Rroxscaffold_1G00012410

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018012
Physical Location & Seq
Forward (+)
15272876 .. 15279378
6503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00012410.1

Sequence Viewer

Length: 975 bp
ATGTATCCGAAAATGGAGACGCGGGTCAACCAGTCTCTGCAGCAGCTGCTGACGACCCAACAAGAGTCGACGGAGGCCGTGTCGCGACTCGACATTGAAGCTCAGCGACTCGCAGACGAGTCAAGCCTCTACGATTATTTCGCTGCTACGGGAATTCGAGTGGACCGAGTCGAACCCGGACTCGTCGTCTCTTCTTTCAAGGTCCCTCCCCGACTCACAGACAGAGCTGGAAACTTTGCTAATGGTGCAATTGCAAACCTTGTTGATATAGTAGCGCACTCTCCAATTTATGTTGTGGGTCAACCTGCTAATGTTTCAGTAGACATCTCCATCTCGTATTTGTCAACTGCAAAGGCCCATGATGAGTTAGAGATCACCTCAAAGAGGTTAGGACAAAGAGGACGTTATACTGGAATACTTGTGTGCCTGAGAAACAAAGCGACTGGGGAGATCATTGCTGAAGGTCGGCATTCAATGTTTCTTTCAAAAAATCAAGAGTATTGGTGGCTTGTAGCTCAAGATATTGAGATTGATTCGAAATCGGCTCAAACGGAGCCGGGTCATCCGCCGTCACTACGGTCCATGTTGCGGCGCAAGGATACCACGGCGGCTGCGCAAGGTCTAGGCGAAGCTACTTGGAGGTGGTCCGACGTCTTGAGGTGGCCTCGAGGAGGGAGAGGTCTGCAGGATAGAGATGGAAATTTTGCAAGTGGTGCAATTGCAAACCTGGTTGATGTTGTTGGTAGTTGCGTGGTTTATGTTTCCGATGCACCTATGAATGTCACGATGGAGATGTCCATATCGTATTTGTCTACGGCAAAGCTTAATGATGAGTTAGAGATAACTTCAAGGTTGTTAGGACAGAAAGGAGGTTACTCTGGAATAATAGTTCTTCTAAGAAACAAGGTAACCGGAAGGATTATTTCAGAGGGTCGTCATTCCTTGTTTCGTTCTCATACACATGGCAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

324

Amino Acids

35.7

Weight (kDa)

