FvH4_3g37940

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018012
Physical Location & Seq
Reverse (-)
32490273 .. 32491705
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37940.t1

Sequence Viewer

Length: 483 bp
ATGGATGAGAATATAGAGACGCAGGTCAAGGAGTCTCTGCAGCAGCTGCCGACGACCCAGCAAGAGTCGGATACCCTGTCGCGACACGAAGACGTGTTCAACATCTATGATTATGTCGCTGTTACTGGCATCCGAGTTGACCGAGTCGAACCCGGACTCGTCGTCTCTACTTTCAAGGTCCCTCCCCGCCTCACCGACAGAGCTGGAAATTTGGCCAATGGTGCAATTGCGAACATTGTTGATATAGTAGCTCACTCCCCAATTTACGTCGTGGGCCAACCTGCTAATGTTTCAGTAGACATTTCCATCTCCTATGTGTCAACTGCAAAGGTCAATGATGAGTTAGAGATCACCTCAAGGTGGTTAGGACAAAGAGGACGTTATTCTGCAATACTTGTGTGCCTGAAAAACAAAGCAACTGGGGAGATCATTGCGGAAGGTCGGCATTCAATGTTTCTTTCAAAAGTTGTTCCCAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

161

Amino Acids

17.61

Weight (kDa)

5.6

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37940
rosa_chinensis RchiOBHm_Chr5g0068371
rosa_laevigata RLG00000035970
rosa_multiflora Rmu_sc0001418.1_g000001
rosa_roxburghii Rroxscaffold_1G00012410 Rroxscaffold_1G00013140
rosa_rugosa Rorug05G0389300
rosa_samantha Rh5AG448000 Rh5BG466000 Rh5DG479600
rosa_wichuraiana Rw5G041820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 13, 289
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 82
AciI CCGC 2 cut(s) 187, 434
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 360
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 4 cut(s) 100, 175, 450, 462
AhdI GACNNNNNGTC 1 cut(s) 161
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 4 cut(s) 46, 203, 251, 478
AluI AGCT 4 cut(s) 46, 203, 251, 478
Alw26I GTCTC 3 cut(s) 11, 39, 169
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 2 cut(s) 213, 274
ApeKI GCWGC 3 cut(s) 40, 43, 46
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 178, 274
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 184, 343
AvaII GGWCC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 33, 52, 55
BccI CCATC 1 cut(s) 314
BciVI GTATCC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 11, 39, 169
BfmI CTRYAG 1 cut(s) 38
BfuAI ACCTGC 2 cut(s) 13, 289
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 3 cut(s) 41, 44, 47
BlsI GCNGC 3 cut(s) 42, 45, 48
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 178
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 178, 274
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 429
BoxI GACNNNNGTC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 338, 370
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 130, 424
Bse3DI GCAATG 1 cut(s) 429
BseGI GGATG 2 cut(s) 10, 129
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 130, 424
BseXI GCAGC 3 cut(s) 33, 52, 55
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 215, 276
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 3 cut(s) 11, 39, 169
BsmBI CGTCTC 2 cut(s) 11, 169
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 215, 276
Bsp143I GATC 2 cut(s) 348, 426
Bsp68I TCGCGA 1 cut(s) 82
BspACI CCGC 2 cut(s) 187, 434
BspANI GGCC 2 cut(s) 215, 276
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 2 cut(s) 13, 289
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 2 cut(s) 130, 424
BssMI GATC 2 cut(s) 348, 426
BstAPI GCANNNNNTGC 1 cut(s) 46
BstF5I GGATG 2 cut(s) 10, 129
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 2 cut(s) 351, 429
BstMAI GTCTC 3 cut(s) 11, 39, 169
BstMBI GATC 2 cut(s) 348, 426
BstMWI GCNNNNNNNGC 2 cut(s) 46, 221
BstPAI GACNNNNGTC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 38
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 33, 52, 55
BstV2I GAAGAC 1 cut(s) 96
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 215, 276
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 10, 129
BtuMI TCGCGA 1 cut(s) 82
BveI ACCTGC 2 cut(s) 13, 289
CaiI CAGNNNCTG 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 178, 274
CseI GACGC 1 cut(s) 28
CviJI RGCY 6 cut(s) 46, 203, 215, 251, 276, 478
CviKI_1 RGCY 6 cut(s) 46, 203, 215, 251, 276, 478
DpnI GATC 2 cut(s) 350, 428
DpnII GATC 2 cut(s) 348, 426
DriI GACNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 178
Esp3I CGTCTC 2 cut(s) 11, 169
FaiI YATR 5 cut(s) 14, 108, 114, 245, 315
FaqI GGGAC 1 cut(s) 164
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 3 cut(s) 41, 44, 47
FokI GGATG 2 cut(s) 17, 116
Fsp4HI GCNGC 3 cut(s) 41, 44, 47
GluI GCNGC 3 cut(s) 41, 44, 47
GsaI CCCAGC 1 cut(s) 61
HaeIII GGCC 2 cut(s) 215, 276
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 28
HincII GTYRAC 2 cut(s) 139, 321
HindII GTYRAC 2 cut(s) 139, 321
HinfI GANTC 4 cut(s) 32, 65, 144, 156
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 184, 343
Hpy166II GTNNAC 3 cut(s) 139, 298, 321
Hpy188I TCNGA 3 cut(s) 70, 134, 482
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 3 cut(s) 139, 298, 321
Hpy99I CGWCG 3 cut(s) 55, 164, 272
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 3 cut(s) 93, 267, 379
HpyCH4V TGCA 4 cut(s) 40, 224, 326, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 221
HpySE526I ACGT 3 cut(s) 93, 267, 379
Kzo9I GATC 2 cut(s) 348, 426
LpnPI CCDG 9 cut(s) 8, 71, 89, 111, 166, 189, 294, 405, 416
Lsp1109I GCAGC 3 cut(s) 33, 52, 55
LweI GCATC 1 cut(s) 138
MaeII ACGT 3 cut(s) 93, 267, 379
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 350, 428
MboI GATC 2 cut(s) 348, 426
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 208, 225, 261
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 4 cut(s) 41, 74, 150, 153
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 4 cut(s) 192, 200, 364, 368
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 46, 221
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 348, 426
NlaIV GGNNCC 1 cut(s) 180
NruI TCGCGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 445
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 42, 45, 48
PleI GAGTC 4 cut(s) 40, 73, 150, 152
PpsI GAGTC 4 cut(s) 40, 73, 150, 152
PpuMI RGGWCCY 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 178, 274
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 46
RruI TCGCGA 1 cut(s) 82
SatI GCNGC 3 cut(s) 41, 44, 47
Sau3AI GATC 2 cut(s) 348, 426
Sau96I GGNCC 2 cut(s) 178, 274
SchI GAGTC 4 cut(s) 41, 74, 150, 153
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 3 cut(s) 208, 225, 261
SsiI CCGC 2 cut(s) 187, 434
StyD4I CCNGG 1 cut(s) 151
TaiI ACGT 3 cut(s) 96, 270, 382
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 156
TasI AATT 3 cut(s) 208, 225, 261
TseI GCWGC 3 cut(s) 40, 43, 46
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.