Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018010

Physical Location & Seq

Genomic Coordinates Forward (+)

52093560 .. 52096913

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0383800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAGTGATTATAACTTGCAACTCTTAGGCAACGTATTTGAAGTCAATGATAGCCAAGTTGTTAGCCAACACACACAAAATGACGATGAAGGTGAAGAAATTCTTATGAGGATGATTAGGGGTGATCATAACATGACACCAAACCATGCCGATTGCGTGGTGAATGAGATGAATGCATCTAGAGGATCTGTTAATAGAAATATCGGAGATATGAGATCAAAAACTGGACATGGGACCAGGAAAAGGGCTGGAAAAATCAAGAAACACAGGGGTAAAAATAAGGCTAACTTTGGTCCTTATGGCCCTGAGAATATGTTGTTTAACAAGTTTGGGCAGCCAGTTGCACCAGCTGAAACTGTTGCAAGGTTCTCGAGGTATGTAGGATCACTTGCAAGAGAACCTTCTATATTTTCAATCAATGTACCTGACTTCAGGAATTTTAAAGGGACCGGAAGGGTTGAAAGTGCATGGGCAGAAATAAAGCCAAAAATAGATTGGTCTGAGCCACAAACCTTGGCAATTATGAAAAGAATTCAGAAGGTAGTGAAGAAGAAATTAAATGCGCGCTGGAGAAAACACAAGCACAGACTTTATGTTGACTACTATATGGAAGACAACGGACATGCTGAACGATTTGTATGTCCAGATGGGGATGTGAATCAACTACAATGGCGTGCATTGGAACTTGCAAACGAAGGGAAAGAAATAGATCGCTGCACATTCTGGAGATTAATTCACAGCAAACCAAAGAAAGACGGTATTGGGACCGTGCCAATTAATGACGAAGCAGAAAAAATCTTTTTGGAATTGGATAAGCTTGAGCAAAGGGAGTGCTTAAATGGTAGGGAACTCACTATAGACTTATTGAATGAATTGTTTTGTGAGCAATTTGGACCAGAAACATATAATGCAGTTCGAGGGTATGGACTGGGAGTAGAGTGGGTTGATGTTCCTAGAATACAAACTGCAAAGCCAGCAGTTTCTTGCGATGTAGCGTCACTTCAGTCTGAACTTGAAGCCTCACTTGCTGAGATCACGAGGTTGACAGAGGTAGCAGCCAAAAAGGATGAGCAATTGCAAGCTGTCCAAACTCAATTGAATAGCATTGAAACTCGTATTGGCAATCCCTTGCATAGTATAATAAGTGCTGGACCTGATACCATTAAGAAGCTAATAGCAGCACTTTCTGATATCGCAGAGAAGCAACCTCAATCGATCCAAGAAATGCAATCAACTCCAATGGAAGGGTATGTGACTTTACTTGGACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

423

Amino Acids

47.81

Weight (kDa)

