expressed protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56240 AT5G56240 AT5G56240 AT5G56240 AT5G56250 AT5G56250 |
| fragaria_vesca | FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 FvH4_3g41530 |
| malus_domestica | MD03G1043400.v1.1 MD11G1046500.v1.1 |
| prunus_persica | Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 Prupe.6G035800_v2.0.a1 |
| pyrus_communis | pycom03g03360 pycom11g03790 |
| rosa_chinensis | RchiOBHm_Chr5g0074531 |
| rosa_laevigata | RLG00000036484 |
| rosa_multiflora | Rmu_sc0001467.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00007010 |
| rosa_rugosa | Rorug05G0432400 Rorug05G0432500.1 Rorug05G0432600 Rorug05G0432600 Rorug05G0432600 |
| rosa_samantha | Rh5AG489800 Rh5BG510600 Rh5CG534400 Rh5DG523100 |
| rosa_wichuraiana | Rw5G045400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3945 |
| Acc16I | TGCGCA | 1 cut(s) | 3414 |
| Acc36I | ACCTGC | 4 cut(s) | 432, 584, 3610, 3869 |
| AccB1I | GGYRCC | 1 cut(s) | 1024 |
| AccI | GTMKAC | 1 cut(s) | 1098 |
| AccII | CGCG | 3 cut(s) | 637, 1857, 3737 |
| AccIII | TCCGGA | 1 cut(s) | 3838 |
| AciI | CCGC | 8 cut(s) | 242, 1823, 1919, 1951, 2104, 3067, 3735, 3772 |
| AclWI | GGATC | 6 cut(s) | 23, 703, 2420, 2552, 2593, 4018 |
| AcoI | YGGCCR | 1 cut(s) | 2530 |
| AcsI | RAATTY | 9 cut(s) | 125, 199, 671, 1220, 1366, 1567, 1837, 2635, 3349 |
| AcuI | CTGAAG | 6 cut(s) | 468, 2786, 2877, 3458, 3903, 4083 |
| AcvI | CACGTG | 1 cut(s) | 2837 |
| AcyI | GRCGYC | 1 cut(s) | 1101 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 829, 1211, 1694, 3092, 3251, 3725 |
| AflII | CTTAAG | 1 cut(s) | 2182 |
| AflIII | ACRYGT | 1 cut(s) | 1349 |
| AgeI | ACCGGT | 2 cut(s) | 865, 3391 |
| AhlI | ACTAGT | 1 cut(s) | 77 |
| AjnI | CCWGG | 8 cut(s) | 1693, 1904, 2048, 2319, 2572, 2581, 3463, 4052 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 644, 676, 1919, 1951 |
| Alw21I | GWGCWC | 2 cut(s) | 1613, 3733 |
| Alw26I | GTCTC | 3 cut(s) | 167, 413, 1491 |
| AlwI | GGATC | 6 cut(s) | 23, 703, 2420, 2552, 2593, 4018 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2903 |
| Ama87I | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| Aor13HI | TCCGGA | 1 cut(s) | 3838 |
| AoxI | GGCC | 9 cut(s) | 182, 524, 978, 2211, 2317, 2530, 2576, 2822, 2827 |
| ApoI | RAATTY | 9 cut(s) | 125, 199, 671, 1220, 1366, 1567, 1837, 2635, 3349 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 512, 544 |
| AseI | ATTAAT | 2 cut(s) | 2865, 3062 |
| AsiGI | ACCGGT | 2 cut(s) | 865, 3391 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 18, 3482 |
