Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015454

Physical Location & Seq

Genomic Coordinates Forward (+)

4704546 .. 4705112

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1055300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGTTGAAAGCATCAGTTGCCTTGAGATCCAAGCTACTCAAACCATGCAGAAATTTCTTACAAATCTTCAGATTCAAGCTCAAAAAACCATTCTTTTTAAGAGCTCTTCGTCTCCGTCGATCTCCTTACACCCAAGTTAAAGACGATAAAAAGTCTCTGAAGAAGAAGAGTCGGATAACTTTGTTCCTATCATCTTTCTGTTCAACCAGGAAGCCGAAAGGAATGGACAGACTAGCAGCACTCAAGAGCTTCTCCGAAAGAGGGGGTGACGGAAATGGAATAATGCACTATTCGTCACCAGTCACACCGGCTTATTTGAAGGCTATGTCCGGAGGAAGGGCGGCGGCTTCGGGTCATGACGAGGTGCAAGATGCGTGCAGGAGTTTTGAGAACTATTTGGTGGAGATGATCATTGAGGAAGGGAAAGTGGGGGACTTGATGGATGTGGAAGAGCTTCTGTATTGCTGGAAGAACCTCAAGTGCCCTGTTTTCATTGATTTGGTTGGGAGATTCTATGGGGAGCTTTGCAAGGACTTGTTTTCCCCTACCAGTGATCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.39

Weight (kDa)

9.69

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30395
fragaria_vesca	FvH4_3g40300
malus_domestica	MD03G1053700.v1.1 MD11G1055300.v1.1
prunus_persica	Prupe.6G042800_v2.0.a1
pyrus_communis	pycom11g04510
rosa_chinensis	RchiOBHm_Chr5g0072641
rosa_laevigata	RLG00000036319
rosa_multiflora	Rmu_sc0002088.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008510
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG475900 Rh5BG496000 Rh5CG519800 Rh5DG508500
rosa_wichuraiana	Rw5G044190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	332
AciI	CCGC	2 cut(s)	344, 347
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	2 cut(s)	55, 182
AfiI	CCNNNNNNNGG	2 cut(s)	264, 339
AgsI	TTSAA	4 cut(s)	10, 79, 207, 322
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	6 cut(s)	37, 82, 107, 252, 457, 526
AluI	AGCT	6 cut(s)	37, 82, 107, 252, 457, 526
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	119, 162
AlwI	GGATC	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	281, 291
BaeGI	GKGCMC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	2 cut(s)	411, 556
BcoDI	GTCTC	2 cut(s)	119, 162
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	3 cut(s)	240, 345, 348
BlsI	GCNGC	3 cut(s)	241, 346, 349
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	2 cut(s)	23, 364
BpuEI	CTTGAG	3 cut(s)	46, 230, 464
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 339
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	302, 552
BseAI	TCCGGA	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	264, 339
BseNI	ACTGG	2 cut(s)	302, 552
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	311, 333
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	264, 339
BsmAI	GTCTC	2 cut(s)	119, 162
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	109, 488
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	29, 122, 411, 556
BspACI	CCGC	2 cut(s)	344, 347
BspEI	TCCGGA	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	358
BspPI	GGATC	1 cut(s)	24
BspQI	GCTCTTC	2 cut(s)	114, 447
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	302, 552
BssAI	RCCGGY	1 cut(s)	310
BssMI	GATC	4 cut(s)	29, 122, 411, 556
Bst2UI	CCWGG	1 cut(s)	211
Bst6I	CTCTTC	3 cut(s)	114, 164, 447
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	32, 125, 414, 559
BstMAI	GTCTC	2 cut(s)	119, 162
BstMBI	GATC	4 cut(s)	29, 122, 411, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	379
CciI	TCATGA	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	310
CviAII	CATG	2 cut(s)	48, 359
DpnI	GATC	4 cut(s)	31, 124, 413, 558
DpnII	GATC	4 cut(s)	29, 122, 411, 556
Eam1104I	CTCTTC	3 cut(s)	114, 164, 447
EarI	CTCTTC	3 cut(s)	114, 164, 447
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	55, 182
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	51, 362
FaiI	YATR	4 cut(s)	49, 329, 360, 519
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	47, 358
FbaI	TGATCA	2 cut(s)	411, 556
Fnu4HI	GCNGC	3 cut(s)	240, 345, 348
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	240, 345, 348
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	3 cut(s)	240, 345, 348
HapII	CCGG	2 cut(s)	311, 333
Hin1II	CATG	2 cut(s)	51, 362
HinfI	GANTC	3 cut(s)	75, 172, 513
HpaII	CCGG	2 cut(s)	311, 333
HphI	GGTGA	2 cut(s)	281, 291
Hpy188I	TCNGA	4 cut(s)	74, 162, 177, 259
Hpy188III	TCNNGA	3 cut(s)	247, 333, 359
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	316, 333, 416
HpyCH4V	TGCA	5 cut(s)	51, 289, 370, 381, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	2 cut(s)	51, 362
Kpn2I	TCCGGA	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	411, 556
Kzo9I	GATC	4 cut(s)	29, 122, 411, 556
LguI	GCTCTTC	2 cut(s)	114, 447
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	8 cut(s)	196, 223, 315, 324, 346, 367, 454, 501
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	23, 364
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	269, 297, 304
MalI	GATC	4 cut(s)	31, 124, 413, 558
MboI	GATC	4 cut(s)	29, 122, 411, 556
MboII	GAAGA	7 cut(s)	61, 101, 175, 178, 181, 464, 484
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	109, 488
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	257, 329, 358, 412, 488
MroI	TCCGGA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	101, 141
MspI	CCGG	2 cut(s)	311, 333
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	29, 122, 411, 556
NlaIII	CATG	2 cut(s)	51, 362
NmuCI	GTSAC	3 cut(s)	269, 297, 304
PagI	TCATGA	1 cut(s)	358
PciSI	GCTCTTC	2 cut(s)	114, 447
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	75, 513
PkrI	GCNGC	3 cut(s)	241, 346, 349
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	109
SapI	GCTCTTC	2 cut(s)	114, 447
SaqAI	TTAA	2 cut(s)	101, 141
SatI	GCNGC	3 cut(s)	240, 345, 348
Sau3AI	GATC	4 cut(s)	29, 122, 411, 556
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	109, 488
SetI	ASST	8 cut(s)	39, 84, 109, 254, 369, 459, 480, 528
SfaNI	GCATC	2 cut(s)	23, 364
SmlI	CTYRAG	3 cut(s)	25, 245, 479
SmoI	CTYRAG	3 cut(s)	25, 245, 479
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	344, 347
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	209
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	55
TauI	GCSGC	2 cut(s)	347, 350
TfiI	GAWTC	2 cut(s)	75, 513
Tru1I	TTAA	2 cut(s)	101, 141
Tru9I	TTAA	2 cut(s)	101, 141
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	3 cut(s)	269, 297, 304
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	269, 297, 304
TspDTI	ATGAA	2 cut(s)	17, 484
TspGWI	ACGGA	2 cut(s)	107, 288
TspRI	CASTG	1 cut(s)	559
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.