8.45

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37940
rosa_chinensis RchiOBHm_Chr5g0068371
rosa_laevigata RLG00000035970
rosa_multiflora Rmu_sc0001418.1_g000001
rosa_roxburghii Rroxscaffold_1G00012410 Rroxscaffold_1G00013140
rosa_rugosa Rorug05G0389300
rosa_samantha Rh5AG448000 Rh5BG466000 Rh5DG479600
rosa_wichuraiana Rw5G041820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 654
AbsI CCTCGAGG 1 cut(s) 666
Acc16I TGCGCA 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 3 cut(s) 68, 321, 812
AccII CGCG 2 cut(s) 22, 85
AciI CCGC 4 cut(s) 22, 566, 589, 608
AcsI RAATTY 2 cut(s) 153, 700
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 651
AfiI CCNNNNNNNGG 3 cut(s) 384, 588, 671
AgsI TTSAA 5 cut(s) 98, 199, 474, 486, 849
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 726
AloI GAACNNNNNNTCC 2 cut(s) 873, 905
AluBI AGCT 6 cut(s) 46, 101, 227, 515, 632, 823
AluI AGCT 6 cut(s) 46, 101, 227, 515, 632, 823
Alw26I GTCTC 3 cut(s) 11, 39, 193
AlwNI CAGNNNCTG 3 cut(s) 37, 46, 49
Ama87I CYCGRG 1 cut(s) 666
AoxI GGCC 3 cut(s) 75, 354, 662
ApeKI GCWGC 5 cut(s) 40, 43, 46, 143, 611
ApoI RAATTY 2 cut(s) 153, 700
AspLEI GCGC 3 cut(s) 277, 594, 616
AspS9I GGNCC 5 cut(s) 163, 202, 355, 579, 645
AsuC2I CCSGG 2 cut(s) 177, 558
AsuHPI GGTGA 1 cut(s) 367
AsuII TTCGAA 1 cut(s) 536
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 4 cut(s) 163, 202, 579, 645
BbvI GCAGC 5 cut(s) 33, 52, 55, 130, 598
BccI CCATC 3 cut(s) 338, 689, 781
BceAI ACGGC 4 cut(s) 62, 553, 621, 831
BciT130I CCWGG 1 cut(s) 728
BciVI GTATCC 2 cut(s) 15, 592
BcnI CCSGG 2 cut(s) 177, 558
BcoDI GTCTC 3 cut(s) 11, 39, 193
BfaI CTAG 1 cut(s) 623
BfmI CTRYAG 2 cut(s) 38, 683
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 2 cut(s) 15, 592
BisI GCNGC 7 cut(s) 41, 44, 47, 144, 590, 609, 612
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 7 cut(s) 42, 45, 48, 145, 591, 610, 613
Bme1390I CCNGG 3 cut(s) 177, 558, 728
Bme18I GGWCC 4 cut(s) 163, 202, 579, 645
BmeRI GACNNNNNGTC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 5 cut(s) 163, 202, 355, 579, 645
BmiI GGNNCC 2 cut(s) 204, 555
BmrFI CCNGG 3 cut(s) 177, 558, 728
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 757
BmuI ACTGGG 1 cut(s) 453
BoxI GACNNNNGTC 1 cut(s) 23
BplI GAGNNNNNCTC 4 cut(s) 362, 394, 649, 681
Bpu1102I GCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 2 cut(s) 501, 676
BpuMI CCSGG 2 cut(s) 177, 558
BsaHI GRCGYC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 911
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 588, 671
Bse1I ACTGG 3 cut(s) 31, 415, 448
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 3 cut(s) 384, 588, 671
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 116, 419
BseNI ACTGG 3 cut(s) 31, 415, 448
BseRI GAGGAG 1 cut(s) 684
BseXI GCAGC 5 cut(s) 33, 52, 55, 130, 598
Bsh1236I CGCG 2 cut(s) 22, 85
BshFI GGCC 3 cut(s) 77, 356, 664
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 3 cut(s) 177, 557, 912
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 384, 588, 671
BsmAI GTCTC 3 cut(s) 11, 39, 193
BsmBI CGTCTC 2 cut(s) 11, 193
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 3 cut(s) 77, 356, 664
BsoBI CYCGRG 1 cut(s) 666
Bsp119I TTCGAA 1 cut(s) 536
Bsp143I GATC 2 cut(s) 372, 450
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 4 cut(s) 22, 566, 589, 608
