expressed protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56240 AT5G56240 AT5G56240 AT5G56240 AT5G56250 AT5G56250 |
| fragaria_vesca | FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 |
| malus_domestica | MD03G1043400.v1.1 MD11G1046500.v1.1 |
| prunus_persica | Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 |
| pyrus_communis | pycom03g03360 pycom11g03790 |
| rosa_chinensis | RchiOBHm_Chr5g0074531 |
| rosa_laevigata | RLG00000036484 |
| rosa_multiflora | Rmu_sc0001467.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00007010 |
| rosa_rugosa | Rorug05G0432400 Rorug05G0432500.1 Rorug05G0432600 Rorug05G0432600 Rorug05G0432600 |
| rosa_samantha | Rh5AG489800 Rh5BG510600 Rh5CG534400 Rh5DG523100 |
| rosa_wichuraiana | Rw5G045400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 435, 584 |
| AccB1I | GGYRCC | 2 cut(s) | 1127, 3529 |
| AccI | GTMKAC | 1 cut(s) | 4271 |
| AciI | CCGC | 7 cut(s) | 9, 362, 854, 1480, 3854, 4073, 4222 |
| AclI | AACGTT | 2 cut(s) | 205, 3302 |
| AcoI | YGGCCR | 2 cut(s) | 1492, 3538 |
| AcuI | CTGAAG | 9 cut(s) | 413, 471, 558, 1065, 1878, 2670, 2814, 3046, 3198 |
| AfaI | GTAC | 5 cut(s) | 292, 1274, 2114, 2314, 4130 |
| AflIII | ACRYGT | 2 cut(s) | 1556, 2586 |
| AgeI | ACCGGT | 1 cut(s) | 3526 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 644, 676, 3769, 3801 |
| Alw21I | GWGCWC | 2 cut(s) | 1891, 2046 |
| Alw26I | GTCTC | 5 cut(s) | 208, 257, 392, 2040, 2188 |
| Alw44I | GTGCAC | 2 cut(s) | 1887, 2042 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4090 |
| Ama87I | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| AoxI | GGCC | 7 cut(s) | 179, 981, 1492, 2241, 3538, 3630, 3679 |
| ApaLI | GTGCAC | 2 cut(s) | 1887, 2042 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4231, 4263 |
| AseI | ATTAAT | 1 cut(s) | 2571 |
| AsiGI | ACCGGT | 1 cut(s) | 3526 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 18, 970, 1591, 3317 |
| AspA2I | CCTAGG | 1 cut(s) | 2729 |
| AspS9I | GGNCC | 7 cut(s) | 596, 981, 2702, 3092, 3285, 3758, 4226 |
| AsuC2I | CCSGG | 4 cut(s) | 154, 644, 645, 2478 |
| AsuHPI | GGTGA | 8 cut(s) | 2333, 2396, 2612, 2829, 3177, 3516, 3845, 4110 |
| AsuII | TTCGAA | 1 cut(s) | 1585 |
| AsuNHI | GCTAGC | 1 cut(s) | 406 |
| AvaI | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| AvaII | GGWCC | 6 cut(s) | 596, 2702, 3092, 3285, 3758, 4226 |
| AvrII | CCTAGG | 1 cut(s) | 2729 |
| AxyI | CCTNAGG | 1 cut(s) | 3819 |
| BaeGI | GKGCMC | 2 cut(s) | 1891, 2046 |
| BalI | TGGCCA | 2 cut(s) | 1494, 3540 |
| BamHI | GGATCC | 2 cut(s) | 2458, 3685 |
| BanI | GGYRCC | 2 cut(s) | 1127, 3529 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1182, 1214, 2656, 2688 |
