACCACCGTGCTGGCAACCGGATCCTCTCTTCATATGTTGAGGCTGCGGAATATTATCATTTTAGTGGTGATAGTGATGATACCGATCAAAAAAATATCCAAAGATGTCCTCGGCTTTCGTCATGCCCCATCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.36

Weight (kDa)

6.8

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017278)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36951
malus_domestica MD03G1085800.v1.1
prunus_persica Prupe.6G070100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0066391
rosa_laevigata RLG00000035856
rosa_multiflora Rmu_ssc0000249.1_g000010
rosa_roxburghii Rroxscaffold_1G00014760
rosa_rugosa Rorug05G0377900
rosa_samantha Rh5AG436300 Rh5BG452700 Rh5CG475100 Rh5DG467900
rosa_wichuraiana Rw5G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 752
AclWI GGATC 4 cut(s) 226, 519, 721, 734
AcoI YGGCCR 1 cut(s) 368
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 588
AfaI GTAC 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 2 cut(s) 200, 506
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
AluBI AGCT 5 cut(s) 65, 122, 166, 547, 596
AluI AGCT 5 cut(s) 65, 122, 166, 547, 596
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 4 cut(s) 226, 519, 721, 734
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 2 cut(s) 368, 557
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 3 cut(s) 65, 68, 749
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 557, 558
AsuHPI GGTGA 4 cut(s) 23, 50, 413, 785
AvaI CYCGRG 1 cut(s) 560
BaeGI GKGCMC 2 cut(s) 135, 561
BamHI GGATCC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 52, 55, 736
BccI CCATC 3 cut(s) 460, 653, 842
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BclI TGATCA 4 cut(s) 13, 40, 325, 463
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 125, 630
BisI GCNGC 3 cut(s) 66, 69, 750
BlsI GCNGC 3 cut(s) 67, 70, 751
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 557, 558
BmiI GGNNCC 4 cut(s) 558, 559, 673, 728
BmsI GCATC 2 cut(s) 231, 297
BpmI CTGGAG 1 cut(s) 9
BpuEI CTTGAG 3 cut(s) 152, 429, 563
BsaBI GATNNNNATC 2 cut(s) 462, 789
BsaJI CCNNGG 1 cut(s) 815
BsaWI WCCGGW 1 cut(s) 723
Bse118I RCCGGY 1 cut(s) 370
Bse8I GATNNNNATC 2 cut(s) 462, 789
BseDI CCNNGG 1 cut(s) 815
BseJI GATNNNNATC 2 cut(s) 462, 789
BseRI GAGGAG 1 cut(s) 169
BseSI GKGCMC 2 cut(s) 135, 561
BseXI GCAGC 3 cut(s) 52, 55, 736
BshFI GGCC 2 cut(s) 370, 559
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 2 cut(s) 371, 724
BsmAI GTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 657
BsnI GGCC 2 cut(s) 370, 559
BsoBI CYCGRG 1 cut(s) 560
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 2 cut(s) 135, 561
Bsp143I GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
BspACI CCGC 1 cut(s) 752
BspANI GGCC 2 cut(s) 370, 559
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 558, 559, 673, 728
BspPI GGATC 4 cut(s) 226, 519, 721, 734
BsrFI RCCGGY 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
Bst4CI ACNGT 2 cut(s) 438, 713
Bst6I CTCTTC 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 372, 718
BstDEI CTNAG 1 cut(s) 548
BstKTI GATC 9 cut(s) 16, 43, 234, 328, 460, 466, 514, 729, 793
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
BstNSI RCATGY 2 cut(s) 316, 613
BstSLI GKGCMC 2 cut(s) 135, 561
BstV1I GCAGC 3 cut(s) 52, 55, 736
BstX2I RGATCY 2 cut(s) 231, 726
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 2 cut(s) 231, 726
BsuRI GGCC 2 cut(s) 370, 559
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 2 cut(s) 372, 718
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 557, 558
Csp6I GTAC 1 cut(s) 87
CviAII CATG 7 cut(s) 136, 313, 320, 366, 461, 610, 828
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 548
DpnI GATC 9 cut(s) 15, 42, 233, 327, 459, 465, 513, 728, 792
DpnII GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
EaeI YGGCCR 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 739
