Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018010

Physical Location & Seq

Genomic Coordinates Forward (+)

73552883 .. 73556173

Gene Structure 3291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGTGCCGGATTCTCTCTTTGCTTCCGGCCATCAAATACGATATCCAATCTCAACGACTCGTCGGAATTAGAGAACGTAAGCAAGGAAACTTACCCGCTGCCTGAGTTCAGCTTGAACCAACTTAAAGCTGCCACAGAGGGATTCTTGCCGGAGAACATTGTTTCCGACGACGGGGAGAAAGCTCCAAATGTTGTCTACAGAGGCATGCTCGAAGATGGCCGTTGGATCGCCATTAAGCGCTTCAAGTACTCGGCTTGGCCTGATTCCCTCCAATTTCTTGCTGAGGCTAGAGCTGTTGGGCAGCTGAGATACAAACATTTGGTGAATTTGATAGGGTGTTGCTGTGAAGGCAATGAGAGATTGCTTGTGGCTGAGTTCATGCCTAATCAAACTCTCTCTAAACATCTGTTCCATAGGGAGTCCCAGCCCATGAAAGGGACTATGAGGTTGCGAGTGGCTCTGTATCTGGCACAAGCTTTGGTGTATTGCAGTAGCAAAGGGCGGCCATTGTACCATGATCTTAATGCCTCTAGAGTCCTGTTTGATCAGAATGGAAATCCCAGACTATCCTGCTTTGGCCTTATGAAGAGTAGCAAAGATGGCAAGAGCTACAGCTCCAACCTAGCTTACCCTCCAGAATACACCAGGACAGGAAGAGTTATACCAGAAAGTTTGATTTATAGCTTTGGGACCTTATTGCTTGATCTGCTCAGTAGCAGTCATACCCACCCAAGCCATCGGGTTCCATCATCTGTTTTGATGGATATTCCACATGGAAATGTGCCTCCGAAGCAATTGTCACCTTTAGGTGAAGCTTGCTCAAGATTGGATCTTACTGCAATACATAAAGTACTGGAGATGGCTGGATACAAGGATGATGTTGAATCTGAGGCTGAAGAGGAACCTTCCTTCGATATGTGGACTGATCCAATGCGGGAAGCACTAAATTCCAGGAAGCAGGGAGATACTGCATTTAGAGCTAAAGACTTTGGTACTGCAATAGGTTGTTACACAAAATTCCTTAATAGTGGGAGCTTGGAATCCCGAACTGTGTATGTTAGACGTTGCTTGTGTTACTTGATGACTGACAGGGCAGAAGAAGCTCTTAAAGATAGTATGAATGCCCTAGTACTACACCATTTATGGCCGACTGCCTTCTATCTTCAAGCTGCTGCCCTAAAGATCCTAGGGATGGATAATGATGCAATGGATATTCTGAAAGAAGGTGCATCATTGGAAGCCATGAAAAACAAAAAAGCTCAAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

425

Amino Acids

47.44

Weight (kDa)

