Rw5G041410

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
72974536 .. 72977819
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041410.1

Sequence Viewer

Length: 1419 bp
ATGGGTGCCGGATTCTCTCTTTGCTTCCGGCCATCAAATACGATATCCAATCTCAACGACTCGTCGGAATTAGAGAACGTAAGCAAGGAAACTTACTCGCTGCCTGAGTTCAGCTTGAACCAACTTAAAGCTGCCACAGAGGGATTCTTGCCGGAGAACATTGTTTCCGACGACGGGGAGAAAGCTCCAAATGTTGTCTACAGAGGCATGCTCAAAGATGGCCGTTGGATCGCCATTAAGCGCTTCAAGTACTCGGCTTGGCCTGATTCCCTCCAATTTCTTGCTGAGGCTAGAGCTGTGGGGCAGCTGAGAAACAAACGTTTGGCGAATTTGATAGGGTGTTGCTGTGAAGGCAATGAGAGATTGCTTGTGGCTGAGTTCATGCCTAATCAAACTCTCTCTAAACATCTGTTCCATAGGGAGTCCCAGCCCATGAAAGGGACTATGAGGTTGCGAGTGGCTCTGTATCTGGCACAAGCTTTGGTGTATTGCAGTAGCAAAGGGCGGCCATTGTACCATGATCTTAATGCCTCTAGAGTCCTGTTTGATCAGAAGGGAAATCCCAGACTATCCTGCTTTGGCCTTATGAAGAGTAGCAAAGATGGCAAGAGCTACAGCTCCAACCTAGCTTACCCTCCAGAATACACCAGGACAGGAAGAGTTATACCAGAAAGTTTGATTTATAGCTTTGGGACCTTATTGCTTGATCTGCTCAGTAGCAGTCATACCCACCCAAGCCATGCAGTAGATCTCATACACGACAAAGGTTTCCTGATGCAATTGGACTCATGCTTGGTGGATCATTTCTCAAAAGATGATGGAAATGAGCTGTTACCAAATCCTAAGTCTCTTGTGAATACCCTCATTCCTCTTCAGAAAGAAACAGAGGTTCCATCATTTGTTTTGATGGATATTCCACATGGAAATGTGCCTCCAAAGCAATTGTCACCTTTAGGTGAAGCTTGCTCAAGATTGGATCTTACTGCAATACATAAAGTACTGGAGATGGCTGGATACAGGGATGATGTTGAATCTGAGGCTGAAAAGGAGCCTTCTTTCGATATGTGGACTGATCCAATGCGGGAAGCACTAAATTCCAGGAAGCAGGGAGATGCTGCATTTAGAACTAAAGACTTTGGTACTGCAATAGGTTGTTACACAAAATTCATTAATAGTGGGAGCTTGGAATCCCGAACCGTGTATGTTAGACGTTGCTTGTGTTACTTGATGACTGACAAGGCAGAAGAAGCTCTTAAAGATAGTATGAATGCCCTAGTACTACACCATTTATGGCCGACTGCCTTCTATCTTCAAGCTGCTGCCCTAAAGATCCTAGGGATGGATAATGATGCAAAGGATATTCTGAAAGAAGGTGCATCATTGGAAGCCTTGAAAAACAAAAAAGCTCAAATTGTTTAA

Protein Analysis

472

Amino Acids

52.75

Weight (kDa)

