FvH4_3g37410

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32116622 .. 32121719
5098 bp
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UTR
Exon/CDS
Intron
FvH4_3g37410.t1

Sequence Viewer

Length: 1461 bp
ATGGGTGCCGGATTTTCTCTTTGCTTCCGGCCATCAAATACGATAGCCAATCTCAACGACTCGTCGGAATTAGAGAATATAAGCAAGGAAAGTTACTCGCTGCCTGAGTTCAGCTTGAAACAACTGAAAGCTGCCACGGAGGGATTCTTGCCGGAGAACATTATTTCCGACGACGGGGAGAAAGCTCCAAATGTTGTCTACAGAGGCATGCTCGAAGATGGCCGTTGGATCGCCGTTAAGCGCTTCCAGTACTCGGCTTGGCCTGAATCCGTCCAATTTCTTGCTGAGGCTAGAGCTGTGGGGCAGCTGAGAAACAAACGTTTGGCGAATTTGATAGGGTATTGCTGTGAAGGCAATAATAGATTGCTTGTGGCAGAGTTTATGCCTAATCAAACTCTCTCTAAGCATCTGTTCCATAGGGAGTCCTACCCCATGAAAGGGGCAATGAGGTTGCGAGTGGCTTTGCATCTGGCACAAGCTTTGGTGTATTGCAGCAGCAAAGGGCAGCCATTGTACTATGATCTTAATGCTTCTAAAGTCCTGTTTGATCAGAATGGAAATCCCAGACTGTCCTGCTTTGGCCTTATGAAGAGTAGCAAAGATGGCAAGAGCTACAGCTCCAACCTGGCTTACCCTCCAGAATACACCAGGACAGGAAGAGTGATACCAGAGAGTTTGGTTTACAGCTTTGGGACCTTATTGCTTGATTTGCTCAGCGGCAGGCATACCCACCCAAGCCATGCAGTAGACCTCATATGCGACAAAAGTTTCCTGATGCTGATGGAGTCATGCTTTGTGGATCATTTCTCAAAAGATGATGGAACTGAGCTGTTGCGTTTAGCTTCTCAATGCTTGCAGTTTGATCCTTGTAAGAGACCAAATCCTAAGTCTCTTGTGAATGCCCTCGCTCCTCTTCAGAAAGAGACAGAGGTTCCATCATTCGTCTTGATGGATATTCCGCACAGAAATGTGGCTCCGAAGCACTTGTCACCTCTAGGTGAAGCTTGCTCGAGATTGGATCTTACTGCAATACATAAACAGCTGGAGATGGCTGGATACAAGGCTGATGTTGAGTCTGAGGCTGACAAGGAACCTTCCTTCGATATGTGGACAGATCCAATGCGGGAAGCACTACATTCCAGGAAACAGGGAGATGCTGCATTTAGAGCTAAAGACTTTTGTTCAGCAATAGGTTGTTACACAAAATTCATTAACATTGGGAGCTTGGAATCGCGAACTGTGTTTGTTAGACGTTGCTTGTGTTACTTGATGACTGATAGGGCAGAAGAAGCTCTTAAAGACAGTATGAATGCTCTAGGACTACACCATGTATGGCCGACTGCCTTCTATCTTCAAGCTGCTGCCCTAAAGTTCCTAGGGATGGATAATGATGCGCAGGAAATTCTGAAAGAGGGAGCATCATTGGAAGCCATGAAAATAAAAAATGCTCCAAGTGTATAG

Protein Analysis

487

Amino Acids

54.38

Weight (kDa)