| AspA2I | CCTAGG | 1 cut(s) | 2603 |
| AspLEI | GCGC | 4 cut(s) | 1248, 1859, 3415, 3541 |
| AspS9I | GGNCC | 8 cut(s) | 596, 978, 1085, 2576, 2795, 2827, 2963, 3599 |
| AsuC2I | CCSGG | 5 cut(s) | 157, 340, 1206, 2826, 4124 |
| AsuII | TTCGAA | 2 cut(s) | 2110, 3248 |
| AsuNHI | GCTAGC | 2 cut(s) | 1859, 4057 |
| AvaI | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| AvaII | GGWCC | 5 cut(s) | 596, 1085, 2795, 2963, 3599 |
| AvrII | CCTAGG | 1 cut(s) | 2603 |
| AxyI | CCTNAGG | 2 cut(s) | 1311, 2550 |
| BaeGI | GKGCMC | 1 cut(s) | 1852 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2265, 2298, 3369, 3402 |
| BalI | TGGCCA | 1 cut(s) | 2532 |
| BanI | GGYRCC | 1 cut(s) | 1024 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1164, 1196 |
| BauI | CACGAG | 3 cut(s) | 982, 2650, 3594 |
| BbrPI | CACGTG | 1 cut(s) | 2837 |
| BbsI | GAAGAC | 2 cut(s) | 360, 902 |
| Bbv12I | GWGCWC | 2 cut(s) | 1613, 3733 |
| BceAI | ACGGC | 3 cut(s) | 511, 523, 3688 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 151, 185, 692, 726, 4128, 4162 |
| BciT130I | CCWGG | 8 cut(s) | 1695, 1906, 2050, 2321, 2574, 2583, 3465, 4054 |
| BciVI | GTATCC | 3 cut(s) | 1063, 2149, 2266 |
| BclI | TGATCA | 5 cut(s) | 57, 349, 814, 1510, 2065 |
| BcnI | CCSGG | 5 cut(s) | 157, 340, 1206, 2826, 4124 |
| BcoDI | GTCTC | 3 cut(s) | 167, 413, 1491 |
| BcuI | ACTAGT | 1 cut(s) | 77 |
| BfaI | CTAG | 9 cut(s) | 72, 78, 95, 1641, 1860, 2193, 2486, 2604, 4058 |
| BfmI | CTRYAG | 4 cut(s) | 591, 2874, 3562, 3862 |
| BfoI | RGCGCY | 1 cut(s) | 1249 |
| BfrI | CTTAAG | 1 cut(s) | 2182 |
| BfuAI | ACCTGC | 4 cut(s) | 432, 584, 3610, 3869 |
| BfuI | GTATCC | 3 cut(s) | 1063, 2149, 2266 |
| BglII | AGATCT | 5 cut(s) | 97, 949, 1297, 3194, 4166 |
| BlnI | CCTAGG | 1 cut(s) | 2603 |
| BlpI | GCTNAGC | 1 cut(s) | 1996 |
| BmcAI | AGTACT | 3 cut(s) | 76, 582, 3878 |
| Bme18I | GGWCC | 5 cut(s) | 596, 1085, 2795, 2963, 3599 |
| BmeT110I | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| BmgT120I | GGNCC | 8 cut(s) | 596, 978, 1085, 2576, 2795, 2827, 2963, 3599 |
| BmiI | GGNNCC | 6 cut(s) | 598, 1026, 2179, 2964, 3657, 3993 |
| BmrI | ACTGGG | 2 cut(s) | 1971, 3933 |
| BmsI | GCATC | 9 cut(s) | 58, 250, 578, 1132, 1186, 1720, 1876, 3631, 3656 |
| BmtI | GCTAGC | 2 cut(s) | 1863, 4061 |
| BmuI | ACTGGG | 2 cut(s) | 1971, 3933 |
| BpiI | GAAGAC | 2 cut(s) | 360, 902 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 472, 504, 3007, 3039 |
| BpmI | CTGGAG | 3 cut(s) | 1437, 3243, 4036 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2808 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1996 |