| BbsI | GAAGAC | 5 cut(s) | 905, 1390, 2400, 2435, 4250 |
| Bbv12I | GWGCWC | 2 cut(s) | 1891, 2046 |
| BceAI | ACGGC | 1 cut(s) | 893 |
| BciVI | GTATCC | 2 cut(s) | 2296, 2818 |
| BclI | TGATCA | 4 cut(s) | 54, 355, 1030, 3118 |
| BcnI | CCSGG | 4 cut(s) | 154, 644, 645, 2478 |
| BcoDI | GTCTC | 5 cut(s) | 208, 257, 392, 2040, 2188 |
| BfaI | CTAG | 8 cut(s) | 407, 1884, 2439, 2502, 2730, 2973, 3029, 4158 |
| BfmI | CTRYAG | 6 cut(s) | 591, 1780, 1830, 2871, 2985, 4217 |
| BfuAI | ACCTGC | 2 cut(s) | 435, 584 |
| BfuI | GTATCC | 2 cut(s) | 2296, 2818 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3745 |
| BglII | AGATCT | 2 cut(s) | 67, 952 |
| BlnI | CCTAGG | 1 cut(s) | 2729 |
| BlpI | GCTNAGC | 1 cut(s) | 538 |
| Bme18I | GGWCC | 6 cut(s) | 596, 2702, 3092, 3285, 3758, 4226 |
| BmeT110I | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| BmgT120I | GGNCC | 7 cut(s) | 596, 981, 2702, 3092, 3285, 3758, 4226 |
| BmiI | GGNNCC | 9 cut(s) | 269, 1129, 2235, 2460, 3093, 3531, 3687, 3816, 4227 |
| BmrI | ACTGGG | 1 cut(s) | 2086 |
| BmtI | GCTAGC | 1 cut(s) | 410 |
| BmuI | ACTGGG | 1 cut(s) | 2086 |
| BpiI | GAAGAC | 5 cut(s) | 905, 1390, 2400, 2435, 4250 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1747, 1779, 3079, 3111 |
| BpmI | CTGGAG | 2 cut(s) | 1900, 3605 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1080 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 538 |
| Bpu14I | TTCGAA | 1 cut(s) | 1585 |
| BpuEI | CTTGAG | 5 cut(s) | 152, 2022, 2781, 3104, 3313 |
| BpuMI | CCSGG | 4 cut(s) | 154, 644, 645, 2478 |
| Bsa29I | ATCGAT | 1 cut(s) | 813 |
| BsaBI | GATNNNNATC | 2 cut(s) | 354, 2527 |
| BsaWI | WCCGGW | 2 cut(s) | 620, 3526 |
| Bse118I | RCCGGY | 1 cut(s) | 3526 |
| Bse1I | ACTGG | 8 cut(s) | 182, 1122, 1662, 2081, 2453, 3377, 4095, 4121 |
| Bse21I | CCTNAGG | 1 cut(s) | 3819 |
| Bse3DI | GCAATG | 2 cut(s) | 937, 3213 |
| Bse8I | GATNNNNATC | 2 cut(s) | 354, 2527 |
| BseCI | ATCGAT | 1 cut(s) | 813 |
| BseGI | GGATG | 6 cut(s) | 235, 1348, 1492, 2095, 2912, 3348 |
| BseJI | GATNNNNATC | 2 cut(s) | 354, 2527 |
| BseMI | GCAATG | 2 cut(s) | 937, 3213 |
| BseNI | ACTGG | 8 cut(s) | 182, 1122, 1662, 2081, 2453, 3377, 4095, 4121 |
| BseRI | GAGGAG | 7 cut(s) | 33, 872, 1278, 1561, 1674, 2157, 2157 |
| BseSI | GKGCMC | 2 cut(s) | 1891, 2046 |
| BseYI | CCCAGC | 1 cut(s) | 978 |
| BsgI | GTGCAG | 6 cut(s) | 676, 1125, 2652, 2988, 2988, 3842 |
| BshFI | GGCC | 7 cut(s) | 181, 983, 1494, 2243, 3540, 3632, 3681 |
| BshNI | GGYRCC | 2 cut(s) | 1127, 3529 |
| BshTI | ACCGGT | 1 cut(s) | 3526 |
| BshVI | ATCGAT | 1 cut(s) | 813 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1891, 2046 |
| BsiHKCI | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| BsiSI | CCGG | 6 cut(s) | 154, 621, 644, 1085, 2477, 3527 |