6.85

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018010)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37410
rosa_chinensis	RchiOBHm_Chr5g0067291 RchiOBHm_Chr5g0067301
rosa_laevigata	RLG00000035924
rosa_multiflora	Rmu_sc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_1G00013830
rosa_rugosa	Rorug05G0383800
rosa_samantha	Rh5AG443100 Rh5BG460300 Rh5DG475200
rosa_wichuraiana	Rw5G041410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccII	CGCG	1 cut(s)	565
AclWI	GGATC	3 cut(s)	193, 391, 1210
AcsI	RAATTY	3 cut(s)	99, 436, 531
AcuI	CTGAAG	2 cut(s)	415, 986
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	243, 1244
AgsI	TTSAA	7 cut(s)	41, 414, 461, 868, 1016, 1099, 1109
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	1101, 1133
AluBI	AGCT	4 cut(s)	350, 817, 1082, 1171
AluI	AGCT	4 cut(s)	350, 817, 1082, 1171
AlwI	GGATC	3 cut(s)	193, 391, 1210
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	334, 714, 1055, 1178
ApoI	RAATTY	3 cut(s)	99, 436, 531
AseI	ATTAAT	2 cut(s)	731, 777
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	565, 567
AspS9I	GGNCC	7 cut(s)	234, 293, 302, 447, 765, 893, 1151
AsuHPI	GGTGA	3 cut(s)	104, 134, 172
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	6 cut(s)	234, 293, 447, 765, 893, 1151
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	346, 701, 1067, 1190
BccI	CCATC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	1 cut(s)	238
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	3 cut(s)	180, 954, 1270
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	4 cut(s)	335, 715, 1056, 1179
BlsI	GCNGC	4 cut(s)	336, 716, 1057, 1180
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	6 cut(s)	234, 293, 447, 765, 893, 1151
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	7 cut(s)	234, 293, 302, 447, 765, 893, 1151
BmiI	GGNNCC	3 cut(s)	235, 448, 766
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	938
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	938
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	2 cut(s)	589, 745
BpuEI	CTTGAG	1 cut(s)	839
Bsa29I	ATCGAT	1 cut(s)	1214
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 1244
Bse1I	ACTGG	3 cut(s)	229, 338, 933
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	1214
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	3 cut(s)	117, 658, 1072
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	243, 1244
BseMII	CTCAG	3 cut(s)	297, 492, 1020
BseNI	ACTGG	3 cut(s)	229, 338, 933
BsePI	GCGCGC	1 cut(s)	563
BseXI	GCAGC	4 cut(s)	346, 701, 1067, 1190
BsgI	GTGCAG	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	1214
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	3 cut(s)	247, 460, 778
BslI	CCNNNNNNNGG	2 cut(s)	243, 1244
BsmFI	GGGAC	3 cut(s)	247, 460, 778
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	370
Bsp143I	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	298, 493, 1021
BspDI	ATCGAT	1 cut(s)	1214
BspFNI	CGCG	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	235, 448, 766
BspPI	GGATC	3 cut(s)	193, 391, 1210
BsrI	ACTGG	3 cut(s)	229, 338, 933
BssECI	CCNNGG	1 cut(s)	513
BssHII	GCGCGC	1 cut(s)	563
BssMI	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
BssSI	CACGAG	1 cut(s)	1036
BssT1I	CCWWGG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	1036
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	3 cut(s)	358, 758, 769
BstC8I	GCNNGC	4 cut(s)	565, 675, 975, 1080
BstDEI	CTNAG	4 cut(s)	25, 306, 501, 1029
BstF5I	GGATG	3 cut(s)	117, 658, 1072
BstFNI	CGCG	1 cut(s)	565
BstHHI	GCGC	2 cut(s)	565, 567
BstKTI	GATC	7 cut(s)	127, 188, 218, 386, 712, 1035, 1218
BstMBI	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
BstMWI	GCNNNNNNNGC	2 cut(s)	974, 1025
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	565
BstV1I	GCAGC	4 cut(s)	346, 701, 1067, 1190
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	1214
BsuRI	GGCC	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	1214
BtgZI	GCGATG	1 cut(s)	1002
BtsCI	GGATG	3 cut(s)	117, 658, 1072
Cac8I	GCNNGC	4 cut(s)	565, 675, 975, 1080
CfoI	GCGC	2 cut(s)	565, 567
Cfr13I	GGNCC	7 cut(s)	234, 293, 302, 447, 765, 893, 1151
ClaI	ATCGAT	1 cut(s)	1214
CseI	GACGC	1 cut(s)	984
Csp6I	GTAC	1 cut(s)	422
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	5 cut(s)	133, 146, 230, 468, 623