6.89

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 65 - 300 3.3e-19 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 66 - 302 2.5e-21 Protein tyrosine and serine/threonine kinase
TPR_BSK1_C PF25575 334 - 453 9.3e-50 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018010)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37410
rosa_chinensis RchiOBHm_Chr5g0067291 RchiOBHm_Chr5g0067301
rosa_laevigata RLG00000035924
rosa_multiflora Rmu_sc0000015.1_g000009
rosa_roxburghii Rroxscaffold_1G00013830
rosa_rugosa Rorug05G0383800
rosa_samantha Rh5AG443100 Rh5BG460300 Rh5DG475200
rosa_wichuraiana Rw5G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1395
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 2 cut(s) 198, 747
AccII CGCG 1 cut(s) 1234
AciI CCGC 3 cut(s) 717, 959, 1123
AclI AACGTT 1 cut(s) 319
AclWI GGATC 5 cut(s) 236, 807, 857, 1026, 1109
AcoI YGGCCR 3 cut(s) 29, 220, 1334
AcsI RAATTY 3 cut(s) 328, 1205, 1401
AcuI CTGAAG 1 cut(s) 899
AfaI GTAC 2 cut(s) 251, 515
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 5 cut(s) 174, 253, 437, 438, 1381
AgsI TTSAA 2 cut(s) 118, 1355
AjnI CCWGG 3 cut(s) 624, 647, 1139
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
Alw26I GTCTC 3 cut(s) 868, 894, 917
AlwI GGATC 5 cut(s) 236, 807, 857, 1026, 1109
Ama87I CYCGRG 1 cut(s) 1009
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 5 cut(s) 29, 220, 260, 580, 1334
ApeKI GCWGC 9 cut(s) 100, 131, 304, 492, 495, 505, 1157, 1358, 1361
ApoI RAATTY 3 cut(s) 328, 1205, 1401
ArsI GACNNNNNNTTYG 4 cut(s) 872, 904, 971, 1003
AspA2I CCTAGG 1 cut(s) 1375
AspLEI GCGC 2 cut(s) 243, 1396
AspS9I GGNCC 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 981, 1010
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 693
AvrII CCTAGG 1 cut(s) 1375
BanI GGYRCC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 9 cut(s) 87, 118, 316, 504, 507, 517, 1144, 1345, 1348
BccI CCATC 9 cut(s) 40, 212, 596, 775, 812, 943, 943, 1042, 1375
BceAI ACGGC 2 cut(s) 207, 218
BciT130I CCWGG 3 cut(s) 626, 649, 1141
BciVI GTATCC 1 cut(s) 1049
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 868, 894, 917
BfaI CTAG 4 cut(s) 291, 995, 1316, 1376
BfmI CTRYAG 2 cut(s) 199, 613
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 1049
BlnI CCTAGG 1 cut(s) 1375
BlpI GCTNAGC 1 cut(s) 713
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 3 cut(s) 626, 649, 1141
Bme18I GGWCC 1 cut(s) 693
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 693
BmiI GGNNCC 5 cut(s) 7, 694, 933, 975, 1092
BmrFI CCNGG 3 cut(s) 626, 649, 1141
BmsI GCATC 6 cut(s) 415, 475, 765, 1144, 1381, 1427
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 2 cut(s) 621, 1064
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 868
BsaJI CCNNGG 2 cut(s) 135, 1375
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 253, 437, 438, 1381
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 3 cut(s) 626, 649, 1141
BseDI CCNNGG 2 cut(s) 135, 1375
BseGI GGATG 1 cut(s) 1386
BseLI CCNNNNNNNGG 5 cut(s) 174, 253, 437, 438, 1381
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 6 cut(s) 96, 276, 299, 727, 816, 1068
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 900
BseXI GCAGC 9 cut(s) 87, 118, 316, 504, 507, 517, 1144, 1345, 1348
Bsh1236I CGCG 1 cut(s) 1234
BshFI GGCC 5 cut(s) 31, 222, 262, 582, 1336
BshNI GGYRCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 3 cut(s) 9, 28, 152
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 5 cut(s) 174, 253, 437, 438, 1381
BsmAI GTCTC 3 cut(s) 868, 894, 917
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 2 cut(s) 904, 1315
BsnI GGCC 5 cut(s) 31, 222, 262, 582, 1336
Bso31I GGTCTC 1 cut(s) 868
BsoBI CYCGRG 1 cut(s) 1009