| BslFI | GGGAC | 4 cut(s) | 1692, 1817, 1836, 3105 |
| BsmAI | GTCTC | 5 cut(s) | 208, 257, 392, 2040, 2188 |
| BsmBI | CGTCTC | 1 cut(s) | 2188 |
| BsmFI | GGGAC | 4 cut(s) | 1692, 1817, 1836, 3105 |
| BsmI | GAATGC | 5 cut(s) | 808, 2272, 3784, 3910, 3979 |
| BsnI | GGCC | 7 cut(s) | 181, 983, 1494, 2243, 3540, 3632, 3681 |
| BsoBI | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| Bsp119I | TTCGAA | 1 cut(s) | 1585 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1891, 2046 |
| Bsp1407I | TGTACA | 2 cut(s) | 2112, 4128 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 538 |
| Bsp19I | CCATGG | 2 cut(s) | 2238, 3231 |
| BspACI | CCGC | 7 cut(s) | 9, 362, 854, 1480, 3854, 4073, 4222 |
| BspANI | GGCC | 7 cut(s) | 181, 983, 1494, 2243, 3540, 3632, 3681 |
| BspDI | ATCGAT | 1 cut(s) | 813 |
| BspHI | TCATGA | 2 cut(s) | 352, 1795 |
| BspLI | GGNNCC | 9 cut(s) | 269, 1129, 2235, 2460, 3093, 3531, 3687, 3816, 4227 |
| BspMAI | CTGCAG | 3 cut(s) | 595, 1834, 4221 |
| BspMI | ACCTGC | 2 cut(s) | 435, 584 |
| BspOI | GCTAGC | 1 cut(s) | 410 |
| BspT104I | TTCGAA | 1 cut(s) | 1585 |
| BspT107I | GGYRCC | 2 cut(s) | 1127, 3529 |
| BsrDI | GCAATG | 2 cut(s) | 937, 3213 |
| BsrFI | RCCGGY | 1 cut(s) | 3526 |
| BsrGI | TGTACA | 2 cut(s) | 2112, 4128 |
| BsrI | ACTGG | 8 cut(s) | 182, 1122, 1662, 2081, 2453, 3377, 4095, 4121 |
| BssAI | RCCGGY | 1 cut(s) | 3526 |
| BssT1I | CCWWGG | 9 cut(s) | 561, 893, 1314, 1422, 2238, 2337, 2729, 2916, 3231 |
| Bst6I | CTCTTC | 2 cut(s) | 501, 2134 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3914 |
| BstAUI | TGTACA | 2 cut(s) | 2112, 4128 |
| BstBI | TTCGAA | 1 cut(s) | 1585 |
| BstDSI | CCRYGG | 3 cut(s) | 1436, 2238, 3231 |
| BstEII | GGTNACC | 1 cut(s) | 4116 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1218, 2697, 4251 |
| BstF5I | GGATG | 6 cut(s) | 235, 1348, 1492, 2095, 2912, 3348 |
| BstMAI | GTCTC | 5 cut(s) | 208, 257, 392, 2040, 2188 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1452, 1782, 2978, 3745, 3862, 3914 |
| BstNSI | RCATGY | 5 cut(s) | 347, 1446, 1560, 2590, 4297 |
| BstPI | GGTNACC | 1 cut(s) | 4116 |
| BstSFI | CTRYAG | 6 cut(s) | 591, 1780, 1830, 2871, 2985, 4217 |
| BstSLI | GKGCMC | 2 cut(s) | 1891, 2046 |
| BstV2I | GAAGAC | 5 cut(s) | 905, 1390, 2400, 2435, 4250 |
| BstX2I | RGATCY | 8 cut(s) | 28, 67, 163, 952, 1745, 2458, 2522, 3685 |
| BstYI | RGATCY | 8 cut(s) | 28, 67, 163, 952, 1745, 2458, 2522, 3685 |
| Bsu15I | ATCGAT | 1 cut(s) | 813 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3819 |
| BsuI | GTATCC | 2 cut(s) | 2296, 2818 |
| BsuRI | GGCC | 7 cut(s) | 181, 983, 1494, 2243, 3540, 3632, 3681 |
| BsuTUI | ATCGAT | 1 cut(s) | 813 |
