Rmu_sc0001418.1_g000001

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001418.1
OG0018012
Physical Location & Seq
Forward (+)
2804 .. 3723
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001418.1_g000001.1.cds

Sequence Viewer

Length: 495 bp
atggagacgcgggtcaacgagtctctgcagcagctgccgacgacccaacaagagtcgacggaggccgtgtcgcgactcgacattgaagctcagcgactcgcagacgagtcaagcctctacgattatttcgctgctacgggaatccgagtggaccgagtcgaacccggactcgtcgtctcttctttcaaggtccctccccgtctcaccgacagagctggaaattttgctaatggtgcaattgcaaaccttgttgatatagtagctcactctccaatttatgttgtgggtcaacctgctaatgtttcagtagacatctccatctcgtatttgtcaactgcaaaggtccatgatgagttagagatcacctcaaagaggttaggacaaagaggacgttatactggaatacttgtgtgcctgagaaacaaagcgactggggagatcattgctgaaggtcggcattcaatgtttctttcaaaagttgttcccaaactctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

164

Amino Acids

17.96

Weight (kDa)

6.3

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37940
rosa_chinensis RchiOBHm_Chr5g0068371
rosa_laevigata RLG00000035970
rosa_multiflora Rmu_sc0001418.1_g000001
rosa_roxburghii Rroxscaffold_1G00012410 Rroxscaffold_1G00013140
rosa_rugosa Rorug05G0389300
rosa_samantha Rh5AG448000 Rh5BG466000 Rh5DG479600
rosa_wichuraiana Rw5G041820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 56, 309
AccII CGCG 2 cut(s) 10, 73
AciI CCGC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 468
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 4 cut(s) 86, 187, 462, 474
AhdI GACNNNNNGTC 1 cut(s) 173
AluBI AGCT 4 cut(s) 34, 89, 215, 263
AluI AGCT 4 cut(s) 34, 89, 215, 263
Alw26I GTCTC 3 cut(s) 27, 181, 206
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 28, 31, 34, 131
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 151, 190, 343
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 196, 355
AvaII GGWCC 3 cut(s) 151, 190, 343
BbvI GCAGC 4 cut(s) 21, 40, 43, 118
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 27, 181, 206
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 4 cut(s) 29, 32, 35, 132
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 4 cut(s) 30, 33, 36, 133
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 3 cut(s) 151, 190, 343
BmeRI GACNNNNNGTC 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 151, 190, 343
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BoxI GACNNNNGTC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 350, 382
Bpu1102I GCTNAGC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 2 cut(s) 403, 436
Bse3DI GCAATG 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 104, 407
BseNI ACTGG 2 cut(s) 403, 436
BseXI GCAGC 4 cut(s) 21, 40, 43, 118
Bsh1236I CGCG 2 cut(s) 10, 73
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 3 cut(s) 27, 181, 206
BsmBI CGTCTC 2 cut(s) 181, 206
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 360, 438
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp68I TCGCGA 1 cut(s) 73
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 103, 408
BspFNI CGCG 2 cut(s) 10, 73
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 2 cut(s) 403, 436
BssMI GATC 2 cut(s) 360, 438
Bst6I CTCTTC 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 90, 416
BstENI CCTNNNNNAGG 1 cut(s) 370
BstFNI CGCG 2 cut(s) 10, 73
BstKTI GATC 2 cut(s) 363, 441
BstMAI GTCTC 3 cut(s) 27, 181, 206
BstMBI GATC 2 cut(s) 360, 438
BstMWI GCNNNNNNNGC 2 cut(s) 34, 233
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 2 cut(s) 10, 73