EarI CTCTTC 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 588
Eco88I CYCGRG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 561
FaeI CATG 7 cut(s) 139, 316, 323, 369, 464, 613, 831
FatI CATG 7 cut(s) 135, 312, 319, 365, 460, 609, 827
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 4 cut(s) 13, 40, 325, 463
Fnu4HI GCNGC 3 cut(s) 66, 69, 750
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 66, 69, 750
FspBI CTAG 2 cut(s) 125, 630
GluI GCNGC 3 cut(s) 66, 69, 750
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 2 cut(s) 370, 559
HapII CCGG 2 cut(s) 371, 724
Hin1II CATG 7 cut(s) 139, 316, 323, 369, 464, 613, 831
HinfI GANTC 2 cut(s) 5, 572
HpaII CCGG 2 cut(s) 371, 724
HphI GGTGA 4 cut(s) 23, 50, 413, 785
Hpy166II GTNNAC 2 cut(s) 87, 482
Hpy188I TCNGA 5 cut(s) 285, 457, 532, 650, 842
Hpy188III TCNNGA 2 cut(s) 26, 461
Hpy8I GTNNAC 2 cut(s) 87, 482
Hpy99I CGWCG 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 438, 713
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 4 cut(s) 71, 96, 116, 655
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 7 cut(s) 139, 316, 323, 369, 464, 613, 831
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
Ksp22I TGATCA 4 cut(s) 13, 40, 325, 463
Kzo9I GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
LpnPI CCDG 7 cut(s) 21, 39, 384, 510, 579, 702, 737
Lsp1109I GCAGC 3 cut(s) 52, 55, 736
LweI GCATC 2 cut(s) 231, 297
MaeI CTAG 2 cut(s) 125, 630
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 1 cut(s) 49
MalI GATC 9 cut(s) 15, 42, 233, 327, 459, 465, 513, 728, 792
MboI GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
MboII GAAGA 2 cut(s) 581, 726
MflI RGATCY 2 cut(s) 231, 726
MhlI GDGCHC 2 cut(s) 135, 561
MluCI AATT 3 cut(s) 31, 410, 663
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 8 cut(s) 122, 190, 259, 327, 586, 739, 740, 825
MroNI GCCGGC 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 3 cut(s) 276, 309, 413
MslI CAYNNNNRTG 3 cut(s) 311, 650, 768
MspI CCGG 2 cut(s) 371, 724
Mva1269I GAATGC 1 cut(s) 657
NaeI GCCGGC 1 cut(s) 372
NdeI CATATG 1 cut(s) 739
NdeII GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 7 cut(s) 139, 316, 323, 369, 464, 613, 831
NlaIV GGNNCC 4 cut(s) 558, 559, 673, 728
NmeAIII GCCGAG 1 cut(s) 796
NspI RCATGY 2 cut(s) 316, 613
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 609
PctI GAATGC 1 cut(s) 657
PdiI GCCGGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 3 cut(s) 67, 70, 751
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 558, 559, 673, 728
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 2 cut(s) 557, 558
PsuI RGATCY 2 cut(s) 231, 726
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 3 cut(s) 311, 650, 768
SaqAI TTAA 3 cut(s) 276, 309, 413
SatI GCNGC 3 cut(s) 66, 69, 750
Sau3AI GATC 9 cut(s) 13, 40, 231, 325, 457, 463, 511, 726, 790
Sau96I GGNCC 2 cut(s) 557, 558
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 135, 561
SfaNI GCATC 2 cut(s) 231, 297
SmiMI CAYNNNNRTG 3 cut(s) 311, 650, 768
SmlI CTYRAG 3 cut(s) 167, 444, 542
SmoI CTYRAG 3 cut(s) 167, 444, 542
Sse9I AATT 3 cut(s) 31, 410, 663
SsiI CCGC 1 cut(s) 752
SspI AATATT 2 cut(s) 142, 758
SspMI CTAG 2 cut(s) 125, 630
TaaI ACNGT 2 cut(s) 438, 713
TaiI ACGT 1 cut(s) 587
TaqI TCGA 1 cut(s) 333
TasI AATT 3 cut(s) 31, 410, 663
TatI WGTACW 1 cut(s) 86
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 3 cut(s) 276, 309, 413
Tru9I TTAA 3 cut(s) 276, 309, 413
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 65, 68, 749
TspDTI ATGAA 3 cut(s) 152, 688, 726
TspRI CASTG 1 cut(s) 441
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 31
XceI RCATGY 2 cut(s) 316, 613
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 125, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.