| BtgI | CCRYGG | 3 cut(s) | 1436, 2238, 3231 |
| BtsCI | GGATG | 6 cut(s) | 235, 1348, 1492, 2095, 2912, 3348 |
| BtsI | GCAGTG | 1 cut(s) | 1827 |
| BveI | ACCTGC | 2 cut(s) | 435, 584 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4090 |
| CciI | TCATGA | 2 cut(s) | 352, 1795 |
| Cfr10I | RCCGGY | 1 cut(s) | 3526 |
| Cfr13I | GGNCC | 7 cut(s) | 596, 981, 2702, 3092, 3285, 3758, 4226 |
| Cfr9I | CCCGGG | 1 cut(s) | 643 |
| ClaI | ATCGAT | 1 cut(s) | 813 |
| Csp6I | GTAC | 5 cut(s) | 291, 1273, 2113, 2313, 4129 |
| CspAI | ACCGGT | 1 cut(s) | 3526 |
| CviQI | GTAC | 5 cut(s) | 291, 1273, 2113, 2313, 4129 |
| DraI | TTTAAA | 1 cut(s) | 3171 |
| EaeI | YGGCCR | 2 cut(s) | 1492, 3538 |
| Eam1104I | CTCTTC | 2 cut(s) | 501, 2134 |
| EarI | CTCTTC | 2 cut(s) | 501, 2134 |
| EciI | GGCGGA | 1 cut(s) | 4062 |
| Eco130I | CCWWGG | 9 cut(s) | 561, 893, 1314, 1422, 2238, 2337, 2729, 2916, 3231 |
| Eco147I | AGGCCT | 1 cut(s) | 3632 |
| Eco32I | GATATC | 1 cut(s) | 3078 |
| Eco47I | GGWCC | 6 cut(s) | 596, 2702, 3092, 3285, 3758, 4226 |
| Eco57I | CTGAAG | 9 cut(s) | 413, 471, 558, 1065, 1878, 2670, 2814, 3046, 3198 |
| Eco81I | CCTNAGG | 1 cut(s) | 3819 |
| Eco88I | CYCGRG | 3 cut(s) | 643, 2221, 2267 |
| Eco91I | GGTNACC | 1 cut(s) | 4116 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1218, 2697, 4251 |
| EcoO109I | RGGNCCY | 4 cut(s) | 596, 3092, 3758, 4226 |
| EcoO65I | GGTNACC | 1 cut(s) | 4116 |
| EcoRI | GAATTC | 1 cut(s) | 745 |
| EcoRV | GATATC | 1 cut(s) | 3078 |
| EcoT14I | CCWWGG | 9 cut(s) | 561, 893, 1314, 1422, 2238, 2337, 2729, 2916, 3231 |
| EcoT22I | ATGCAT | 1 cut(s) | 3523 |
| ErhI | CCWWGG | 9 cut(s) | 561, 893, 1314, 1422, 2238, 2337, 2729, 2916, 3231 |
| Esp3I | CGTCTC | 1 cut(s) | 2188 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2790, 2822, 3028, 3060 |
| FaqI | GGGAC | 4 cut(s) | 1692, 1817, 1836, 3105 |
| FauI | CCCGC | 1 cut(s) | 4215 |
| FauNDI | CATATG | 1 cut(s) | 4263 |
| FbaI | TGATCA | 4 cut(s) | 54, 355, 1030, 3118 |
| FblI | GTMKAC | 1 cut(s) | 4271 |
| FokI | GGATG | 6 cut(s) | 242, 1355, 1499, 2102, 2899, 3335 |
| FspBI | CTAG | 8 cut(s) | 407, 1884, 2439, 2502, 2730, 2973, 3029, 4158 |
| GsaI | CCCAGC | 1 cut(s) | 982 |
| GsuI | CTGGAG | 2 cut(s) | 1900, 3605 |
| HaeIII | GGCC | 7 cut(s) | 181, 983, 1494, 2243, 3540, 3632, 3681 |
| HapII | CCGG | 6 cut(s) | 154, 621, 644, 1085, 2477, 3527 |
| HincII | GTYRAC | 2 cut(s) | 837, 3505 |
| HindII | GTYRAC | 2 cut(s) | 837, 3505 |
| HindIII | AAGCTT | 3 cut(s) | 414, 3766, 4138 |
| HpaI | GTTAAC | 1 cut(s) | 3505 |
| HpaII | CCGG | 6 cut(s) | 154, 621, 644, 1085, 2477, 3527 |
| HphI | GGTGA | 8 cut(s) | 2333, 2396, 2612, 2829, 3177, 3516, 3845, 4110 |