| Bpu14I | TTCGAA | 2 cut(s) | 2110, 3248 |
| BpuEI | CTTGAG | 2 cut(s) | 1620, 2655 |
| BpuMI | CCSGG | 5 cut(s) | 157, 340, 1206, 2826, 4124 |
| BsaAI | YACGTR | 1 cut(s) | 2837 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2298 |
| BsaHI | GRCGYC | 1 cut(s) | 1101 |
| BsaI | GGTCTC | 1 cut(s) | 167 |
| BsaWI | WCCGGW | 4 cut(s) | 623, 865, 3391, 3838 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2155, 2185, 3131, 3161 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 829, 1211, 1694, 3092, 3251, 3725 |
| Bse118I | RCCGGY | 3 cut(s) | 865, 1027, 3391 |
| Bse21I | CCTNAGG | 2 cut(s) | 1311, 2550 |
| Bse3DI | GCAATG | 2 cut(s) | 934, 3081 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2298 |
| BseAI | TCCGGA | 1 cut(s) | 3838 |
| BseBI | CCWGG | 8 cut(s) | 1695, 1906, 2050, 2321, 2574, 2583, 3465, 4054 |
| BseJI | GATNNNNATC | 1 cut(s) | 2298 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 829, 1211, 1694, 3092, 3251, 3725 |
| BseMI | GCAATG | 2 cut(s) | 934, 3081 |
| BseRI | GAGGAG | 3 cut(s) | 1275, 2176, 3741 |
| BseSI | GKGCMC | 1 cut(s) | 1852 |
| BseYI | CCCAGC | 3 cut(s) | 48, 930, 975 |
| BsgI | GTGCAG | 5 cut(s) | 676, 2859, 3416, 3555, 4136 |
| Bsh1236I | CGCG | 3 cut(s) | 637, 1857, 3737 |
| BshFI | GGCC | 9 cut(s) | 184, 526, 980, 2213, 2319, 2532, 2578, 2824, 2829 |
| BshNI | GGYRCC | 1 cut(s) | 1024 |
| BshTI | ACCGGT | 2 cut(s) | 865, 3391 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1613, 3733 |
| BsiHKCI | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| BslFI | GGGAC | 4 cut(s) | 582, 1959, 2764, 2976 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 829, 1211, 1694, 3092, 3251, 3725 |
| BsmAI | GTCTC | 3 cut(s) | 167, 413, 1491 |
| BsmFI | GGGAC | 4 cut(s) | 582, 1959, 2764, 2976 |
| BsmI | GAATGC | 4 cut(s) | 724, 808, 1624, 2770 |
| BsnI | GGCC | 9 cut(s) | 184, 526, 980, 2213, 2319, 2532, 2578, 2824, 2829 |
| Bso31I | GGTCTC | 1 cut(s) | 167 |
| BsoBI | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| Bsp119I | TTCGAA | 2 cut(s) | 2110, 3248 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1613, 1852, 3733 |
| Bsp13I | TCCGGA | 1 cut(s) | 3838 |
| Bsp1407I | TGTACA | 1 cut(s) | 4023 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1996 |
| Bsp19I | CCATGG | 3 cut(s) | 2208, 3090, 3651 |
| BspACI | CCGC | 8 cut(s) | 242, 1823, 1919, 1951, 2104, 3067, 3735, 3772 |
| BspANI | GGCC | 9 cut(s) | 184, 526, 980, 2213, 2319, 2532, 2578, 2824, 2829 |
| BspEI | TCCGGA | 1 cut(s) | 3838 |
| BspFNI | CGCG | 3 cut(s) | 637, 1857, 3737 |
| BspHI | TCATGA | 2 cut(s) | 82, 3661 |
