Rh5DG479600

Acyl-coenzyme A thioesterase 13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018012
Physical Location & Seq
Reverse (-)
75713327 .. 75714260
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG479600.1

Sequence Viewer

Length: 507 bp
ATGGATCCGAATATGGAGACGCGGGTCAACGAGTCTCTGCAGCAGCTGCCGACGACCCAACAAGAGTCGACGGAGGCCGTGTCGCGACTCGACATTGAAGCTCAGCGACTCGCAGACGAGTCAAGCCTCTACGATTATTTCGCTGCTACGGGAATCCGAGTGGACCGAGTCGAACCCGGACTCGTCGTCTCTTCTTTCAAGGTCCCTCCCCGTCTCACCGACAGAGCTGGAAATTTTGCTAATGGTGCAATTGCAAACCTTGTTGATATAGTAGCTCACTCTCCAATTTATGTTGTGGGTCAACCTGCTAATGTTTCAGTAGACATCTCCATCTCGTATTTGTCAACTGCAAAGGTCCATGATGAGTTAGAGATCACCTCAAAGAGGTTAGGACAAAGAGGACGTTATACTGGAATACTTGTGTGCCTGAGAAACAAAGCGACTGGGGAGATCATTGCTGAAGGTCGGCATTCAATGTTTCTTTCAAAAGTTGTTCCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

168

Amino Acids

18.41

Weight (kDa)

