Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0020312

Physical Location & Seq

Genomic Coordinates Reverse (-)

32350186 .. 32352819

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGATTCTTCATCATCTTCTTCTTCTTTAGATTTCTGCTTCTTCTGGTTCTGAATGCATCAGTGGAATCTACATCAAACTGTAACAGTAGAGACCACGAACAAGTCTCCAAGGCCTTCAAATCAGTCCAAAGCTTCAATCTTTCTTGGTTCCAAAACCGAAGGACTCCCAACTGCTCAAATCCACCCATCACGGAAATCAACCTCCATTCTAGAAACCTCAGCGGCATAGTTTCATGGAAGTACCTCAGAAACATGTCACATCTTCAAGACCTTGATCTGTCTAACAACTCTCTCAAAGGCTCCGTCCCAGGTTGGTTCTGGTCCCTTCCAACATTACTCCAAGTCGACCTCTCCAACAACAACCTCGGTGGCAGCTTCGGGTTCGAAAGCAATGTTTCACTTTCCTTGGTGCAAAAACTCAACCTCTCCAGTAACAGGTTCACCAACTCTGTCCTGCTTTCCGGTTTCCCCCACCTCAAAATCCTAGACCTTTCTCACAACAACTTGAGAGCTCTCCCTTCTGGCTTTGCCAACCTCACTAATCTCCAACACCTCGACATTTCTAGCTGCAAAATCTCCGGCAGCTCCAAACCCATCTCGGTTCTTCGCACATTGACCTACCTAGATGTCTCCAACAACTCCATGACCGGTTCTTTCCCTTCGGATTTTCCCCCAATTAGTCCCCTTAAGTTCTTGAACATTTCGTTCAATAATTTCACAGGCGTAGTCGGCTCAGAAAAGTACCACAAATTTGGCAAAGCAGCTTTCTTTCATGCTGGGAAGGATTTAAATCTTACATTTTTCAATGCTTCCAATTTCAAATCCACACCAAAACCACATTTTAAATCCCCAATTCAAAAACCTAAACCCCTCCCAAGACCCATAACTCTTCAAAAACCCAAATCTTCAAAACCAAAAAGAAGTCTCATCATCATCATCATCAGCCTATCTTGTGCCTCCACATTTGTGCTTGCTTTCCTAGGCATCTGCATAGCTTGCAGATACAGAAGAAAGCAATTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