Bsp143I GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
Bsp1720I GCTNAGC 1 cut(s) 713
Bsp68I TCGCGA 1 cut(s) 1234
BspACI CCGC 3 cut(s) 717, 959, 1123
BspANI GGCC 5 cut(s) 31, 222, 262, 582, 1336
BspCNI CTCAG 6 cut(s) 97, 277, 300, 726, 817, 1069
BspFNI CGCG 1 cut(s) 1234
BspLI GGNNCC 5 cut(s) 7, 694, 933, 975, 1092
BspPI GGATC 5 cut(s) 236, 807, 857, 1026, 1109
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 450
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 135, 1375
BssMI GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
BssT1I CCWWGG 1 cut(s) 1375
Bst2UI CCWGG 3 cut(s) 626, 649, 1141
Bst4CI ACNGT 3 cut(s) 570, 1240, 1304
Bst6I CTCTTC 3 cut(s) 584, 652, 918
BstC8I GCNNGC 4 cut(s) 209, 722, 854, 1006
BstDEI CTNAG 8 cut(s) 105, 285, 308, 402, 713, 825, 885, 1077
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 1386
BstFNI CGCG 1 cut(s) 1234
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 1396
BstKTI GATC 7 cut(s) 231, 523, 550, 802, 865, 1021, 1117
BstMAI GTCTC 3 cut(s) 868, 894, 917
BstMBI GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 1166, 1289
BstNI CCWGG 3 cut(s) 626, 649, 1141
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 624, 647, 1139
BstSFI CTRYAG 2 cut(s) 199, 613
BstUI CGCG 1 cut(s) 1234
BstV1I GCAGC 9 cut(s) 87, 118, 316, 504, 507, 517, 1144, 1345, 1348
BstX2I RGATCY 2 cut(s) 1018, 1114
BstYI RGATCY 2 cut(s) 1018, 1114
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 31, 222, 262, 582, 1336
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 1386
BtuMI TCGCGA 1 cut(s) 1234
Cac8I GCNNGC 4 cut(s) 209, 722, 854, 1006
CfoI GCGC 2 cut(s) 243, 1396
Cfr13I GGNCC 1 cut(s) 693
Csp6I GTAC 2 cut(s) 250, 514
CviAII CATG 6 cut(s) 208, 433, 740, 789, 1328, 1432
CviQI GTAC 2 cut(s) 250, 514
DdeI CTNAG 8 cut(s) 105, 285, 308, 402, 713, 825, 885, 1077
DpnI GATC 7 cut(s) 230, 522, 549, 801, 864, 1020, 1116
DpnII GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
EaeI YGGCCR 3 cut(s) 29, 220, 1334
Eam1104I CTCTTC 3 cut(s) 584, 652, 918
EarI CTCTTC 3 cut(s) 584, 652, 918
Eco130I CCWWGG 1 cut(s) 1375
Eco31I GGTCTC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 693
Eco47III AGCGCT 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 899
Eco88I CYCGRG 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 693
EcoRII CCWGG 3 cut(s) 624, 647, 1139
EcoT14I CCWWGG 1 cut(s) 1375
ErhI CCWWGG 1 cut(s) 1375
FaeI CATG 6 cut(s) 211, 436, 743, 792, 1331, 1435
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 1 cut(s) 706
FatI CATG 6 cut(s) 207, 432, 739, 788, 1327, 1431
FauI CCCGC 1 cut(s) 1116
FauNDI CATATG 1 cut(s) 755
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 2 cut(s) 198, 747
FokI GGATG 1 cut(s) 1393
FspBI CTAG 4 cut(s) 291, 995, 1316, 1376
FspI TGCGCA 1 cut(s) 1395
GlaI GCGC 2 cut(s) 242, 1395
GsuI CTGGAG 2 cut(s) 621, 1064
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 5 cut(s) 31, 222, 262, 582, 1336
HapII CCGG 3 cut(s) 9, 28, 152
HhaI GCGC 2 cut(s) 243, 1396
Hin1II CATG 6 cut(s) 211, 436, 743, 792, 1331, 1435
Hin6I GCGC 2 cut(s) 241, 1394
HinP1I GCGC 2 cut(s) 241, 1394
HindIII AAGCTT 2 cut(s) 477, 1002
HinfI GANTC 7 cut(s) 59, 144, 266, 422, 785, 1073, 1229
HpaII CCGG 3 cut(s) 9, 28, 152
HphI GGTGA 2 cut(s) 981, 1010
Hpy166II GTNNAC 4 cut(s) 199, 682, 748, 1110
Hpy188I TCNGA 7 cut(s) 67, 169, 552, 918, 978, 1078, 1407
Hpy188III TCNNGA 5 cut(s) 638, 772, 946, 1011, 1233
Hpy8I GTNNAC 4 cut(s) 199, 682, 748, 1110
Hpy99I CGWCG 3 cut(s) 67, 173, 176
HpyAV CCTTC 4 cut(s) 344, 1104, 1108, 1354
HpyCH4III ACNGT 3 cut(s) 570, 1240, 1304
HpyCH4IV ACGT 2 cut(s) 319, 1252
HpyCH4V TGCA 6 cut(s) 466, 492, 743, 856, 1028, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 1166, 1289