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	4 cut(s)	25, 306, 501, 1029
DpnI	GATC	7 cut(s)	126, 187, 217, 385, 711, 1034, 1217
DpnII	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
DraI	TTTAAA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	1192
Eco47I	GGWCC	6 cut(s)	234, 293, 447, 765, 893, 1151
Eco57I	CTGAAG	2 cut(s)	415, 986
Eco88I	CYCGRG	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	1192
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	5 cut(s)	136, 149, 233, 471, 626
FalI	AAGNNNNNCTT	8 cut(s)	87, 119, 272, 304, 385, 417, 1008, 1040
FaqI	GGGAC	3 cut(s)	247, 460, 778
FatI	CATG	5 cut(s)	132, 145, 229, 467, 622
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	335, 715, 1056, 1179
FokI	GGATG	3 cut(s)	124, 665, 1079
Fsp4HI	GCNGC	4 cut(s)	335, 715, 1056, 1179
FspBI	CTAG	3 cut(s)	180, 954, 1270
GlaI	GCGC	2 cut(s)	564, 566
GluI	GCNGC	4 cut(s)	335, 715, 1056, 1179
GsuI	CTGGAG	2 cut(s)	589, 745
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	450
HgaI	GACGC	1 cut(s)	984
HhaI	GCGC	2 cut(s)	565, 567
Hin1II	CATG	5 cut(s)	136, 149, 233, 471, 626
Hin6I	GCGC	2 cut(s)	563, 565
HinP1I	GCGC	2 cut(s)	563, 565
HincII	GTYRAC	2 cut(s)	598, 1044
HindII	GTYRAC	2 cut(s)	598, 1044
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	3 cut(s)	104, 134, 172
Hpy166II	GTNNAC	2 cut(s)	598, 1044
Hpy188I	TCNGA	5 cut(s)	206, 502, 537, 1009, 1189
Hpy188III	TCNNGA	7 cut(s)	180, 259, 370, 433, 644, 724, 1036
Hpy8I	GTNNAC	2 cut(s)	598, 1044
HpyAV	CCTTC	6 cut(s)	83, 411, 447, 532, 689, 1238
HpyCH4III	ACNGT	3 cut(s)	358, 758, 769
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	974, 1025
HpyF3I	CTNAG	4 cut(s)	25, 306, 501, 1029
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	136, 149, 233, 471, 626
HspAI	GCGC	2 cut(s)	563, 565
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
Lsp1109I	GCAGC	4 cut(s)	346, 701, 1067, 1190
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	3 cut(s)	180, 954, 1270
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	996, 1252
MalI	GATC	7 cut(s)	126, 187, 217, 385, 711, 1034, 1217
MboI	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
MboII	GAAGA	4 cut(s)	107, 559, 562, 623
MfeI	CAATTG	2 cut(s)	1073, 1094
MflI	RGATCY	1 cut(s)	185
MnlI	CCTC	8 cut(s)	102, 176, 366, 911, 1030, 1032, 1042, 1218
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	8 cut(s)	192, 321, 441, 557, 731, 777, 836, 1164
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	2 cut(s)	1073, 1094
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	974, 1025
NdeII	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
NlaIII	CATG	5 cut(s)	136, 149, 233, 471, 626
NlaIV	GGNNCC	3 cut(s)	235, 448, 766
NmuCI	GTSAC	2 cut(s)	996, 1252
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	370
PauI	GCGCGC	1 cut(s)	563
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	336, 716, 1057, 1180
PshBI	ATTAAT	2 cut(s)	731, 777
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	235, 448, 766
PspPI	GGNCC	7 cut(s)	234, 293, 302, 447, 765, 893, 1151
PsuI	RGATCY	1 cut(s)	185
PteI	GCGCGC	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	8 cut(s)	192, 321, 441, 557, 731, 777, 836, 1164
SatI	GCNGC	4 cut(s)	335, 715, 1056, 1179
Sau3AI	GATC	7 cut(s)	124, 185, 215, 383, 709, 1032, 1215
Sau96I	GGNCC	7 cut(s)	234, 293, 302, 447, 765, 893, 1151
ScrFI	CCNGG	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	855
Sfr274I	CTCGAG	1 cut(s)	370
SinI	GGWCC	6 cut(s)	234, 293, 447, 765, 893, 1151
SlaI	CTCGAG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	370, 818
SmoI	CTYRAG	2 cut(s)	370, 818
SspMI	CTAG	3 cut(s)	180, 954, 1270
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	358, 758, 769
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	371, 916, 1214
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	8 cut(s)	192, 321, 441, 557, 731, 777, 836, 1164
Tru9I	TTAA	8 cut(s)	192, 321, 441, 557, 731, 777, 836, 1164
TseFI	GTSAC	2 cut(s)	996, 1252
TseI	GCWGC	4 cut(s)	334, 714, 1055, 1178
Tsp45I	GTSAC	2 cut(s)	996, 1252
TspDTI	ATGAA	4 cut(s)	102, 185, 539, 885
TspGWI	ACGGA	1 cut(s)	633
VpaK11BI	GGWCC	6 cut(s)	234, 293, 447, 765, 893, 1151
VspI	ATTAAT	2 cut(s)	731, 777
XapI	RAATTY	3 cut(s)	99, 436, 531
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	3 cut(s)	180, 954, 1270
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.