| BspLI | GGNNCC | 6 cut(s) | 598, 1026, 2179, 2964, 3657, 3993 |
| BspMAI | CTGCAG | 3 cut(s) | 595, 2878, 3866 |
| BspMI | ACCTGC | 4 cut(s) | 432, 584, 3610, 3869 |
| BspOI | GCTAGC | 2 cut(s) | 1863, 4061 |
| BspPI | GGATC | 6 cut(s) | 23, 703, 2420, 2552, 2593, 4018 |
| BspQI | GCTCTTC | 1 cut(s) | 1386 |
| BspT104I | TTCGAA | 2 cut(s) | 2110, 3248 |
| BspT107I | GGYRCC | 1 cut(s) | 1024 |
| BspTI | CTTAAG | 1 cut(s) | 2182 |
| BspTNI | GGTCTC | 1 cut(s) | 167 |
| BsrDI | GCAATG | 2 cut(s) | 934, 3081 |
| BsrFI | RCCGGY | 3 cut(s) | 865, 1027, 3391 |
| BsrGI | TGTACA | 1 cut(s) | 4023 |
| BssAI | RCCGGY | 3 cut(s) | 865, 1027, 3391 |
| BssNI | GRCGYC | 1 cut(s) | 1101 |
| BssSI | CACGAG | 3 cut(s) | 982, 2650, 3594 |
| BssT1I | CCWWGG | 8 cut(s) | 558, 1664, 2208, 2214, 2533, 2603, 3090, 3651 |
| Bst2BI | CACGAG | 3 cut(s) | 982, 2650, 3594 |
| Bst2UI | CCWGG | 8 cut(s) | 1695, 1906, 2050, 2321, 2574, 2583, 3465, 4054 |
| Bst6I | CTCTTC | 4 cut(s) | 498, 1029, 1042, 1386 |
| BstACI | GRCGYC | 1 cut(s) | 1101 |
| BstAFI | CTTAAG | 1 cut(s) | 2182 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3086 |
| BstAUI | TGTACA | 1 cut(s) | 4023 |
| BstBAI | YACGTR | 1 cut(s) | 2837 |
| BstBI | TTCGAA | 2 cut(s) | 2110, 3248 |
| BstDSI | CCRYGG | 3 cut(s) | 2208, 3090, 3651 |
| BstEII | GGTNACC | 1 cut(s) | 2938 |
| BstFNI | CGCG | 3 cut(s) | 637, 1857, 3737 |
| BstH2I | RGCGCY | 1 cut(s) | 1249 |
| BstHHI | GCGC | 4 cut(s) | 1248, 1859, 3415, 3541 |
| BstMAI | GTCTC | 3 cut(s) | 167, 413, 1491 |
| BstNI | CCWGG | 8 cut(s) | 1695, 1906, 2050, 2321, 2574, 2583, 3465, 4054 |
| BstNSI | RCATGY | 4 cut(s) | 1353, 1484, 1626, 4043 |
| BstPI | GGTNACC | 1 cut(s) | 2938 |
| BstSFI | CTRYAG | 4 cut(s) | 591, 2874, 3562, 3862 |
| BstSLI | GKGCMC | 1 cut(s) | 1852 |
| BstUI | CGCG | 3 cut(s) | 637, 1857, 3737 |
| BstV2I | GAAGAC | 2 cut(s) | 360, 902 |
| BstX2I | RGATCY | 6 cut(s) | 28, 97, 949, 1297, 3194, 4166 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 907, 2215 |
| BstYI | RGATCY | 6 cut(s) | 28, 97, 949, 1297, 3194, 4166 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1311, 2550 |
| BsuI | GTATCC | 3 cut(s) | 1063, 2149, 2266 |
| BsuRI | GGCC | 9 cut(s) | 184, 526, 980, 2213, 2319, 2532, 2578, 2824, 2829 |
| BtgI | CCRYGG | 3 cut(s) | 2208, 3090, 3651 |
| BtgZI | GCGATG | 2 cut(s) | 2139, 4131 |
| BtsI | GCAGTG | 3 cut(s) | 2871, 3080, 3871 |
| BveI | ACCTGC | 4 cut(s) | 432, 584, 3610, 3869 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2903 |
| CciI | TCATGA | 2 cut(s) | 82, 3661 |
| CfoI | GCGC | 4 cut(s) | 1248, 1859, 3415, 3541 |
