Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015454

Physical Location & Seq

Genomic Coordinates Reverse (-)

34038160 .. 34038814

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGTTACACTCATCCTTGAAATCCAAGGTACTCCACCCATGCACAAAACTTTTTCGAATCTTCAGATTCAAGCTCAAAAGGCCCTTCTTTATAAGACCCCGTCATGTTCGTCCTCACTACAACAAGGTTCAAACGACTCCCAAGAAGAATAAGATAACTGCATTGTTCCGGTCAGCTTTCCGTTCACTGAGGAAGCCAAAGGGAATGGACAGACTAGCAGCCATCAAGAGTTTCTCCGAGAAAGGTGACCGTAGAGTGCTTCCTCCCTCACCAGTTACACCAGCCTATGTGAAGGCAATGGCTGAAAAAAGAGTAAACTCAGATGACGACGAAGTGCAGGATGCATGCAGGAGTTTCGAGAACTACTTGGTGGAGATGATTGTTGAAGAAGGGAAACTGAGGGATTTGACCGATGTGGAAGAGCTTCTGTATTGCTGGAAGAACCTGAAATGCCCGGTTTACATTGATTTGGTTAGTAGATTCTATGGAGAACTTTGCAAGGACTTGTTCTCTCCTGACAATACTGATGGAAGTTGTAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.26

Weight (kDa)

9.67

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30395
fragaria_vesca	FvH4_3g40300
malus_domestica	MD03G1053700.v1.1 MD11G1055300.v1.1
prunus_persica	Prupe.6G042800_v2.0.a1
pyrus_communis	pycom11g04510
rosa_chinensis	RchiOBHm_Chr5g0072641
rosa_laevigata	RLG00000036319
rosa_multiflora	Rmu_sc0002088.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008510
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG475900 Rh5BG496000 Rh5CG519800 Rh5DG508500
rosa_wichuraiana	Rw5G044190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	22, 73, 134, 389
AluBI	AGCT	3 cut(s)	76, 179, 427
AluI	AGCT	3 cut(s)	76, 179, 427
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	2 cut(s)	260, 264
AsuII	TTCGAA	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	233, 524
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BcnI	CCSGG	1 cut(s)	458
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	14, 349
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	182, 336, 392
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	172, 458
BsnI	GGCC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	58
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	183, 335, 393
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	191, 322, 401
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	14, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	14, 349
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	42, 107, 348
CviJI	RGCY	8 cut(s)	76, 85, 179, 199, 224, 287, 305, 427
CviKI_1	RGCY	8 cut(s)	76, 85, 179, 199, 224, 287, 305, 427
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	191, 322, 401
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	45, 110, 351
FaiI	YATR	7 cut(s)	43, 95, 108, 291, 349, 489, 547
FatI	CATG	3 cut(s)	41, 106, 347
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	2 cut(s)	172, 458
Hin1II	CATG	3 cut(s)	45, 110, 351
HinfI	GANTC	4 cut(s)	60, 69, 139, 483
HpaII	CCGG	2 cut(s)	172, 458
HphI	GGTGA	2 cut(s)	260, 264
Hpy166II	GTNNAC	3 cut(s)	188, 319, 463
Hpy188I	TCNGA	3 cut(s)	68, 241, 325
Hpy188III	TCNNGA	3 cut(s)	229, 361, 518
Hpy8I	GTNNAC	3 cut(s)	188, 319, 463
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	97, 289, 386
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	6 cut(s)	45, 164, 340, 347, 351, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	191, 322, 401
Hsp92II	CATG	3 cut(s)	45, 110, 351
LguI	GCTCTTC	1 cut(s)	417
LpnPI	CCDG	9 cut(s)	185, 288, 297, 326, 337, 424, 461, 471, 531
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	6, 248, 277
MboII	GAAGA	5 cut(s)	55, 160, 401, 434, 454
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	126, 186, 276, 280, 396
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	426
MspI	CCGG	2 cut(s)	172, 458
MspR9I	CCNGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	458
NlaIII	CATG	3 cut(s)	45, 110, 351
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	60, 69, 483
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	95
PspEI	GGTNACC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	458
SetI	ASST	8 cut(s)	8, 33, 78, 132, 181, 250, 429, 450
SfaNI	GCATC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	58
SphI	GCATGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	58, 360
TaqII	GACCGA	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	60, 69, 483
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.