6.87

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 65 - 251 6.2e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 66 - 243 2.7e-18 Protein tyrosine and serine/threonine kinase
TPR_BSK1_C PF25575 320 - 439 1e-52 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018010)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37410
rosa_chinensis RchiOBHm_Chr5g0067291 RchiOBHm_Chr5g0067301
rosa_laevigata RLG00000035924
rosa_multiflora Rmu_sc0000015.1_g000009
rosa_roxburghii Rroxscaffold_1G00013830
rosa_rugosa Rorug05G0383800
rosa_samantha Rh5AG443100 Rh5BG460300 Rh5DG475200
rosa_wichuraiana Rw5G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 505, 1081
AclI AACGTT 1 cut(s) 319
AclWI GGATC 5 cut(s) 236, 807, 984, 1067, 1324
AcoI YGGCCR 4 cut(s) 29, 220, 506, 1292
AcsI RAATTY 3 cut(s) 328, 1093, 1163
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 5 cut(s) 251, 515, 999, 1141, 1278
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 4 cut(s) 174, 437, 438, 1339
AgsI TTSAA 5 cut(s) 118, 247, 1031, 1313, 1393
AjnI CCWGG 2 cut(s) 647, 1097
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
Alw26I GTCTC 1 cut(s) 852
AlwI GGATC 5 cut(s) 236, 807, 984, 1067, 1324
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 6 cut(s) 29, 220, 260, 506, 580, 1292
ApeKI GCWGC 6 cut(s) 100, 131, 304, 1115, 1316, 1319
ApoI RAATTY 3 cut(s) 328, 1093, 1163
ArsI GACNNNNNNTTYG 4 cut(s) 830, 862, 929, 961
AseI ATTAAT 1 cut(s) 1170
AspA2I CCTAGG 1 cut(s) 1333
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 939, 968
AvaII GGWCC 1 cut(s) 693
AvrII CCTAGG 1 cut(s) 1333
BanI GGYRCC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 6 cut(s) 87, 118, 316, 1102, 1303, 1306
BccI CCATC 8 cut(s) 40, 212, 596, 812, 901, 901, 1000, 1333
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 2 cut(s) 649, 1099
BciVI GTATCC 1 cut(s) 1007
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 852
BfaI CTAG 5 cut(s) 291, 534, 626, 1274, 1334
BfmI CTRYAG 2 cut(s) 199, 613
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 1007
BglII AGATCT 1 cut(s) 748
BisI GCNGC 7 cut(s) 101, 132, 305, 506, 1116, 1317, 1320
BlnI CCTAGG 1 cut(s) 1333
BlsI GCNGC 7 cut(s) 102, 133, 306, 507, 1117, 1318, 1321
BmcAI AGTACT 3 cut(s) 251, 999, 1278
Bme1390I CCNGG 2 cut(s) 649, 1099
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 1 cut(s) 693
BmiI GGNNCC 4 cut(s) 7, 694, 891, 1050
BmrFI CCNGG 2 cut(s) 649, 1099
BmsI GCATC 4 cut(s) 765, 1102, 1339, 1385
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 2 cut(s) 621, 1022
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 952
BsaJI CCNNGG 1 cut(s) 1333
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 437, 438, 1339
Bse1I ACTGG 1 cut(s) 1005
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 2 cut(s) 649, 1099
BseDI CCNNGG 1 cut(s) 1333
BseGI GGATG 2 cut(s) 1027, 1344
BseLI CCNNNNNNNGG 4 cut(s) 174, 437, 438, 1339
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 6 cut(s) 96, 276, 299, 366, 727, 1026
BseNI ACTGG 1 cut(s) 1005
BseXI GCAGC 6 cut(s) 87, 118, 316, 1102, 1303, 1306
BseYI CCCAGC 1 cut(s) 426
BshFI GGCC 6 cut(s) 31, 222, 262, 508, 582, 1294
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 9, 28, 152
BslFI GGGAC 3 cut(s) 409, 454, 706
BslI CCNNNNNNNGG 4 cut(s) 174, 437, 438, 1339
BsmAI GTCTC 1 cut(s) 852
BsmFI GGGAC 3 cut(s) 409, 454, 706
BsmI GAATGC 1 cut(s) 1273
BsnI GGCC 6 cut(s) 31, 222, 262, 508, 582, 1294
Bsp143I GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
BspACI CCGC 2 cut(s) 505, 1081
BspANI GGCC 6 cut(s) 31, 222, 262, 508, 582, 1294