5.92

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018012)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37940
rosa_chinensis RchiOBHm_Chr5g0068371
rosa_laevigata RLG00000035970
rosa_multiflora Rmu_sc0001418.1_g000001
rosa_roxburghii Rroxscaffold_1G00012410 Rroxscaffold_1G00013140
rosa_rugosa Rorug05G0389300
rosa_samantha Rh5AG448000 Rh5BG466000 Rh5DG479600
rosa_wichuraiana Rw5G041820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 2 cut(s) 68, 321
AccII CGCG 2 cut(s) 22, 85
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 384
AgsI TTSAA 4 cut(s) 98, 199, 474, 486
AhdI GACNNNNNGTC 1 cut(s) 185
AluBI AGCT 4 cut(s) 46, 101, 227, 275
AluI AGCT 4 cut(s) 46, 101, 227, 275
Alw26I GTCTC 4 cut(s) 11, 39, 193, 218
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 4 cut(s) 40, 43, 46, 143
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 3 cut(s) 163, 202, 355
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 208, 367
AvaII GGWCC 3 cut(s) 163, 202, 355
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 33, 52, 55, 130
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 4 cut(s) 11, 39, 193, 218
BfmI CTRYAG 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 4 cut(s) 41, 44, 47, 144
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 4 cut(s) 42, 45, 48, 145
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 3 cut(s) 163, 202, 355
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 163, 202, 355
BmiI GGNNCC 2 cut(s) 6, 204
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 453
BoxI GACNNNNGTC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 362, 394
Bpu1102I GCTNAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 415, 448
Bse3DI GCAATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 116, 419
BseNI ACTGG 2 cut(s) 415, 448
BseXI GCAGC 4 cut(s) 33, 52, 55, 130
Bsh1236I CGCG 2 cut(s) 22, 85
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 4 cut(s) 11, 39, 193, 218
BsmBI CGTCTC 3 cut(s) 11, 193, 218
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 4, 372, 450
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 115, 420
BspFNI CGCG 2 cut(s) 22, 85
BspLI GGNNCC 2 cut(s) 6, 204
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 453
BsrI ACTGG 2 cut(s) 415, 448
BssMI GATC 3 cut(s) 4, 372, 450
Bst6I CTCTTC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 102, 428
BstENI CCTNNNNNAGG 1 cut(s) 382
BstFNI CGCG 2 cut(s) 22, 85
BstKTI GATC 3 cut(s) 7, 375, 453
BstMAI GTCTC 4 cut(s) 11, 39, 193, 218
BstMBI GATC 3 cut(s) 4, 372, 450
BstMWI GCNNNNNNNGC 2 cut(s) 46, 245
BstPAI GACNNNNGTC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 38
BstUI CGCG 2 cut(s) 22, 85
BstV1I GCAGC 4 cut(s) 33, 52, 55, 130
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 77
BtuMI TCGCGA 1 cut(s) 85
BveI ACCTGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 46
Cfr13I GGNCC 3 cut(s) 163, 202, 355
CseI GACGC 1 cut(s) 28
CviAII CATG 1 cut(s) 359
CviJI RGCY 6 cut(s) 46, 77, 101, 126, 227, 275
CviKI_1 RGCY 6 cut(s) 46, 77, 101, 126, 227, 275
DdeI CTNAG 2 cut(s) 102, 428
DpnI GATC 3 cut(s) 6, 374, 452
DpnII GATC 3 cut(s) 4, 372, 450
DriI GACNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 163, 202, 355
Eco57I CTGAAG 1 cut(s) 480
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 202
Esp3I CGTCTC 3 cut(s) 11, 193, 218
FaeI CATG 1 cut(s) 362
FaiI YATR 5 cut(s) 14, 269, 291, 360, 408
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 15
FblI GTMKAC 2 cut(s) 68, 321
Fnu4HI GCNGC 4 cut(s) 41, 44, 47, 144
Fsp4HI GCNGC 4 cut(s) 41, 44, 47, 144
GluI GCNGC 4 cut(s) 41, 44, 47, 144
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 4 cut(s) 28, 69, 302, 345
HindII GTYRAC 4 cut(s) 28, 69, 302, 345
HinfI GANTC 8 cut(s) 32, 65, 87, 108, 119, 153, 168, 180
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 208, 367
Hpy166II GTNNAC 6 cut(s) 28, 69, 163, 302, 322, 345
Hpy188I TCNGA 3 cut(s) 9, 158, 506
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 6 cut(s) 28, 69, 163, 302, 322, 345
Hpy99I CGWCG 3 cut(s) 55, 73, 188
HpyAV CCTTC 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 40, 248, 254, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 245
HpyF3I CTNAG 2 cut(s) 102, 428
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 3 cut(s) 4, 372, 450
LpnPI CCDG 6 cut(s) 190, 213, 318, 396, 429, 440
Lsp1109I GCAGC 4 cut(s) 33, 52, 55, 130
MaeII ACGT 1 cut(s) 403
MalI GATC 3 cut(s) 6, 374, 452
MboI GATC 3 cut(s) 4, 372, 450
MboII GAAGA 1 cut(s) 183
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 232, 249, 285
MlyI GAGTC 7 cut(s) 41, 74, 81, 102, 128, 174, 177
MnlI CCTC 6 cut(s) 67, 137, 216, 378, 388, 392
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 469
MvnI CGCG 2 cut(s) 22, 85
MwoI GCNNNNNNNGC 2 cut(s) 46, 245
NciI CCSGG 1 cut(s) 177
NdeII GATC 3 cut(s) 4, 372, 450
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 2 cut(s) 6, 204
NruI TCGCGA 1 cut(s) 85
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 42, 45, 48, 145
PleI GAGTC 7 cut(s) 40, 73, 81, 102, 127, 174, 176
PpsI GAGTC 7 cut(s) 40, 73, 81, 102, 127, 174, 176
PpuMI RGGWCCY 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 6, 204
PspPI GGNCC 3 cut(s) 163, 202, 355
PspPPI RGGWCCY 1 cut(s) 202
PstI CTGCAG 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 46
RruI TCGCGA 1 cut(s) 85
SalI GTCGAC 1 cut(s) 67
SatI GCNGC 4 cut(s) 41, 44, 47, 144
Sau3AI GATC 3 cut(s) 4, 372, 450
Sau96I GGNCC 3 cut(s) 163, 202, 355
SchI GAGTC 7 cut(s) 41, 74, 81, 102, 128, 174, 177
ScrFI CCNGG 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 38
SinI GGWCC 3 cut(s) 163, 202, 355
Sse9I AATT 3 cut(s) 232, 249, 285
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 175
TaiI ACGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 68, 90, 171
TaqII GACCGA 1 cut(s) 180
TasI AATT 3 cut(s) 232, 249, 285
TfiI GAWTC 1 cut(s) 153
TseI GCWGC 4 cut(s) 40, 43, 46, 143
TspGWI ACGGA 1 cut(s) 86
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 3 cut(s) 163, 202, 355
XagI CCTNNNNNAGG 1 cut(s) 382
XapI RAATTY 1 cut(s) 232
XmiI GTMKAC 2 cut(s) 68, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.