BspANI GGCC 3 cut(s) 77, 356, 664
BspCNI CTCAG 2 cut(s) 115, 420
BspFNI CGCG 2 cut(s) 22, 85
BspLI GGNNCC 2 cut(s) 204, 555
BspMAI CTGCAG 2 cut(s) 42, 687
BspMI ACCTGC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 3 cut(s) 31, 415, 448
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 2 cut(s) 372, 450
BssNI GRCGYC 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 651
BstAPI GCANNNNNTGC 2 cut(s) 46, 713
BstBI TTCGAA 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 102, 428, 896
BstDSI CCRYGG 1 cut(s) 603
BstEII GGTNACC 1 cut(s) 907
BstENI CCTNNNNNAGG 2 cut(s) 382, 669
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 2 cut(s) 22, 85
BstHHI GCGC 3 cut(s) 277, 594, 616
BstKTI GATC 2 cut(s) 375, 453
BstMAI GTCTC 3 cut(s) 11, 39, 193
BstMBI GATC 2 cut(s) 372, 450
BstMWI GCNNNNNNNGC 3 cut(s) 46, 245, 713
BstNI CCWGG 1 cut(s) 728
BstPAI GACNNNNGTC 1 cut(s) 23
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 3 cut(s) 175, 556, 726
BstSFI CTRYAG 2 cut(s) 38, 683
BstUI CGCG 2 cut(s) 22, 85
BstV1I GCAGC 5 cut(s) 33, 52, 55, 130, 598
BsuI GTATCC 2 cut(s) 15, 592
BsuRI GGCC 3 cut(s) 77, 356, 664
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 1 cut(s) 562
BtuMI TCGCGA 1 cut(s) 85
BveI ACCTGC 1 cut(s) 313
CaiI CAGNNNCTG 3 cut(s) 37, 46, 49
CfoI GCGC 3 cut(s) 277, 594, 616
Cfr13I GGNCC 5 cut(s) 163, 202, 355, 579, 645
CseI GACGC 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 726
CviAII CATG 3 cut(s) 359, 583, 962
DdeI CTNAG 3 cut(s) 102, 428, 896
DpnI GATC 2 cut(s) 374, 452
DpnII GATC 2 cut(s) 372, 450
DriI GACNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 196
EciI GGCGGA 1 cut(s) 555
Eco47I GGWCC 4 cut(s) 163, 202, 579, 645
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 907
EcoNI CCTNNNNNAGG 2 cut(s) 382, 669
EcoO109I RGGNCCY 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 726
Esp3I CGTCTC 2 cut(s) 11, 193
FaeI CATG 3 cut(s) 362, 586, 965
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 358, 582, 961
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 3 cut(s) 68, 321, 812
Fnu4HI GCNGC 7 cut(s) 41, 44, 47, 144, 590, 609, 612
FokI GGATG 1 cut(s) 549
Fsp4HI GCNGC 7 cut(s) 41, 44, 47, 144, 590, 609, 612
FspBI CTAG 1 cut(s) 623
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 3 cut(s) 276, 593, 615
GluI GCNGC 7 cut(s) 41, 44, 47, 144, 590, 609, 612
HaeIII GGCC 3 cut(s) 77, 356, 664
HapII CCGG 3 cut(s) 177, 557, 912
HgaI GACGC 1 cut(s) 28
HhaI GCGC 3 cut(s) 277, 594, 616
Hin1I GRCGYC 1 cut(s) 651
Hin1II CATG 3 cut(s) 362, 586, 965
Hin6I GCGC 3 cut(s) 275, 592, 614
HinP1I GCGC 3 cut(s) 275, 592, 614
HincII GTYRAC 4 cut(s) 28, 69, 302, 345
HindII GTYRAC 4 cut(s) 28, 69, 302, 345
HindIII AAGCTT 1 cut(s) 821
HinfI GANTC 8 cut(s) 65, 87, 108, 119, 168, 180, 213, 533
HpaII CCGG 3 cut(s) 177, 557, 912
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 7 cut(s) 28, 69, 163, 302, 322, 345, 813
Hpy188I TCNGA 4 cut(s) 9, 649, 766, 928
Hpy188III TCNNGA 6 cut(s) 84, 494, 518, 655, 784, 879
Hpy8I GTNNAC 7 cut(s) 28, 69, 163, 302, 322, 345, 813
Hpy99I CGWCG 3 cut(s) 73, 188, 653
HpyAV CCTTC 2 cut(s) 455, 909
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4IV ACGT 2 cut(s) 403, 651
HpyCH4V TGCA 9 cut(s) 40, 248, 254, 350, 685, 707, 716, 722, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 245, 713