BspCNI CTCAG 6 cut(s) 97, 277, 300, 367, 726, 1027
BspLI GGNNCC 4 cut(s) 7, 694, 891, 1050
BspPI GGATC 5 cut(s) 236, 807, 984, 1067, 1324
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 1005
BssECI CCNNGG 1 cut(s) 1333
BssMI GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
BssT1I CCWWGG 1 cut(s) 1333
Bst2UI CCWGG 2 cut(s) 649, 1099
Bst4CI ACNGT 1 cut(s) 1198
Bst6I CTCTTC 3 cut(s) 584, 652, 876
BstC8I GCNNGC 2 cut(s) 209, 964
BstDEI CTNAG 7 cut(s) 105, 285, 308, 375, 713, 843, 1035
BstF5I GGATG 2 cut(s) 1027, 1344
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 9 cut(s) 231, 523, 550, 709, 751, 802, 979, 1075, 1332
BstMAI GTCTC 1 cut(s) 852
BstMBI GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
BstMWI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 937, 1247
BstNI CCWGG 2 cut(s) 649, 1099
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 647, 1097
BstSFI CTRYAG 2 cut(s) 199, 613
BstV1I GCAGC 6 cut(s) 87, 118, 316, 1102, 1303, 1306
BstX2I RGATCY 3 cut(s) 748, 976, 1329
BstYI RGATCY 3 cut(s) 748, 976, 1329
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 6 cut(s) 31, 222, 262, 508, 582, 1294
BtsCI GGATG 2 cut(s) 1027, 1344
Cac8I GCNNGC 2 cut(s) 209, 964
CfoI GCGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 693
Csp6I GTAC 5 cut(s) 250, 514, 998, 1140, 1277
CviAII CATG 7 cut(s) 208, 382, 433, 518, 740, 789, 920
CviQI GTAC 5 cut(s) 250, 514, 998, 1140, 1277
DdeI CTNAG 7 cut(s) 105, 285, 308, 375, 713, 843, 1035
DpnI GATC 9 cut(s) 230, 522, 549, 708, 750, 801, 978, 1074, 1331
DpnII GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
EaeI YGGCCR 4 cut(s) 29, 220, 506, 1292
Eam1104I CTCTTC 3 cut(s) 584, 652, 876
EarI CTCTTC 3 cut(s) 584, 652, 876
Eco130I CCWWGG 1 cut(s) 1333
Eco32I GATATC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 693
Eco47III AGCGCT 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 857
EcoO109I RGGNCCY 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 647, 1097
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 1333
ErhI CCWWGG 1 cut(s) 1333
FaeI CATG 7 cut(s) 211, 385, 436, 521, 743, 792, 923
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 3 cut(s) 409, 454, 706
FatI CATG 7 cut(s) 207, 381, 432, 517, 739, 788, 919
FauI CCCGC 1 cut(s) 1074
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 7 cut(s) 101, 132, 305, 506, 1116, 1317, 1320
FokI GGATG 2 cut(s) 1034, 1351
Fsp4HI GCNGC 7 cut(s) 101, 132, 305, 506, 1116, 1317, 1320
FspBI CTAG 5 cut(s) 291, 534, 626, 1274, 1334
GlaI GCGC 1 cut(s) 242
GluI GCNGC 7 cut(s) 101, 132, 305, 506, 1116, 1317, 1320
GsaI CCCAGC 1 cut(s) 430
GsuI CTGGAG 2 cut(s) 621, 1022
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 6 cut(s) 31, 222, 262, 508, 582, 1294
HapII CCGG 3 cut(s) 9, 28, 152
HhaI GCGC 1 cut(s) 243
Hin1II CATG 7 cut(s) 211, 385, 436, 521, 743, 792, 923
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 477, 960
HinfI GANTC 9 cut(s) 12, 59, 144, 266, 422, 537, 785, 1031, 1187
HpaII CCGG 3 cut(s) 9, 28, 152
HphI GGTGA 2 cut(s) 939, 968
Hpy166II GTNNAC 2 cut(s) 199, 1068
Hpy188I TCNGA 6 cut(s) 67, 169, 552, 876, 1036, 1365
Hpy188III TCNNGA 5 cut(s) 534, 638, 772, 969, 1191
Hpy8I GTNNAC 2 cut(s) 199, 1068
Hpy99I CGWCG 3 cut(s) 67, 173, 176
HpyAV CCTTC 5 cut(s) 344, 547, 1062, 1312, 1364
HpyCH4III ACNGT 1 cut(s) 1198
HpyCH4IV ACGT 3 cut(s) 78, 319, 1210
HpyCH4V TGCA 8 cut(s) 492, 743, 778, 986, 1118, 1145, 1352, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 937, 1247
HpyF3I CTNAG 7 cut(s) 105, 285, 308, 375, 713, 843, 1035
HpySE526I ACGT 3 cut(s) 78, 319, 1210