HpyF3I CTNAG 8 cut(s) 105, 285, 308, 402, 713, 825, 885, 1077
HpySE526I ACGT 2 cut(s) 319, 1252
Hsp92II CATG 6 cut(s) 211, 436, 743, 792, 1331, 1435
HspAI GCGC 2 cut(s) 241, 1394
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
LmnI GCTCC 7 cut(s) 190, 623, 913, 979, 1221, 1415, 1453
Lsp1109I GCAGC 9 cut(s) 87, 118, 316, 504, 507, 517, 1144, 1345, 1348
LweI GCATC 6 cut(s) 415, 475, 765, 1144, 1381, 1427
MaeI CTAG 4 cut(s) 291, 995, 1316, 1376
MaeII ACGT 2 cut(s) 319, 1252
MaeIII GTNAC 4 cut(s) 92, 987, 1196, 1262
MalI GATC 7 cut(s) 230, 522, 549, 801, 864, 1020, 1116
MboI GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
MboII GAAGA 6 cut(s) 227, 601, 669, 905, 1298, 1343
MflI RGATCY 2 cut(s) 1018, 1114
MluCI AATT 5 cut(s) 68, 275, 328, 1205, 1401
MlyI GAGTC 4 cut(s) 53, 431, 794, 1082
MmeI TCCRAC 4 cut(s) 45, 192, 206, 645
MseI TTAA 4 cut(s) 237, 525, 1212, 1296
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 3 cut(s) 307, 717, 1042
MspI CCGG 3 cut(s) 9, 28, 152
MspR9I CCNGG 3 cut(s) 626, 649, 1141
Mva1269I GAATGC 2 cut(s) 904, 1315
MvaI CCWGG 3 cut(s) 626, 649, 1141
MvnI CGCG 1 cut(s) 1234
MwoI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 1166, 1289
NdeI CATATG 1 cut(s) 755
NdeII GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
NlaIII CATG 6 cut(s) 211, 436, 743, 792, 1331, 1435
NlaIV GGNNCC 5 cut(s) 7, 694, 933, 975, 1092
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 987
NruI TCGCGA 1 cut(s) 1234
NsbI TGCGCA 1 cut(s) 1395
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 1009
PctI GAATGC 2 cut(s) 904, 1315
PfeI GAWTC 3 cut(s) 144, 266, 1229
PfoI TCCNGGA 1 cut(s) 1139
PleI GAGTC 4 cut(s) 53, 430, 793, 1081
PpsI GAGTC 4 cut(s) 53, 430, 793, 1081
PpuMI RGGWCCY 1 cut(s) 693
Psp1406I AACGTT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 624, 647, 1139
PspGI CCWGG 3 cut(s) 624, 647, 1139
PspN4I GGNNCC 5 cut(s) 7, 694, 933, 975, 1092
PspPI GGNCC 1 cut(s) 693
PspPPI RGGWCCY 1 cut(s) 693
PsuI RGATCY 2 cut(s) 1018, 1114
PvuII CAGCTG 2 cut(s) 307, 1042
RruI TCGCGA 1 cut(s) 1234
RsaI GTAC 2 cut(s) 251, 515
RsaNI GTAC 2 cut(s) 250, 514
RseI CAYNNNNRTG 1 cut(s) 966
SaqAI TTAA 4 cut(s) 237, 525, 1212, 1296
Sau3AI GATC 7 cut(s) 228, 520, 547, 799, 862, 1018, 1114
Sau96I GGNCC 1 cut(s) 693
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 4 cut(s) 53, 431, 794, 1082
ScrFI CCNGG 3 cut(s) 626, 649, 1141
SfaNI GCATC 6 cut(s) 415, 475, 765, 1144, 1381, 1427
SfcI CTRYAG 2 cut(s) 199, 613
Sfr274I CTCGAG 1 cut(s) 1009
SinI GGWCC 1 cut(s) 693
SlaI CTCGAG 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 1 cut(s) 1009
SmoI CTYRAG 1 cut(s) 1009
SphI GCATGC 1 cut(s) 211
Sse9I AATT 5 cut(s) 68, 275, 328, 1205, 1401
SsiI CCGC 3 cut(s) 717, 959, 1123
SspMI CTAG 4 cut(s) 291, 995, 1316, 1376
StyD4I CCNGG 3 cut(s) 624, 647, 1139
StyI CCWWGG 1 cut(s) 1375
TaaI ACNGT 3 cut(s) 570, 1240, 1304
TaiI ACGT 2 cut(s) 322, 1255
TaqI TCGA 3 cut(s) 213, 1010, 1101
TasI AATT 5 cut(s) 68, 275, 328, 1205, 1401
TatI WGTACW 2 cut(s) 249, 513
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 3 cut(s) 144, 266, 1229
Tru1I TTAA 4 cut(s) 237, 525, 1212, 1296
Tru9I TTAA 4 cut(s) 237, 525, 1212, 1296
TseFI GTSAC 1 cut(s) 987
TseI GCWGC 9 cut(s) 100, 131, 304, 492, 495, 505, 1157, 1358, 1361
Tsp45I GTSAC 1 cut(s) 987
TspDTI ATGAA 5 cut(s) 449, 602, 1198, 1322, 1448
TspGWI ACGGA 2 cut(s) 152, 259
VpaK11BI GGWCC 1 cut(s) 693
XapI RAATTY 3 cut(s) 328, 1205, 1401
XceI RCATGY 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 1009
XmaJI CCTAGG 1 cut(s) 1375
XmiI GTMKAC 2 cut(s) 198, 747
XspI CTAG 4 cut(s) 291, 995, 1316, 1376
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.