Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008509.1

Orthogroup ID

OG0020312

Physical Location & Seq

Genomic Coordinates Forward (+)

116556 .. 117098

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008509.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgtcggtgacaaggaggagactctgggccggagagctcaggtggaggtggacgaagtactggttagagccggtggaggagagaggagcagtgatgatccgggtattgaattataatctgggaaagaaacagcatctcttaaaagtaaaacacgcaaatccttcttggttccaaaatcaaactcccaactgctcaaatccacccatcatagaaatcaagctccattctagaaaccttagcagcatagtctcatggaagtaccacagaaacctcgatctgtctaataattctctcaaaggctttgtcccatgttggttcttgtctcatccaaccttagtcgaagtcaatctctccaaaaacaagttcggcggcagcttcgggtttgataacggttcggtttcctcagtccagaagctatctctccagcaacaagttcaccaactctattctgctttctggtttcccacacctcaaaatcctcaacctttctcacaacaatttgggtgctctcccttctatcttgccaacctcactaatatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009625 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.95

Weight (kDa)

10.02

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37760
malus_domestica	MD09G1116000.v1.1
rosa_laevigata	RLG00000009836 RLG00000032588
rosa_multiflora	Rmu_co7997308.1_g000001 Rmu_sc0008509.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	91
AfaI	GTAC	2 cut(s)	59, 260
AgsI	TTSAA	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	4 cut(s)	37, 220, 375, 415
AluI	AGCT	4 cut(s)	37, 220, 375, 415
Alw21I	GWGCWC	2 cut(s)	39, 509
Alw26I	GTCTC	3 cut(s)	13, 253, 327
AlwI	GGATC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	240, 372
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	19, 428
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	2 cut(s)	39, 509
BbvI	GCAGC	2 cut(s)	252, 384
BccI	CCATC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	13, 253, 327
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	241, 370, 373
BlsI	GCNGC	3 cut(s)	242, 371, 374
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	2 cut(s)	38, 236
BpuMI	CCSGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	52, 417
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	3 cut(s)	31, 92, 99
BseXI	GCAGC	2 cut(s)	252, 384
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	39, 509
BsiSI	CCGG	3 cut(s)	30, 71, 100
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	13, 253, 327
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	39, 509
Bsp143I	GATC	2 cut(s)	96, 274
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	51, 416
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	2 cut(s)	96, 274
Bst4CI	ACNGT	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	38, 236, 334, 403
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	99, 277
BstMAI	GTCTC	3 cut(s)	13, 253, 327
BstMBI	GATC	2 cut(s)	96, 274
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	252, 384
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	58, 259
CviAII	CATG	2 cut(s)	252, 309
CviJI	RGCY	7 cut(s)	29, 37, 70, 220, 300, 375, 415
CviKI_1	RGCY	7 cut(s)	29, 37, 70, 220, 300, 375, 415
CviQI	GTAC	2 cut(s)	58, 259
DdeI	CTNAG	4 cut(s)	38, 236, 334, 403
DpnI	GATC	2 cut(s)	98, 276
DpnII	GATC	2 cut(s)	96, 274
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	2 cut(s)	255, 312
FaiI	YATR	5 cut(s)	114, 209, 245, 253, 310
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	251, 308
Fnu4HI	GCNGC	3 cut(s)	241, 370, 373
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	3 cut(s)	241, 370, 373
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	3 cut(s)	241, 370, 373
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	30, 71, 100
Hin1II	CATG	2 cut(s)	255, 312
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	30, 71, 100
HphI	GGTGA	2 cut(s)	19, 428
Hpy166II	GTNNAC	2 cut(s)	51, 436
Hpy188III	TCNNGA	2 cut(s)	228, 409
Hpy8I	GTNNAC	2 cut(s)	51, 436
HpyAV	CCTTC	2 cut(s)	171, 523
HpyCH4III	ACNGT	1 cut(s)	392
HpyF3I	CTNAG	4 cut(s)	38, 236, 334, 403
Hsp92II	CATG	2 cut(s)	255, 312
Kzo9I	GATC	2 cut(s)	96, 274
LmnI	GCTCC	2 cut(s)	86, 225
Lsp1109I	GCAGC	2 cut(s)	252, 384
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	98, 276
MboI	GATC	2 cut(s)	96, 274
MhlI	GDGCHC	2 cut(s)	39, 509
MluCI	AATT	3 cut(s)	109, 286, 497
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	9 cut(s)	9, 39, 70, 77, 281, 412, 480, 489, 539
MseI	TTAA	1 cut(s)	140
MspI	CCGG	3 cut(s)	30, 71, 100
MspR9I	CCNGG	1 cut(s)	101
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	96, 274
NlaIII	CATG	2 cut(s)	255, 312
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	242, 371, 374
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	27
RsaI	GTAC	2 cut(s)	59, 260
RsaNI	GTAC	2 cut(s)	58, 259
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	3 cut(s)	241, 370, 373
Sau3AI	GATC	2 cut(s)	96, 274
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	39, 509
SfaNI	GCATC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	109, 286, 497
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	273, 339
TasI	AATT	3 cut(s)	109, 286, 497
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	240, 372
Tsp45I	GTSAC	1 cut(s)	7
TspRI	CASTG	1 cut(s)	96
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	1 cut(s)	228
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.