Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015454

Physical Location & Seq

Genomic Coordinates Forward (+)

4288336 .. 4288902

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1053700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGTTGAAAGCATCAGTTGCCTTGAGATCCAAGCTACTCAAACCATGCAGAAATTTCTTACAAATCTTCAGATTCAAGCTCAAAAAACCCTTCTTTATAAGAGCTCTTCATCTCCGTCGATCACCTTACACCCAAGTTAAACCGGATAAAAAGGGTCCGAAGAAGAAGAGTCGGTTAACTTCGTTCCCATCCACTTTCTATTCACCCATGAAGCCGAAAAGAATGGACAGACTAGCAGCGCTCAAGAGCTTCTCAGAAAAAGGGGGCGACGGGAATGGAATAACGCATTATTCGTCACCCGTCACACCGGCTTATTTGAAGGCTATGAGAGGAAGGGCGGCGACTTCGGATCACGATGAGGTGCAAGATGCGTGCAGGAGTTTTGAGATCTATTTGGTGGAAATGATCATTGAGGAAGGGCAAGTCGGGGACTTGATGGATGTGGAAGAGCTTCTGTATTGCTGGAAGAACCTCAAGTGCCCTGTTTTCATTGATTTGGTTGGGCGATTTTATGGAGAGCTTTGCAAGGACTTGTTTTCCACTACCAGTGATGAAAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.57

Weight (kDa)

9.6

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30395
fragaria_vesca	FvH4_3g40300
malus_domestica	MD03G1053700.v1.1 MD11G1055300.v1.1
prunus_persica	Prupe.6G042800_v2.0.a1
pyrus_communis	pycom11g04510
rosa_chinensis	RchiOBHm_Chr5g0072641
rosa_laevigata	RLG00000036319
rosa_multiflora	Rmu_sc0002088.1_g000003
rosa_roxburghii	Rroxscaffold_1G00008510
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG475900 Rh5BG496000 Rh5CG519800 Rh5DG508500
rosa_wichuraiana	Rw5G044190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	24, 360
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	55
AfeI	AGCGCT	1 cut(s)	243
AgsI	TTSAA	3 cut(s)	10, 79, 322
AluBI	AGCT	6 cut(s)	37, 82, 107, 252, 454, 523
AluI	AGCT	6 cut(s)	37, 82, 107, 252, 454, 523
Alw21I	GWGCWC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	24, 360
Aor51HI	AGCGCT	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	117, 198, 291
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	199, 433
BclI	TGATCA	1 cut(s)	408
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	2 cut(s)	240, 342
BlsI	GCNGC	2 cut(s)	241, 343
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	23, 361
BpuEI	CTTGAG	3 cut(s)	46, 230, 461
BsaWI	WCCGGW	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	549
BseGI	GGATG	2 cut(s)	191, 448
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	146, 311
BslFI	GGGAC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	109, 485
Bsp143I	GATC	5 cut(s)	29, 122, 352, 390, 408
BspACI	CCGC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	24, 360
BspQI	GCTCTTC	2 cut(s)	114, 444
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	310
BssMI	GATC	5 cut(s)	29, 122, 352, 390, 408
Bst6I	CTCTTC	3 cut(s)	114, 164, 444
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	191, 448
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	5 cut(s)	32, 125, 355, 393, 411
BstMBI	GATC	5 cut(s)	29, 122, 352, 390, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	2 cut(s)	29, 390
BstYI	RGATCY	2 cut(s)	29, 390
BtsCI	GGATG	2 cut(s)	191, 448
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	48, 211
CviJI	RGCY	9 cut(s)	37, 82, 107, 217, 252, 314, 326, 454, 523
CviKI_1	RGCY	9 cut(s)	37, 82, 107, 217, 252, 314, 326, 454, 523
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	5 cut(s)	31, 124, 354, 392, 410
DpnII	GATC	5 cut(s)	29, 122, 352, 390, 408
Eam1104I	CTCTTC	3 cut(s)	114, 164, 444
EarI	CTCTTC	3 cut(s)	114, 164, 444
Ecl136II	GAGCTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	158
Eco47III	AGCGCT	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	109
FaeI	CATG	2 cut(s)	51, 214
FaiI	YATR	6 cut(s)	49, 101, 212, 329, 516, 565
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	47, 210
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	240, 342
FokI	GGATG	2 cut(s)	178, 455
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	240, 342
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	240, 342
HaeII	RGCGCY	1 cut(s)	245
HapII	CCGG	2 cut(s)	146, 311
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	51, 214
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	75, 172
HpaI	GTTAAC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	146, 311
HphI	GGTGA	3 cut(s)	117, 198, 291
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	4 cut(s)	74, 162, 259, 352
Hpy188III	TCNNGA	2 cut(s)	247, 356
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	2 cut(s)	123, 275
HpyAV	CCTTC	4 cut(s)	103, 316, 330, 413
HpyCH4V	TGCA	4 cut(s)	51, 367, 378, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	51, 214
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	408
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	29, 122, 352, 390, 408
LguI	GCTCTTC	2 cut(s)	114, 444
LpnPI	CCDG	6 cut(s)	159, 324, 364, 451, 498, 562
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	23, 361
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	297, 304
MalI	GATC	5 cut(s)	31, 124, 354, 392, 410
MboI	GATC	5 cut(s)	29, 122, 352, 390, 408
MboII	GAAGA	7 cut(s)	61, 101, 175, 178, 181, 461, 481
MflI	RGATCY	2 cut(s)	29, 390
MhlI	GDGCHC	2 cut(s)	109, 485
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	326, 355, 409, 485
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	141, 179
MspI	CCGG	2 cut(s)	146, 311
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	5 cut(s)	29, 122, 352, 390, 408
NlaIII	CATG	2 cut(s)	51, 214
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	297, 304
PciSI	GCTCTTC	2 cut(s)	114, 444
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	241, 343
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	29, 390
SacI	GAGCTC	1 cut(s)	109
SapI	GCTCTTC	2 cut(s)	114, 444
SaqAI	TTAA	2 cut(s)	141, 179
SatI	GCNGC	2 cut(s)	240, 342
Sau3AI	GATC	5 cut(s)	29, 122, 352, 390, 408
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	109, 485
SetI	ASST	9 cut(s)	39, 84, 109, 130, 254, 366, 456, 477, 525
SfaNI	GCATC	2 cut(s)	23, 361
SinI	GGWCC	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	25, 245, 476
SmoI	CTYRAG	3 cut(s)	25, 245, 476
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	109
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	141, 179
Tru9I	TTAA	2 cut(s)	141, 179
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	297, 304
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	2 cut(s)	297, 304
TspDTI	ATGAA	4 cut(s)	17, 101, 227, 481
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.