Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0020312

Physical Location & Seq

Genomic Coordinates Forward (+)

8917938 .. 8918243

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1116000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGTTGCGACTACCTTGACGACCCCCCGAGAGAGTTGAAAAGAGGACCCATTTCACGCAGATCGCAGGAAGCTTTTACGTTCTCGAATCTGAGTCATTCCGACGCCAAAGAGTTTCCACTTTCTTCGAGCTTGAATGGCCTAACGGGGTTGCAGCAGCTCGAGCTCCAAGCGAACCTGCTCAGCGGCGAGTTTCCCGAGTTGGGTTCTCTTCATAACCTCAGCTATTTAGACGTCATCAACAACGCCATCTCTGGAGGTGTCCCATTAAATTTCCCGGCCTCTCTGCTTCAAATCTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

102

Amino Acids

11.02

Weight (kDa)

4.71

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37760
malus_domestica	MD09G1116000.v1.1
rosa_laevigata	RLG00000009836 RLG00000032588
rosa_multiflora	Rmu_co7997308.1_g000001 Rmu_sc0008509.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	186
AciI	CCGC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	105, 234
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	40, 136, 293
AluBI	AGCT	5 cut(s)	74, 132, 160, 166, 225
AluI	AGCT	5 cut(s)	74, 132, 160, 166, 225
Alw21I	GWGCWC	1 cut(s)	168
Ama87I	CYCGRG	3 cut(s)	28, 161, 197
AoxI	GGCC	2 cut(s)	139, 279
ApeKI	GCWGC	2 cut(s)	154, 157
ApoI	RAATTY	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	278
AvaI	CYCGRG	3 cut(s)	28, 161, 197
AvaII	GGWCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	166, 169
BccI	CCATC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	155, 158, 187
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	3 cut(s)	156, 159, 188
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	3 cut(s)	28, 161, 197
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	278
BsaHI	GRCGYC	2 cut(s)	105, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	83, 196, 235
BseXI	GCAGC	2 cut(s)	166, 169
BshFI	GGCC	2 cut(s)	141, 281
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	3 cut(s)	28, 161, 197
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	141, 281
BsoBI	CYCGRG	3 cut(s)	28, 161, 197
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	62
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	141, 281
BspCNI	CTCAG	3 cut(s)	84, 195, 234
BspLI	GGNNCC	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	186
BssMI	GATC	1 cut(s)	62
BssNI	GRCGYC	2 cut(s)	105, 234
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	2 cut(s)	105, 234
BstDEI	CTNAG	3 cut(s)	92, 182, 221
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 163
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	166, 169
BsuRI	GGCC	2 cut(s)	141, 281
BveI	ACCTGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	74, 132, 141, 160, 166, 225, 281
CviKI_1	RGCY	7 cut(s)	74, 132, 141, 160, 166, 225, 281
DdeI	CTNAG	3 cut(s)	92, 182, 221
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	166
Eco88I	CYCGRG	3 cut(s)	28, 161, 197
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	216, 302
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	155, 158, 187
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	155, 158, 187
GluI	GCNGC	3 cut(s)	155, 158, 187
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	141, 281
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	105, 234
Hin1II	CATG	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	88, 94
HpaII	CCGG	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	93, 103
Hpy188III	TCNNGA	3 cut(s)	85, 197, 255
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	80, 234
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 163
HpyF3I	CTNAG	3 cut(s)	92, 182, 221
HpySE526I	ACGT	2 cut(s)	80, 234
Hsp92I	GRCGYC	2 cut(s)	105, 234
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	4 cut(s)	53, 191, 240, 291
Lsp1109I	GCAGC	2 cut(s)	166, 169
MaeII	ACGT	2 cut(s)	80, 234
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	117, 203
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	38, 230, 251, 292
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	138, 163
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	156, 159, 188
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	3 cut(s)	155, 158, 187
Sau3AI	GATC	1 cut(s)	62
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	276
TaiI	ACGT	2 cut(s)	83, 237
TaqI	TCGA	3 cut(s)	86, 128, 162
TasI	AATT	1 cut(s)	271
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TseI	GCWGC	2 cut(s)	154, 157
TspDTI	ATGAA	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.