| Hpy166II | GTNNAC | 9 cut(s) | 837, 849, 1889, 2011, 2044, 2074, 3505, 3982, 4272 |
| Hpy8I | GTNNAC | 9 cut(s) | 837, 849, 1889, 2011, 2044, 2074, 3505, 3982, 4272 |
| Hpy99I | CGWCG | 1 cut(s) | 3204 |
| HpyCH4IV | ACGT | 4 cut(s) | 205, 2405, 2472, 3302 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1452, 1782, 2978, 3745, 3862, 3914 |
| HpySE526I | ACGT | 4 cut(s) | 205, 2405, 2472, 3302 |
| Ksp22I | TGATCA | 4 cut(s) | 54, 355, 1030, 3118 |
| KspAI | GTTAAC | 1 cut(s) | 3505 |
| LmnI | GCTCC | 4 cut(s) | 156, 520, 1451, 3884 |
| MaeI | CTAG | 8 cut(s) | 407, 1884, 2439, 2502, 2730, 2973, 3029, 4158 |
| MaeII | ACGT | 4 cut(s) | 205, 2405, 2472, 3302 |
| MfeI | CAATTG | 2 cut(s) | 1391, 2116 |
| MflI | RGATCY | 8 cut(s) | 28, 67, 163, 952, 1745, 2458, 2522, 3685 |
| MhlI | GDGCHC | 2 cut(s) | 1891, 2046 |
| MlsI | TGGCCA | 2 cut(s) | 1494, 3540 |
| MluNI | TGGCCA | 2 cut(s) | 1494, 3540 |
| MmeI | TCCRAC | 6 cut(s) | 402, 1444, 1674, 2579, 3312, 3611 |
| Mox20I | TGGCCA | 2 cut(s) | 1494, 3540 |
| Mph1103I | ATGCAT | 1 cut(s) | 3523 |
| MroXI | GAANNNNTTC | 4 cut(s) | 18, 970, 1591, 3317 |
| MscI | TGGCCA | 2 cut(s) | 1494, 3540 |
| MslI | CAYNNNNRTG | 3 cut(s) | 357, 3789, 3903 |
| Msp20I | TGGCCA | 2 cut(s) | 1494, 3540 |
| MspA1I | CMGCKG | 5 cut(s) | 11, 52, 2024, 3856, 4222 |
| MspI | CCGG | 6 cut(s) | 154, 621, 644, 1085, 2477, 3527 |
| MunI | CAATTG | 2 cut(s) | 1391, 2116 |
| Mva1269I | GAATGC | 5 cut(s) | 808, 2272, 3784, 3910, 3979 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1452, 1782, 2978, 3745, 3862, 3914 |
| NciI | CCSGG | 4 cut(s) | 154, 644, 645, 2478 |
| NcoI | CCATGG | 2 cut(s) | 2238, 3231 |
| NdeI | CATATG | 1 cut(s) | 4263 |
| NheI | GCTAGC | 1 cut(s) | 406 |
| NlaIV | GGNNCC | 9 cut(s) | 269, 1129, 2235, 2460, 3093, 3531, 3687, 3816, 4227 |
| NmeAIII | GCCGAG | 1 cut(s) | 2748 |
| NmuCI | GTSAC | 9 cut(s) | 1664, 1673, 1730, 1984, 2332, 3355, 3422, 4086, 4116 |
| NsiI | ATGCAT | 1 cut(s) | 3523 |
| NspI | RCATGY | 5 cut(s) | 347, 1446, 1560, 2590, 4297 |
| NspV | TTCGAA | 1 cut(s) | 1585 |
| PaeI | GCATGC | 1 cut(s) | 1446 |
| PaeR7I | CTCGAG | 1 cut(s) | 2221 |
| PagI | TCATGA | 2 cut(s) | 352, 1795 |
| PceI | AGGCCT | 1 cut(s) | 3632 |
| PciI | ACATGT | 2 cut(s) | 1556, 2586 |
| PctI | GAATGC | 5 cut(s) | 808, 2272, 3784, 3910, 3979 |
| PdmI | GAANNNNTTC | 4 cut(s) | 18, 970, 1591, 3317 |
| PfeI | GAWTC | 9 cut(s) | 2081, 2159, 2645, 2834, 2944, 3182, 3431, 3625, 4033 |
| PfoI | TCCNGGA | 1 cut(s) | 3610 |
| PinAI | ACCGGT | 1 cut(s) | 3526 |
| PpuMI | RGGWCCY | 4 cut(s) | 596, 3092, 3758, 4226 |
| PscI | ACATGT | 2 cut(s) | 1556, 2586 |
| PshBI | ATTAAT | 1 cut(s) | 2571 |
| Psp1406I | AACGTT | 2 cut(s) | 205, 3302 |
| Psp5II | RGGWCCY | 4 cut(s) | 596, 3092, 3758, 4226 |