6.61

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 248	4.3e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 260	4.8e-20	Protein tyrosine and serine/threonine kinase
TPR_BSK1_C	PF25575	272 - 391	1.3e-52	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018010)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37410
rosa_chinensis	RchiOBHm_Chr5g0067291 RchiOBHm_Chr5g0067301
rosa_laevigata	RLG00000035924
rosa_multiflora	Rmu_sc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_1G00013830
rosa_rugosa	Rorug05G0383800
rosa_samantha	Rh5AG443100 Rh5BG460300 Rh5DG475200
rosa_wichuraiana	Rw5G041410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	98, 505, 937
AclWI	GGATC	4 cut(s)	236, 840, 923, 1180
AcoI	YGGCCR	4 cut(s)	29, 220, 506, 1148
AcsI	RAATTY	3 cut(s)	328, 949, 1019
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	5 cut(s)	251, 515, 855, 997, 1134
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	174, 437, 438, 1195
AgsI	TTSAA	4 cut(s)	118, 247, 887, 1169
AjnI	CCWGG	2 cut(s)	647, 953
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AlwI	GGATC	4 cut(s)	236, 840, 923, 1180
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	6 cut(s)	29, 220, 260, 506, 580, 1148
ApeKI	GCWGC	5 cut(s)	100, 131, 304, 1172, 1175
ApoI	RAATTY	3 cut(s)	328, 949, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
AspA2I	CCTAGG	1 cut(s)	1189
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	3 cut(s)	337, 795, 824
AvaII	GGWCC	1 cut(s)	693
AvrII	CCTAGG	1 cut(s)	1189
BanI	GGYRCC	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	87, 118, 316, 1159, 1162
BccI	CCATC	8 cut(s)	40, 212, 596, 747, 757, 757, 856, 1189
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	2 cut(s)	649, 955
BciVI	GTATCC	1 cut(s)	863
BclI	TGATCA	1 cut(s)	547
BfaI	CTAG	5 cut(s)	291, 534, 626, 1130, 1190
BfmI	CTRYAG	2 cut(s)	199, 613
BfoI	RGCGCY	1 cut(s)	244
BfuI	GTATCC	1 cut(s)	863
BisI	GCNGC	6 cut(s)	101, 132, 305, 506, 1173, 1176
BlnI	CCTAGG	1 cut(s)	1189
BlsI	GCNGC	6 cut(s)	102, 133, 306, 507, 1174, 1177
BmcAI	AGTACT	3 cut(s)	251, 855, 1134
Bme1390I	CCNGG	2 cut(s)	649, 955
Bme18I	GGWCC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	4 cut(s)	7, 694, 747, 906
BmrFI	CCNGG	2 cut(s)	649, 955
BmsI	GCATC	2 cut(s)	1195, 1241
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	2 cut(s)	621, 878
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	808
BsaJI	CCNNGG	1 cut(s)	1189
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 437, 438, 1195
Bse1I	ACTGG	1 cut(s)	861
Bse3DI	GCAATG	2 cut(s)	361, 1215
BseBI	CCWGG	2 cut(s)	649, 955
BseDI	CCNNGG	1 cut(s)	1189
BseGI	GGATG	2 cut(s)	883, 1200
BseLI	CCNNNNNNNGG	4 cut(s)	174, 437, 438, 1195
BseMI	GCAATG	2 cut(s)	361, 1215
BseMII	CTCAG	6 cut(s)	96, 276, 299, 366, 727, 882
BseNI	ACTGG	1 cut(s)	861
BseXI	GCAGC	5 cut(s)	87, 118, 316, 1159, 1162
BseYI	CCCAGC	1 cut(s)	426
BshFI	GGCC	6 cut(s)	31, 222, 262, 508, 582, 1150
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	9, 28, 152
BslFI	GGGAC	3 cut(s)	409, 454, 706
BslI	CCNNNNNNNGG	4 cut(s)	174, 437, 438, 1195
BsmFI	GGGAC	3 cut(s)	409, 454, 706
BsmI	GAATGC	1 cut(s)	1129
BsnI	GGCC	6 cut(s)	31, 222, 262, 508, 582, 1150
Bsp143I	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
BspACI	CCGC	3 cut(s)	98, 505, 937
BspANI	GGCC	6 cut(s)	31, 222, 262, 508, 582, 1150
BspCNI	CTCAG	6 cut(s)	97, 277, 300, 367, 726, 883
