Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015454

Physical Location & Seq

Genomic Coordinates Reverse (-)

79397743 .. 79398303

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGGTTAAAAACATCCTTGAAATCCAAGGTACTCCACCCATGCACAAAACTTTTTCGAATCTTCAGATTCAAGCTCAAAAAACCCTTCTTTATAAGACCCCGTCATATTCGTCCTCACTACACAAAGGTTCAAACGGTTCCCAAGAAGAACAAAATGACTGCATTGTTCCAGTCAGCTTTCCGTTCACTGAGGAAGCCAAAAGGAATGGACAGACTAGCAGCGATCAAGAGTTTCTCCGAGAAAGGTGACCACAGAGTGCTTCCTCCCTCACCAGTTACACCAGCCTATGTGAAGGCAATGGCTGAAAAAACAGTAAATTCGGATCACGAAGAAGTGCAAGATGCATGCAGGAGTTTTGAGAACTATTTGGTGGAGATGATTGTTGAAGAAGGGAAAGTGAGGGACTTGACAGATGTGGACTTGACAGATGTGGAAGAGCTTCTGTATTGCTGGAAGAACCTGAAATGCCCTGTTTTTATTGATTTGGTTAGTAGATTCTACGGAGAGCTTTGCAAGGACCTGTTTTCACCTGACACTGATGGAAGTAGTAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

21.55

Weight (kDa)

9.49

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0015454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30395
fragaria_vesca	FvH4_3g40300
malus_domestica	MD03G1053700.v1.1 MD11G1055300.v1.1
prunus_persica	Prupe.6G042800_v2.0.a1
pyrus_communis	pycom11g04510
rosa_chinensis	RchiOBHm_Chr5g0072641
rosa_laevigata	RLG00000036319
rosa_multiflora	Rmu_sc0002088.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008510
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG475900 Rh5BG496000 Rh5CG519800 Rh5DG508500
rosa_wichuraiana	Rw5G044190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	4 cut(s)	22, 73, 134, 389
AluBI	AGCT	5 cut(s)	76, 179, 442, 511, 555
AluI	AGCT	5 cut(s)	76, 179, 442, 511, 555
AlwI	GGATC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	3 cut(s)	260, 264, 522
AsuII	TTCGAA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	172, 275
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	172, 275
BseXI	GCAGC	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	225, 325
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	172, 275
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	225, 325
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	139, 316
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	191
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	228, 328
BstMBI	GATC	2 cut(s)	225, 325
BstNSI	RCATGY	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	188, 537
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	2 cut(s)	42, 348
CviJI	RGCY	8 cut(s)	76, 179, 199, 287, 305, 442, 511, 555
CviKI_1	RGCY	8 cut(s)	76, 179, 199, 287, 305, 442, 511, 555
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	2 cut(s)	227, 327
DpnII	GATC	2 cut(s)	225, 325
DraIII	CACNNNGTG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	45, 351
FaiI	YATR	6 cut(s)	43, 95, 108, 291, 349, 559
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	41, 347
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	45, 351
HinfI	GANTC	3 cut(s)	60, 69, 498
HphI	GGTGA	3 cut(s)	260, 264, 522
Hpy166II	GTNNAC	2 cut(s)	188, 421
Hpy188I	TCNGA	3 cut(s)	68, 241, 325
Hpy188III	TCNNGA	2 cut(s)	229, 329
Hpy8I	GTNNAC	2 cut(s)	188, 421
HpyAV	CCTTC	3 cut(s)	97, 289, 386
HpyCH4III	ACNGT	2 cut(s)	139, 316
HpyCH4V	TGCA	6 cut(s)	45, 164, 340, 347, 351, 516
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	45, 351
Kzo9I	GATC	2 cut(s)	225, 325
LguI	GCTCTTC	1 cut(s)	432
LpnPI	CCDG	9 cut(s)	185, 288, 297, 337, 439, 476, 486, 536, 546
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	248, 277
MalI	GATC	2 cut(s)	227, 327
MboI	GATC	2 cut(s)	225, 325
MboII	GAAGA	6 cut(s)	55, 160, 344, 401, 449, 469
MluCI	AATT	1 cut(s)	319
MnlI	CCTC	5 cut(s)	126, 186, 276, 280, 396
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	8
NdeII	GATC	2 cut(s)	225, 325
NlaIII	CATG	2 cut(s)	45, 351
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	60, 69, 498
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	520
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	520
PspPPI	RGGWCCY	1 cut(s)	520
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	225, 325
Sau96I	GGNCC	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	520
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	139, 316
TaqI	TCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	3 cut(s)	60, 69, 498
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	195, 544
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	2 cut(s)	173, 519
TspRI	CASTG	2 cut(s)	195, 544
Tth111I	GACNNNGTC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.