| Cfr10I | RCCGGY | 3 cut(s) | 865, 1027, 3391 |
| Cfr13I | GGNCC | 8 cut(s) | 596, 978, 1085, 2576, 2795, 2827, 2963, 3599 |
| CseI | GACGC | 4 cut(s) | 643, 702, 1109, 3536 |
| CspAI | ACCGGT | 2 cut(s) | 865, 3391 |
| DraI | TTTAAA | 1 cut(s) | 3039 |
| EaeI | YGGCCR | 1 cut(s) | 2530 |
| Eam1104I | CTCTTC | 4 cut(s) | 498, 1029, 1042, 1386 |
| EarI | CTCTTC | 4 cut(s) | 498, 1029, 1042, 1386 |
| Eco130I | CCWWGG | 8 cut(s) | 558, 1664, 2208, 2214, 2533, 2603, 3090, 3651 |
| Eco31I | GGTCTC | 1 cut(s) | 167 |
| Eco32I | GATATC | 3 cut(s) | 169, 2611, 2949 |
| Eco47I | GGWCC | 5 cut(s) | 596, 1085, 2795, 2963, 3599 |
| Eco57I | CTGAAG | 6 cut(s) | 468, 2786, 2877, 3458, 3903, 4083 |
| Eco72I | CACGTG | 1 cut(s) | 2837 |
| Eco81I | CCTNAGG | 2 cut(s) | 1311, 2550 |
| Eco88I | CYCGRG | 5 cut(s) | 643, 970, 1005, 2954, 4108 |
| Eco91I | GGTNACC | 1 cut(s) | 2938 |
| EcoO109I | RGGNCCY | 4 cut(s) | 596, 2795, 2963, 3599 |
| EcoO65I | GGTNACC | 1 cut(s) | 2938 |
| EcoRI | GAATTC | 1 cut(s) | 2635 |
| EcoRII | CCWGG | 8 cut(s) | 1693, 1904, 2048, 2319, 2572, 2581, 3463, 4052 |
| EcoRV | GATATC | 3 cut(s) | 169, 2611, 2949 |
| EcoT14I | CCWWGG | 8 cut(s) | 558, 1664, 2208, 2214, 2533, 2603, 3090, 3651 |
| EcoT22I | ATGCAT | 2 cut(s) | 1624, 2088 |
| ErhI | CCWWGG | 8 cut(s) | 558, 1664, 2208, 2214, 2533, 2603, 3090, 3651 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1180, 1212, 2664, 2696, 2899, 2931, 3286, 3318 |
| FaqI | GGGAC | 4 cut(s) | 582, 1959, 2764, 2976 |
| FauI | CCCGC | 3 cut(s) | 1926, 1944, 3742 |
| FauNDI | CATATG | 1 cut(s) | 3744 |
| FbaI | TGATCA | 5 cut(s) | 57, 349, 814, 1510, 2065 |
| FblI | GTMKAC | 1 cut(s) | 1098 |
| FspBI | CTAG | 9 cut(s) | 72, 78, 95, 1641, 1860, 2193, 2486, 2604, 4058 |
| FspI | TGCGCA | 1 cut(s) | 3414 |
| GlaI | GCGC | 4 cut(s) | 1247, 1858, 3414, 3540 |
| GsaI | CCCAGC | 3 cut(s) | 52, 934, 979 |
| GsuI | CTGGAG | 3 cut(s) | 1437, 3243, 4036 |
| HaeII | RGCGCY | 1 cut(s) | 1249 |
| HaeIII | GGCC | 9 cut(s) | 184, 526, 980, 2213, 2319, 2532, 2578, 2824, 2829 |
| HgaI | GACGC | 4 cut(s) | 643, 702, 1109, 3536 |
| HhaI | GCGC | 4 cut(s) | 1248, 1859, 3415, 3541 |
| Hin1I | GRCGYC | 1 cut(s) | 1101 |
| Hin6I | GCGC | 4 cut(s) | 1246, 1857, 3413, 3539 |
| HinP1I | GCGC | 4 cut(s) | 1246, 1857, 3413, 3539 |
| HincII | GTYRAC | 3 cut(s) | 616, 3005, 3364 |
| HindII | GTYRAC | 3 cut(s) | 616, 3005, 3364 |
| HindIII | AAGCTT | 4 cut(s) | 254, 408, 994, 3607 |
| HpaI | GTTAAC | 1 cut(s) | 616 |
| Hpy166II | GTNNAC | 6 cut(s) | 229, 616, 1099, 1780, 3005, 3364 |