BspLI	GGNNCC	4 cut(s)	7, 694, 747, 906
BspPI	GGATC	4 cut(s)	236, 840, 923, 1180
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	361, 1215
BsrI	ACTGG	1 cut(s)	861
BssECI	CCNNGG	1 cut(s)	1189
BssMI	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
BssT1I	CCWWGG	1 cut(s)	1189
Bst2UI	CCWGG	2 cut(s)	649, 955
Bst4CI	ACNGT	1 cut(s)	1054
Bst6I	CTCTTC	3 cut(s)	584, 652, 894
BstC8I	GCNNGC	2 cut(s)	209, 820
BstDEI	CTNAG	6 cut(s)	105, 285, 308, 375, 713, 891
BstF5I	GGATG	2 cut(s)	883, 1200
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	7 cut(s)	231, 523, 550, 709, 835, 931, 1188
BstMBI	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
BstMWI	GCNNNNNNNGC	6 cut(s)	351, 603, 709, 793, 980, 1103
BstNI	CCWGG	2 cut(s)	649, 955
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	647, 953
BstSFI	CTRYAG	2 cut(s)	199, 613
BstV1I	GCAGC	5 cut(s)	87, 118, 316, 1159, 1162
BstX2I	RGATCY	2 cut(s)	832, 1185
BstYI	RGATCY	2 cut(s)	832, 1185
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	6 cut(s)	31, 222, 262, 508, 582, 1150
BtsCI	GGATG	2 cut(s)	883, 1200
Cac8I	GCNNGC	2 cut(s)	209, 820
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	693
Csp6I	GTAC	5 cut(s)	250, 514, 854, 996, 1133
CviAII	CATG	6 cut(s)	208, 382, 433, 518, 776, 1246
CviQI	GTAC	5 cut(s)	250, 514, 854, 996, 1133
DdeI	CTNAG	6 cut(s)	105, 285, 308, 375, 713, 891
DpnI	GATC	7 cut(s)	230, 522, 549, 708, 834, 930, 1187
DpnII	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
EaeI	YGGCCR	4 cut(s)	29, 220, 506, 1148
Eam1104I	CTCTTC	3 cut(s)	584, 652, 894
EarI	CTCTTC	3 cut(s)	584, 652, 894
Eco130I	CCWWGG	1 cut(s)	1189
Eco32I	GATATC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	693
Eco47III	AGCGCT	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	918
EcoO109I	RGGNCCY	1 cut(s)	693
EcoRII	CCWGG	2 cut(s)	647, 953
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	1189
ErhI	CCWWGG	1 cut(s)	1189
FaeI	CATG	6 cut(s)	211, 385, 436, 521, 779, 1249
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	3 cut(s)	409, 454, 706
FatI	CATG	6 cut(s)	207, 381, 432, 517, 775, 1245
FauI	CCCGC	2 cut(s)	105, 930
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	6 cut(s)	101, 132, 305, 506, 1173, 1176
FokI	GGATG	2 cut(s)	890, 1207
Fsp4HI	GCNGC	6 cut(s)	101, 132, 305, 506, 1173, 1176
FspBI	CTAG	5 cut(s)	291, 534, 626, 1130, 1190
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	6 cut(s)	101, 132, 305, 506, 1173, 1176
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	2 cut(s)	621, 878
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	6 cut(s)	31, 222, 262, 508, 582, 1150
HapII	CCGG	3 cut(s)	9, 28, 152
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	211, 385, 436, 521, 779, 1249
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	477, 816
HinfI	GANTC	8 cut(s)	12, 59, 144, 266, 422, 537, 887, 1043
HpaII	CCGG	3 cut(s)	9, 28, 152
HphI	GGTGA	3 cut(s)	337, 795, 824
Hpy166II	GTNNAC	2 cut(s)	199, 924
Hpy188I	TCNGA	6 cut(s)	67, 169, 552, 792, 892, 1221
Hpy188III	TCNNGA	4 cut(s)	534, 638, 825, 1047
Hpy8I	GTNNAC	2 cut(s)	199, 924
Hpy99I	CGWCG	3 cut(s)	67, 173, 176
HpyAV	CCTTC	5 cut(s)	344, 918, 922, 1168, 1220
HpyCH4III	ACNGT	1 cut(s)	1054
HpyCH4IV	ACGT	2 cut(s)	78, 1066
HpyCH4V	TGCA	6 cut(s)	492, 842, 974, 1001, 1208, 1232
HpyF10VI	GCNNNNNNNGC	6 cut(s)	351, 603, 709, 793, 980, 1103
HpyF3I	CTNAG	6 cut(s)	105, 285, 308, 375, 713, 891