BstV1I GCAGC 4 cut(s) 21, 40, 43, 118
BsuRI GGCC 1 cut(s) 65
BtuMI TCGCGA 1 cut(s) 73
BveI ACCTGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 151, 190, 343
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 347
CviJI RGCY 6 cut(s) 34, 65, 89, 114, 215, 263
CviKI_1 RGCY 6 cut(s) 34, 65, 89, 114, 215, 263
DdeI CTNAG 2 cut(s) 90, 416
DpnI GATC 2 cut(s) 362, 440
DpnII GATC 2 cut(s) 360, 438
DriI GACNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 184
Eco47I GGWCC 3 cut(s) 151, 190, 343
Eco57I CTGAAG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 190
Esp3I CGTCTC 2 cut(s) 181, 206
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 257, 279, 348, 396
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 346
FauI CCCGC 1 cut(s) 3
FblI GTMKAC 2 cut(s) 56, 309
Fnu4HI GCNGC 4 cut(s) 29, 32, 35, 132
Fsp4HI GCNGC 4 cut(s) 29, 32, 35, 132
GluI GCNGC 4 cut(s) 29, 32, 35, 132
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 350
HincII GTYRAC 4 cut(s) 16, 57, 290, 333
HindII GTYRAC 4 cut(s) 16, 57, 290, 333
HinfI GANTC 8 cut(s) 20, 53, 75, 96, 107, 141, 156, 168
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 196, 355
Hpy166II GTNNAC 6 cut(s) 16, 57, 151, 290, 310, 333
Hpy188I TCNGA 2 cut(s) 146, 494
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 6 cut(s) 16, 57, 151, 290, 310, 333
Hpy99I CGWCG 3 cut(s) 43, 61, 176
HpyAV CCTTC 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 28, 236, 242, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 233
HpyF3I CTNAG 2 cut(s) 90, 416
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 2 cut(s) 360, 438
LpnPI CCDG 6 cut(s) 178, 201, 306, 384, 417, 428
Lsp1109I GCAGC 4 cut(s) 21, 40, 43, 118
MaeII ACGT 1 cut(s) 391
MalI GATC 2 cut(s) 362, 440
MboI GATC 2 cut(s) 360, 438
MboII GAAGA 1 cut(s) 171
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 220, 237, 273
MlyI GAGTC 7 cut(s) 29, 62, 69, 90, 116, 162, 165
MnlI CCTC 6 cut(s) 55, 125, 204, 366, 376, 380
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 457
MvnI CGCG 2 cut(s) 10, 73
MwoI GCNNNNNNNGC 2 cut(s) 34, 233
NciI CCSGG 1 cut(s) 165
NdeII GATC 2 cut(s) 360, 438
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 1 cut(s) 192
NruI TCGCGA 1 cut(s) 73
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 4 cut(s) 30, 33, 36, 133
PleI GAGTC 7 cut(s) 28, 61, 69, 90, 115, 162, 164
PpsI GAGTC 7 cut(s) 28, 61, 69, 90, 115, 162, 164
PpuMI RGGWCCY 1 cut(s) 190
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 151, 190, 343
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 34
RruI TCGCGA 1 cut(s) 73
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 4 cut(s) 29, 32, 35, 132
Sau3AI GATC 2 cut(s) 360, 438
Sau96I GGNCC 3 cut(s) 151, 190, 343
SchI GAGTC 7 cut(s) 29, 62, 69, 90, 116, 162, 165
ScrFI CCNGG 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 3 cut(s) 151, 190, 343
Sse9I AATT 3 cut(s) 220, 237, 273
SsiI CCGC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 163
TaiI ACGT 1 cut(s) 394
TaqI TCGA 3 cut(s) 56, 78, 159
TaqII GACCGA 1 cut(s) 168
TasI AATT 3 cut(s) 220, 237, 273
TfiI GAWTC 1 cut(s) 141
TseI GCWGC 4 cut(s) 28, 31, 34, 131
TspGWI ACGGA 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 151, 190, 343
XagI CCTNNNNNAGG 1 cut(s) 370
XapI RAATTY 1 cut(s) 220
XmiI GTMKAC 2 cut(s) 56, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.