| PspEI | GGTNACC | 1 cut(s) | 4116 |
| PspFI | CCCAGC | 1 cut(s) | 978 |
| PspN4I | GGNNCC | 9 cut(s) | 269, 1129, 2235, 2460, 3093, 3531, 3687, 3816, 4227 |
| PspPI | GGNCC | 7 cut(s) | 596, 981, 2702, 3092, 3285, 3758, 4226 |
| PspPPI | RGGWCCY | 4 cut(s) | 596, 3092, 3758, 4226 |
| PspXI | VCTCGAGB | 1 cut(s) | 2221 |
| PstI | CTGCAG | 3 cut(s) | 595, 1834, 4221 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4090 |
| PsuI | RGATCY | 8 cut(s) | 28, 67, 163, 952, 1745, 2458, 2522, 3685 |
| PvuII | CAGCTG | 2 cut(s) | 52, 2024 |
| RsaI | GTAC | 5 cut(s) | 292, 1274, 2114, 2314, 4130 |
| RsaNI | GTAC | 5 cut(s) | 291, 1273, 2113, 2313, 4129 |
| RseI | CAYNNNNRTG | 3 cut(s) | 357, 3789, 3903 |
| Sau96I | GGNCC | 7 cut(s) | 596, 981, 2702, 3092, 3285, 3758, 4226 |
| SduI | GDGCHC | 2 cut(s) | 1891, 2046 |
| SfcI | CTRYAG | 6 cut(s) | 591, 1780, 1830, 2871, 2985, 4217 |
| Sfr274I | CTCGAG | 1 cut(s) | 2221 |
| SfuI | TTCGAA | 1 cut(s) | 1585 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3526 |
| SinI | GGWCC | 6 cut(s) | 596, 2702, 3092, 3285, 3758, 4226 |
| SlaI | CTCGAG | 1 cut(s) | 2221 |
| SmaI | CCCGGG | 1 cut(s) | 645 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 357, 3789, 3903 |
| SmlI | CTYRAG | 6 cut(s) | 167, 2037, 2221, 2796, 3083, 3328 |
| SmoI | CTYRAG | 6 cut(s) | 167, 2037, 2221, 2796, 3083, 3328 |
| SphI | GCATGC | 1 cut(s) | 1446 |
| SseBI | AGGCCT | 1 cut(s) | 3632 |
| SsiI | CCGC | 7 cut(s) | 9, 362, 854, 1480, 3854, 4073, 4222 |
| SspI | AATATT | 2 cut(s) | 325, 1738 |
| SspMI | CTAG | 8 cut(s) | 407, 1884, 2439, 2502, 2730, 2973, 3029, 4158 |
| StuI | AGGCCT | 1 cut(s) | 3632 |
| StyI | CCWWGG | 9 cut(s) | 561, 893, 1314, 1422, 2238, 2337, 2729, 2916, 3231 |
| TaiI | ACGT | 4 cut(s) | 208, 2408, 2475, 3305 |
| TatI | WGTACW | 2 cut(s) | 2112, 4128 |
| TfiI | GAWTC | 9 cut(s) | 2081, 2159, 2645, 2834, 2944, 3182, 3431, 3625, 4033 |
| TseFI | GTSAC | 9 cut(s) | 1664, 1673, 1730, 1984, 2332, 3355, 3422, 4086, 4116 |
| Tsp45I | GTSAC | 9 cut(s) | 1664, 1673, 1730, 1984, 2332, 3355, 3422, 4086, 4116 |
| TspMI | CCCGGG | 1 cut(s) | 643 |
| VneI | GTGCAC | 2 cut(s) | 1887, 2042 |
| VpaK11BI | GGWCC | 6 cut(s) | 596, 2702, 3092, 3285, 3758, 4226 |
| VspI | ATTAAT | 1 cut(s) | 2571 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1218, 2697, 4251 |
| XceI | RCATGY | 5 cut(s) | 347, 1446, 1560, 2590, 4297 |
| XhoI | CTCGAG | 1 cut(s) | 2221 |
| XmaI | CCCGGG | 1 cut(s) | 643 |
| XmaJI | CCTAGG | 1 cut(s) | 2729 |
| XmiI | GTMKAC | 1 cut(s) | 4271 |
| XmnI | GAANNNNTTC | 4 cut(s) | 18, 970, 1591, 3317 |
| XspI | CTAG | 8 cut(s) | 407, 1884, 2439, 2502, 2730, 2973, 3029, 4158 |
| Zsp2I | ATGCAT | 1 cut(s) | 3523 |