HpySE526I	ACGT	2 cut(s)	78, 1066
Hsp92II	CATG	6 cut(s)	211, 385, 436, 521, 779, 1249
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
LmnI	GCTCC	3 cut(s)	190, 623, 1035
Lsp1109I	GCAGC	5 cut(s)	87, 118, 316, 1159, 1162
LweI	GCATC	2 cut(s)	1195, 1241
MaeI	CTAG	5 cut(s)	291, 534, 626, 1130, 1190
MaeII	ACGT	2 cut(s)	78, 1066
MaeIII	GTNAC	3 cut(s)	801, 1010, 1076
MalI	GATC	7 cut(s)	230, 522, 549, 708, 834, 930, 1187
MboI	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
MboII	GAAGA	6 cut(s)	227, 601, 669, 911, 1112, 1157
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	2 cut(s)	832, 1185
MluCI	AATT	7 cut(s)	68, 275, 328, 797, 949, 1019, 1266
MlyI	GAGTC	3 cut(s)	53, 431, 546
MmeI	TCCRAC	4 cut(s)	45, 192, 206, 645
MseI	TTAA	5 cut(s)	126, 237, 525, 1026, 1110
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	2 cut(s)	100, 307
MspI	CCGG	3 cut(s)	9, 28, 152
MspR9I	CCNGG	2 cut(s)	649, 955
MunI	CAATTG	1 cut(s)	797
Mva1269I	GAATGC	1 cut(s)	1129
MvaI	CCWGG	2 cut(s)	649, 955
MwoI	GCNNNNNNNGC	6 cut(s)	351, 603, 709, 793, 980, 1103
NdeII	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
NlaIII	CATG	6 cut(s)	211, 385, 436, 521, 779, 1249
NlaIV	GGNNCC	4 cut(s)	7, 694, 747, 906
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	801
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	1129
PfeI	GAWTC	5 cut(s)	12, 144, 266, 887, 1043
PfoI	TCCNGGA	1 cut(s)	953
PkrI	GCNGC	6 cut(s)	102, 133, 306, 507, 1174, 1177
PleI	GAGTC	3 cut(s)	53, 430, 545
PpsI	GAGTC	3 cut(s)	53, 430, 545
PpuMI	RGGWCCY	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	647, 953
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	647, 953
PspN4I	GGNNCC	4 cut(s)	7, 694, 747, 906
PspPI	GGNCC	1 cut(s)	693
PspPPI	RGGWCCY	1 cut(s)	693
PsuI	RGATCY	2 cut(s)	832, 1185
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	5 cut(s)	251, 515, 855, 997, 1134
RsaNI	GTAC	5 cut(s)	250, 514, 854, 996, 1133
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	5 cut(s)	126, 237, 525, 1026, 1110
SatI	GCNGC	6 cut(s)	101, 132, 305, 506, 1173, 1176
Sau3AI	GATC	7 cut(s)	228, 520, 547, 706, 832, 928, 1185
Sau96I	GGNCC	1 cut(s)	693
ScaI	AGTACT	3 cut(s)	251, 855, 1134
SchI	GAGTC	3 cut(s)	53, 431, 546
ScrFI	CCNGG	2 cut(s)	649, 955
SfaNI	GCATC	2 cut(s)	1195, 1241
SfcI	CTRYAG	2 cut(s)	199, 613
SinI	GGWCC	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	7 cut(s)	68, 275, 328, 797, 949, 1019, 1266
SsiI	CCGC	3 cut(s)	98, 505, 937
SspMI	CTAG	5 cut(s)	291, 534, 626, 1130, 1190
StyD4I	CCNGG	2 cut(s)	647, 953
StyI	CCWWGG	1 cut(s)	1189
TaaI	ACNGT	1 cut(s)	1054
TaiI	ACGT	2 cut(s)	81, 1069
TaqI	TCGA	2 cut(s)	213, 915
TasI	AATT	7 cut(s)	68, 275, 328, 797, 949, 1019, 1266
TatI	WGTACW	3 cut(s)	249, 853, 1132
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	5 cut(s)	12, 144, 266, 887, 1043
Tru1I	TTAA	5 cut(s)	126, 237, 525, 1026, 1110
Tru9I	TTAA	5 cut(s)	126, 237, 525, 1026, 1110
TseFI	GTSAC	1 cut(s)	801
TseI	GCWGC	5 cut(s)	100, 131, 304, 1172, 1175
Tsp45I	GTSAC	1 cut(s)	801
TspDTI	ATGAA	5 cut(s)	370, 449, 602, 1136, 1262
VpaK11BI	GGWCC	1 cut(s)	693
XapI	RAATTY	3 cut(s)	328, 949, 1019
XbaI	TCTAGA	1 cut(s)	533
XceI	RCATGY	1 cut(s)	211
XmaJI	CCTAGG	1 cut(s)	1189
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	5 cut(s)	291, 534, 626, 1130, 1190
ZrmI	AGTACT	3 cut(s)	251, 855, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.