HpyF3I CTNAG 3 cut(s) 102, 428, 896
HpySE526I ACGT 2 cut(s) 403, 651
Hsp92I GRCGYC 1 cut(s) 651
Hsp92II CATG 3 cut(s) 362, 586, 965
HspAI GCGC 3 cut(s) 275, 592, 614
Kzo9I GATC 2 cut(s) 372, 450
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 5 cut(s) 33, 52, 55, 130, 598
LweI GCATC 1 cut(s) 757
MabI ACCWGGT 1 cut(s) 726
MaeI CTAG 1 cut(s) 623
MaeII ACGT 2 cut(s) 403, 651
MaeIII GTNAC 4 cut(s) 570, 781, 872, 907
MalI GATC 2 cut(s) 374, 452
MboI GATC 2 cut(s) 372, 450
MboII GAAGA 2 cut(s) 183, 884
MfeI CAATTG 2 cut(s) 249, 717
MluCI AATT 5 cut(s) 153, 249, 285, 700, 717
MlyI GAGTC 7 cut(s) 74, 81, 102, 128, 174, 177, 207
MmeI TCCRAC 1 cut(s) 672
MseI TTAA 1 cut(s) 825
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 3 cut(s) 177, 557, 912
MspR9I CCNGG 3 cut(s) 177, 558, 728
MunI CAATTG 2 cut(s) 249, 717
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 728
MvnI CGCG 2 cut(s) 22, 85
MwoI GCNNNNNNNGC 3 cut(s) 46, 245, 713
NciI CCSGG 2 cut(s) 177, 558
NdeII GATC 2 cut(s) 372, 450
NlaIII CATG 3 cut(s) 362, 586, 965
NlaIV GGNNCC 2 cut(s) 204, 555
NmuCI GTSAC 2 cut(s) 570, 781
NruI TCGCGA 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 615
NspV TTCGAA 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 7 cut(s) 42, 45, 48, 145, 591, 610, 613
PleI GAGTC 7 cut(s) 73, 81, 102, 127, 174, 176, 207
PpsI GAGTC 7 cut(s) 73, 81, 102, 127, 174, 176, 207
PpuMI RGGWCCY 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 726
PspEI GGTNACC 1 cut(s) 907
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 2 cut(s) 204, 555
PspPI GGNCC 5 cut(s) 163, 202, 355, 579, 645
PspPPI RGGWCCY 1 cut(s) 202
PspXI VCTCGAGB 1 cut(s) 666
PstI CTGCAG 2 cut(s) 42, 687
PstNI CAGNNNCTG 3 cut(s) 37, 46, 49
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 46
RruI TCGCGA 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 960
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 7 cut(s) 41, 44, 47, 144, 590, 609, 612
Sau3AI GATC 2 cut(s) 372, 450
Sau96I GGNCC 5 cut(s) 163, 202, 355, 579, 645
SchI GAGTC 7 cut(s) 74, 81, 102, 128, 174, 177, 207
ScrFI CCNGG 3 cut(s) 177, 558, 728
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 2 cut(s) 38, 683
Sfr274I CTCGAG 1 cut(s) 666
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 4 cut(s) 163, 202, 579, 645
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 516, 655, 666
SmoI CTYRAG 3 cut(s) 516, 655, 666
Sse9I AATT 5 cut(s) 153, 249, 285, 700, 717
SsiI CCGC 4 cut(s) 22, 566, 589, 608
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 3 cut(s) 175, 556, 726
TaaI ACNGT 1 cut(s) 579
TaiI ACGT 2 cut(s) 406, 654
TaqI TCGA 6 cut(s) 68, 90, 157, 171, 536, 667
TaqII GACCGA 1 cut(s) 180
TasI AATT 5 cut(s) 153, 249, 285, 700, 717
TauI GCSGC 2 cut(s) 592, 611
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TseFI GTSAC 2 cut(s) 570, 781
TseI GCWGC 5 cut(s) 40, 43, 46, 143, 611
Tsp45I GTSAC 2 cut(s) 570, 781
TspDTI ATGAA 1 cut(s) 791
TspGWI ACGGA 2 cut(s) 86, 566
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 4 cut(s) 163, 202, 579, 645
XagI CCTNNNNNAGG 2 cut(s) 382, 669
XapI RAATTY 2 cut(s) 153, 700
XhoI CTCGAG 1 cut(s) 666
XmiI GTMKAC 3 cut(s) 68, 321, 812
XspI CTAG 1 cut(s) 623
ZraI GACGTC 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.