Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0020312

Physical Location & Seq

Genomic Coordinates Forward (+)

58700565 .. 58701743

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGTTTCTGCAAGTTAGGGATCTATCAAAGAATCAACTGACTGGCTCATTACCAGACTTGGGGAGCTTGCGAAACCTTCGGTATCTATATCTACAGTACAACTTGCTGGAAGGCGCTATACCACCAACCTTGGGTTCACTAGTGAATCTTCGGCAACTGGATATTTCTGAGAACCAGCTCACTGGTCCGCTTCCCAAAACACTTGGAAATTTGAAATCCCTCAGCGGCTTCTGGGCCATAGCCAATTCCTTGAATGATAAATTTCCGGACACTTATGGGAACCTTACGAGTCTAAAATATTTTTCAATATCCGGGAATTATATCTCTGGTCCATTCCCAGTTGACATCATAAAGAACTGGACTAATATTGAAACTCTGTCACTCGTGGGAAACAATTTCAAAGGAAATTTGGCTAAAGAAGTATTCAATTTGCCAGAACTTCGGTATCTTGACCTGGAATATGCTACTTTCGAGTTACCATCAGAGATTATGAATAACAAATATGTTTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.28

Weight (kDa)

5.44

Isoelectric Point (pI)

26.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 106	1.4e-10	Leucine-rich repeat region
LRR_8	PF13855	25 - 75	6.3e-06	Leucine rich repeat
LRR_4	PF12799	26 - 62	1.2e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37760
malus_domestica	MD09G1116000.v1.1
rosa_laevigata	RLG00000009836 RLG00000032588
rosa_multiflora	Rmu_co7997308.1_g000001 Rmu_sc0008509.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	2 cut(s)	191, 228
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	211, 263, 409
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	62, 134
AgsI	TTSAA	6 cut(s)	217, 256, 309, 374, 403, 430
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	2 cut(s)	121, 153
AluBI	AGCT	2 cut(s)	69, 181
AluI	AGCT	2 cut(s)	69, 181
AlwI	GGATC	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	3 cut(s)	211, 263, 409
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	188, 237, 332
AsuC2I	CCSGG	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	188, 332
BaeI	ACNNNNGTAYC	2 cut(s)	431, 464
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BauI	CACGAG	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	316
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	316, 458
Bme18I	GGWCC	2 cut(s)	188, 332
BmgT120I	GGNCC	3 cut(s)	188, 237, 332
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	316, 458
BmrI	ACTGGG	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 134
Bse1I	ACTGG	5 cut(s)	49, 165, 190, 341, 365
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	62, 134
BseMII	CTCAG	2 cut(s)	162, 238
BseNI	ACTGG	5 cut(s)	49, 165, 190, 341, 365
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	269, 315
BslI	CCNNNNNNNGG	2 cut(s)	62, 134
BsnI	GGCC	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	191, 228
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	163, 237
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	30
BsrI	ACTGG	5 cut(s)	49, 165, 190, 341, 365
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	171, 224
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	314, 456
BstSFI	CTRYAG	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	188, 237, 332
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviJI	RGCY	7 cut(s)	48, 69, 181, 231, 239, 245, 416
CviKI_1	RGCY	7 cut(s)	48, 69, 181, 231, 239, 245, 416
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	171, 224
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	188, 332
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaiI	YATR	9 cut(s)	91, 122, 242, 279, 324, 353, 465, 494, 507
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	269, 315
HhaI	GCGC	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	34, 148, 292
HpaII	CCGG	2 cut(s)	269, 315
Hpy166II	GTNNAC	2 cut(s)	140, 346
Hpy188I	TCNGA	2 cut(s)	172, 487
Hpy188III	TCNNGA	2 cut(s)	269, 452
Hpy8I	GTNNAC	2 cut(s)	140, 346
HpyAV	CCTTC	2 cut(s)	89, 107
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	171, 224
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	381, 477
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	7 cut(s)	211, 247, 263, 319, 397, 409, 430
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	268
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	269, 315
MspR9I	CCNGG	2 cut(s)	316, 458
MvaI	CCWGG	1 cut(s)	458
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	34, 148
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	188, 237, 332
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	3 cut(s)	188, 237, 332
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	316, 458
SetI	ASST	6 cut(s)	71, 81, 134, 183, 288, 459
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	188, 332
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	7 cut(s)	211, 247, 263, 319, 397, 409, 430
SsiI	CCGC	2 cut(s)	191, 228
SspI	AATATT	2 cut(s)	302, 370
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	314, 456
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	474
TasI	AATT	7 cut(s)	211, 247, 263, 319, 397, 409, 430
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	34, 148
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	188, 332
XapI	RAATTY	3 cut(s)	211, 263, 409
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.