10.24

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	64 - 123	4.8e-10	Leucine rich repeat
LRR_8	PF13855	138 - 193	1.4e-08	Leucine rich repeat
LRR_14	PF23598	156 - 216	4.9e-06	Leucine-rich repeat region
LRR_4	PF12799	158 - 194	2.5e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37760
malus_domestica	MD09G1116000.v1.1
rosa_laevigata	RLG00000009836 RLG00000032588
rosa_multiflora	Rmu_co7997308.1_g000001 Rmu_sc0008509.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	752
AfaI	GTAC	2 cut(s)	245, 746
AfiI	CCNNNNNNNGG	1 cut(s)	438
AflII	CTTAAG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	255
AgeI	ACCGGT	1 cut(s)	650
AjnI	CCWGG	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	968
AluBI	AGCT	7 cut(s)	135, 378, 515, 570, 588, 767, 998
AluI	AGCT	7 cut(s)	135, 378, 515, 570, 588, 767, 998
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	4 cut(s)	87, 112, 637, 932
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	4 cut(s)	375, 570, 585, 764
ApoI	RAATTY	1 cut(s)	752
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AsiGI	ACCGGT	1 cut(s)	650
AspA2I	CCTAGG	1 cut(s)	982
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	324
AvrII	CCTAGG	1 cut(s)	982
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	4 cut(s)	387, 557, 597, 776
BccI	CCATC	2 cut(s)	197, 605
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	4 cut(s)	87, 112, 637, 932
BfaI	CTAG	5 cut(s)	213, 488, 567, 626, 983
BfrI	CTTAAG	1 cut(s)	689
BisI	GCNGC	5 cut(s)	226, 376, 571, 586, 765
BlnI	CCTAGG	1 cut(s)	982
BlsI	GCNGC	5 cut(s)	227, 377, 572, 587, 766
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	3 cut(s)	152, 304, 326
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	68, 996
BpmI	CTGGAG	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	529
BsaBI	GATNNNNATC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	5 cut(s)	111, 310, 367, 408, 982
BsaWI	WCCGGW	2 cut(s)	464, 650
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	5 cut(s)	111, 310, 367, 408, 982
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	235, 262, 750
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	387, 557, 597, 776
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	517
BsiSI	CCGG	3 cut(s)	465, 582, 651
BslFI	GGGAC	3 cut(s)	293, 310, 669
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	4 cut(s)	87, 112, 637, 932
BsmFI	GGGAC	3 cut(s)	293, 310, 669
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	3 cut(s)	234, 261, 749
BspLI	GGNNCC	3 cut(s)	152, 304, 326
BspT104I	TTCGAA	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	5 cut(s)	111, 310, 367, 408, 982
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	3 cut(s)	111, 408, 982
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	83, 89
Bst6I	CTCTTC	1 cut(s)	897
BstAFI	CTTAAG	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	999
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	975, 1000
BstDEI	CTNAG	4 cut(s)	221, 248, 736, 1026
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	4 cut(s)	87, 112, 637, 932
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	732, 999
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	387, 557, 597, 776
BstXI	CCANNNNNNTGG	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	975, 1000
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	244, 745
CspAI	ACCGGT	1 cut(s)	650
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	4 cut(s)	237, 256, 646, 776
CviQI	GTAC	2 cut(s)	244, 745
DdeI	CTNAG	4 cut(s)	221, 248, 736, 1026
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	2 cut(s)	792, 847
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	515
Eco130I	CCWWGG	3 cut(s)	111, 408, 982
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	3 cut(s)	111, 408, 982
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	3 cut(s)	111, 408, 982
FaeI	CATG	4 cut(s)	240, 259, 649, 779
FaiI	YATR	7 cut(s)	230, 238, 257, 647, 777, 887, 995
FaqI	GGGAC	3 cut(s)	293, 310, 669
FatI	CATG	4 cut(s)	236, 255, 645, 775
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	226, 376, 571, 586, 765
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	5 cut(s)	226, 376, 571, 586, 765
FspBI	CTAG	5 cut(s)	213, 488, 567, 626, 983
GluI	GCNGC	5 cut(s)	226, 376, 571, 586, 765
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	3 cut(s)	465, 582, 651
Hin1II	CATG	4 cut(s)	240, 259, 649, 779
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	3 cut(s)	6, 68, 166
HpaII	CCGG	3 cut(s)	465, 582, 651
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	349, 444
Hpy188I	TCNGA	4 cut(s)	54, 251, 667, 739
Hpy188III	TCNNGA	3 cut(s)	213, 269, 697
Hpy8I	GTNNAC	2 cut(s)	349, 444
HpyAV	CCTTC	6 cut(s)	127, 156, 338, 531, 672, 778
HpyCH4III	ACNGT	2 cut(s)	83, 89
HpyCH4V	TGCA	5 cut(s)	59, 415, 573, 993, 1002
HpyF10VI	GCNNNNNNNGC	2 cut(s)	732, 999
HpyF3I	CTNAG	4 cut(s)	221, 248, 736, 1026
Hsp92II	CATG	4 cut(s)	240, 259, 649, 779
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	308, 593
Lsp1109I	GCAGC	4 cut(s)	387, 557, 597, 776
LweI	GCATC	2 cut(s)	68, 996
MaeI	CTAG	5 cut(s)	213, 488, 567, 626, 983
MaeIII	GTNAC	3 cut(s)	83, 258, 434
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	9 cut(s)	10, 13, 16, 35, 257, 599, 884, 900, 1023
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	6 cut(s)	678, 715, 752, 817, 855, 1019
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	4 cut(s)	356, 381, 574, 660
Mph1103I	ATGCAT	1 cut(s)	61
MseI	TTAA	3 cut(s)	690, 791, 846
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	3 cut(s)	465, 582, 651
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	732, 999
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	240, 259, 649, 779
NlaIV	GGNNCC	3 cut(s)	152, 304, 326
NmuCI	GTSAC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	61
NspI	RCATGY	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	968
PceI	AGGCCT	1 cut(s)	116
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	6, 68
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	5 cut(s)	227, 377, 572, 587, 766
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	152, 304, 326
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	2 cut(s)	245, 746
RsaNI	GTAC	2 cut(s)	244, 745
RseI	CAYNNNNRTG	1 cut(s)	968
SacI	GAGCTC	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	690, 791, 846
SatI	GCNGC	5 cut(s)	226, 376, 571, 586, 765
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	68, 996
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	1 cut(s)	324
SmiI	ATTTAAAT	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	2 cut(s)	508, 689
SmoI	CTYRAG	2 cut(s)	508, 689
Sse9I	AATT	6 cut(s)	678, 715, 752, 817, 855, 1019
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	5 cut(s)	213, 488, 567, 626, 983
SstI	GAGCTC	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	3 cut(s)	111, 408, 982
SwaI	ATTTAAAT	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	83, 89
TaqI	TCGA	3 cut(s)	348, 387, 558
TasI	AATT	6 cut(s)	678, 715, 752, 817, 855, 1019
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	6, 68
Tru1I	TTAA	3 cut(s)	690, 791, 846
Tru9I	TTAA	3 cut(s)	690, 791, 846
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	4 cut(s)	375, 570, 585, 764
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	225, 764
TspGWI	ACGGA	2 cut(s)	209, 295
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XmaJI	CCTAGG	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	5 cut(s)	213, 488, 567, 626, 983
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.