Hsp92II CATG 7 cut(s) 211, 385, 436, 521, 743, 792, 923
HspAI GCGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
LmnI GCTCC 4 cut(s) 190, 623, 1048, 1179
Lsp1109I GCAGC 6 cut(s) 87, 118, 316, 1102, 1303, 1306
LweI GCATC 4 cut(s) 765, 1102, 1339, 1385
MaeI CTAG 5 cut(s) 291, 534, 626, 1274, 1334
MaeII ACGT 3 cut(s) 78, 319, 1210
MaeIII GTNAC 4 cut(s) 831, 945, 1154, 1220
MalI GATC 9 cut(s) 230, 522, 549, 708, 750, 801, 978, 1074, 1331
MboI GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
MboII GAAGA 5 cut(s) 601, 669, 863, 1256, 1301
MfeI CAATTG 2 cut(s) 779, 941
MflI RGATCY 3 cut(s) 748, 976, 1329
MluCI AATT 8 cut(s) 68, 275, 328, 779, 941, 1093, 1163, 1410
MlyI GAGTC 4 cut(s) 53, 431, 546, 779
MmeI TCCRAC 4 cut(s) 45, 192, 206, 645
MseI TTAA 6 cut(s) 126, 237, 525, 1170, 1254, 1417
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 3 cut(s) 9, 28, 152
MspR9I CCNGG 2 cut(s) 649, 1099
MunI CAATTG 2 cut(s) 779, 941
Mva1269I GAATGC 1 cut(s) 1273
MvaI CCWGG 2 cut(s) 649, 1099
MwoI GCNNNNNNNGC 5 cut(s) 351, 603, 709, 937, 1247
NdeII GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
NlaIII CATG 7 cut(s) 211, 385, 436, 521, 743, 792, 923
NlaIV GGNNCC 4 cut(s) 7, 694, 891, 1050
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 945
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PctI GAATGC 1 cut(s) 1273
PfeI GAWTC 5 cut(s) 12, 144, 266, 1031, 1187
PfoI TCCNGGA 1 cut(s) 1097
PkrI GCNGC 7 cut(s) 102, 133, 306, 507, 1117, 1318, 1321
PleI GAGTC 4 cut(s) 53, 430, 545, 779
PpsI GAGTC 4 cut(s) 53, 430, 545, 779
PpuMI RGGWCCY 1 cut(s) 693
PshBI ATTAAT 1 cut(s) 1170
Psp1406I AACGTT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 647, 1097
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 2 cut(s) 647, 1097
PspN4I GGNNCC 4 cut(s) 7, 694, 891, 1050
PspPI GGNCC 1 cut(s) 693
PspPPI RGGWCCY 1 cut(s) 693
PsuI RGATCY 3 cut(s) 748, 976, 1329
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 5 cut(s) 251, 515, 999, 1141, 1278
RsaNI GTAC 5 cut(s) 250, 514, 998, 1140, 1277
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 6 cut(s) 126, 237, 525, 1170, 1254, 1417
SatI GCNGC 7 cut(s) 101, 132, 305, 506, 1116, 1317, 1320
Sau3AI GATC 9 cut(s) 228, 520, 547, 706, 748, 799, 976, 1072, 1329
Sau96I GGNCC 1 cut(s) 693
ScaI AGTACT 3 cut(s) 251, 999, 1278
SchI GAGTC 4 cut(s) 53, 431, 546, 779
ScrFI CCNGG 2 cut(s) 649, 1099
SfaNI GCATC 4 cut(s) 765, 1102, 1339, 1385
SfcI CTRYAG 2 cut(s) 199, 613
SinI GGWCC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SphI GCATGC 1 cut(s) 211
Sse9I AATT 8 cut(s) 68, 275, 328, 779, 941, 1093, 1163, 1410
SsiI CCGC 2 cut(s) 505, 1081
SspMI CTAG 5 cut(s) 291, 534, 626, 1274, 1334
StyD4I CCNGG 2 cut(s) 647, 1097
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 1 cut(s) 1198
TaiI ACGT 3 cut(s) 81, 322, 1213
TaqI TCGA 1 cut(s) 1059
TasI AATT 8 cut(s) 68, 275, 328, 779, 941, 1093, 1163, 1410
TatI WGTACW 3 cut(s) 249, 997, 1276
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 5 cut(s) 12, 144, 266, 1031, 1187
Tru1I TTAA 6 cut(s) 126, 237, 525, 1170, 1254, 1417
Tru9I TTAA 6 cut(s) 126, 237, 525, 1170, 1254, 1417
TseFI GTSAC 1 cut(s) 945
TseI GCWGC 6 cut(s) 100, 131, 304, 1115, 1316, 1319
Tsp45I GTSAC 1 cut(s) 945
TspDTI ATGAA 5 cut(s) 370, 449, 602, 1156, 1280
VpaK11BI GGWCC 1 cut(s) 693
VspI ATTAAT 1 cut(s) 1170
XapI RAATTY 3 cut(s) 328, 1093, 1163
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 1333
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 5 cut(s) 291, 534, 626, 1274, 1334
ZrmI AGTACT 3 cut(s) 251, 999, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.