Rorug05G0389300

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018012
Physical Location & Seq
Reverse (-)
52965941 .. 52966707
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0389300.1

Sequence Viewer

Length: 366 bp
ATGGGAGAGTTCAAACACTTGGTGATAGTTAAGTTCAAGGCAGATGTGGTGGTGGAGGAGATCCTCACAGGGCTGGAGAAGTTGGTTGCCGAGATTGATGCTGTTAAGTCCTATGAATGGGGACAGGACTTGGAGAGCCAGGAGATGCTGACACAAGGTTTCACTCATGCCATCTTGATGACATTCGACAAGAAGGAAGATTACACTCTGTTTCTCAGCCACCCTAAACATGCAGAATTTTCTGGTACATTTTCGACTGTTATAGAAAAGATTGTGCTGCTTGATTTCCCAGCTACTCTTGTCAAGCCTCCATCACCACCACCACCACCACCTCCACCAGCAGCAGAAGTTAAAGAAGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

4.8

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 5 - 97 4.8e-21 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37940
rosa_chinensis RchiOBHm_Chr5g0068371
rosa_laevigata RLG00000035970
rosa_multiflora Rmu_sc0001418.1_g000001
rosa_roxburghii Rroxscaffold_1G00012410 Rroxscaffold_1G00013140
rosa_rugosa Rorug05G0389300
rosa_samantha Rh5AG448000 Rh5BG466000 Rh5DG479600
rosa_wichuraiana Rw5G041820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 13, 37
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 277, 341
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 34, 306
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BbvI GCAGC 2 cut(s) 264, 353
BccI CCATC 2 cut(s) 179, 319
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 140
BisI GCNGC 2 cut(s) 278, 342
BlsI GCNGC 2 cut(s) 279, 343
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 88, 135
BpmI CTGGAG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 264, 353
BseYI CCCAGC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 228
BspPI GGATC 1 cut(s) 55
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 264, 353
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 167, 230
CviJI RGCY 5 cut(s) 73, 138, 219, 293, 307
CviKI_1 RGCY 5 cut(s) 73, 138, 219, 293, 307
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 170, 233
FaiI YATR 4 cut(s) 114, 168, 231, 263
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 166, 229
Fnu4HI GCNGC 2 cut(s) 278, 342
Fsp4HI GCNGC 2 cut(s) 278, 342
GluI GCNGC 2 cut(s) 278, 342
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 95
Hin1II CATG 2 cut(s) 170, 233
HphI GGTGA 2 cut(s) 34, 306
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 2 cut(s) 170, 233
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 54, 59, 110, 125, 152, 228, 303, 351
Lsp1109I GCAGC 2 cut(s) 264, 353
LweI GCATC 2 cut(s) 88, 135
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 60
MluCI AATT 1 cut(s) 236
MnlI CCTC 5 cut(s) 49, 74, 318, 342, 352
MseI TTAA 4 cut(s) 30, 105, 351, 364
MslI CAYNNNNRTG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 170, 233
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 233
PkrI GCNGC 2 cut(s) 279, 343
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 4 cut(s) 30, 105, 351, 364
SatI GCNGC 2 cut(s) 278, 342
Sau3AI GATC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 160, 295, 334, 363
SfaNI GCATC 2 cut(s) 88, 135
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 186, 254
TasI AATT 1 cut(s) 236
Tru1I TTAA 4 cut(s) 30, 105, 351, 364
Tru9I TTAA 4 cut(s) 30, 105, 351, 364
TseI GCWGC 2 cut(s) 277, 341
TspDTI ATGAA 1 cut(s) 129
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.