| Hpy8I | GTNNAC | 6 cut(s) | 229, 616, 1099, 1780, 3005, 3364 |
| Hpy99I | CGWCG | 3 cut(s) | 532, 637, 718 |
| HpyCH4IV | ACGT | 1 cut(s) | 2836 |
| HpySE526I | ACGT | 1 cut(s) | 2836 |
| Hsp92I | GRCGYC | 1 cut(s) | 1101 |
| HspAI | GCGC | 4 cut(s) | 1246, 1857, 3413, 3539 |
| Kpn2I | TCCGGA | 1 cut(s) | 3838 |
| Ksp22I | TGATCA | 5 cut(s) | 57, 349, 814, 1510, 2065 |
| KspAI | GTTAAC | 1 cut(s) | 616 |
| LguI | GCTCTTC | 1 cut(s) | 1386 |
| LmnI | GCTCC | 7 cut(s) | 159, 1288, 1418, 1445, 1608, 3728, 3940 |
| LweI | GCATC | 9 cut(s) | 58, 250, 578, 1132, 1186, 1720, 1876, 3631, 3656 |
| MaeI | CTAG | 9 cut(s) | 72, 78, 95, 1641, 1860, 2193, 2486, 2604, 4058 |
| MaeII | ACGT | 1 cut(s) | 2836 |
| MfeI | CAATTG | 1 cut(s) | 1809 |
| MflI | RGATCY | 6 cut(s) | 28, 97, 949, 1297, 3194, 4166 |
| MhlI | GDGCHC | 3 cut(s) | 1613, 1852, 3733 |
| MlsI | TGGCCA | 1 cut(s) | 2532 |
| MluNI | TGGCCA | 1 cut(s) | 2532 |
| MlyI | GAGTC | 6 cut(s) | 515, 1888, 2513, 3149, 3155, 3992 |
| MmeI | TCCRAC | 3 cut(s) | 2444, 2598, 3467 |
| Mox20I | TGGCCA | 1 cut(s) | 2532 |
| Mph1103I | ATGCAT | 2 cut(s) | 1624, 2088 |
| MroI | TCCGGA | 1 cut(s) | 3838 |
| MroXI | GAANNNNTTC | 2 cut(s) | 18, 3482 |
| MscI | TGGCCA | 1 cut(s) | 2532 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1068, 2355, 3630 |
| Msp20I | TGGCCA | 1 cut(s) | 2532 |
| MspA1I | CMGCKG | 2 cut(s) | 2000, 2903 |
| MspCI | CTTAAG | 1 cut(s) | 2182 |
| MunI | CAATTG | 1 cut(s) | 1809 |
| Mva1269I | GAATGC | 4 cut(s) | 724, 808, 1624, 2770 |
| MvaI | CCWGG | 8 cut(s) | 1695, 1906, 2050, 2321, 2574, 2583, 3465, 4054 |
| MvnI | CGCG | 3 cut(s) | 637, 1857, 3737 |
| NciI | CCSGG | 5 cut(s) | 157, 340, 1206, 2826, 4124 |
| NcoI | CCATGG | 3 cut(s) | 2208, 3090, 3651 |
| NdeI | CATATG | 1 cut(s) | 3744 |
| NheI | GCTAGC | 2 cut(s) | 1859, 4057 |
| NlaIV | GGNNCC | 6 cut(s) | 598, 1026, 2179, 2964, 3657, 3993 |
| NmeAIII | GCCGAG | 2 cut(s) | 915, 2681 |
| NmuCI | GTSAC | 8 cut(s) | 1652, 2357, 2640, 2938, 3217, 3236, 3284, 3984 |
| NsbI | TGCGCA | 1 cut(s) | 3414 |
| NsiI | ATGCAT | 2 cut(s) | 1624, 2088 |
| NspI | RCATGY | 4 cut(s) | 1353, 1484, 1626, 4043 |
| NspV | TTCGAA | 2 cut(s) | 2110, 3248 |
| PaeI | GCATGC | 1 cut(s) | 4043 |
| PaeR7I | CTCGAG | 2 cut(s) | 970, 2954 |
| PagI | TCATGA | 2 cut(s) | 82, 3661 |
| PasI | CCCWGGG | 1 cut(s) | 2573 |
| PciI | ACATGT | 1 cut(s) | 1349 |
| PciSI | GCTCTTC | 1 cut(s) | 1386 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 524, 536 |
| PctI | GAATGC | 4 cut(s) | 724, 808, 1624, 2770 |
| PdmI | GAANNNNTTC | 2 cut(s) | 18, 3482 |
| PfoI | TCCNGGA | 1 cut(s) | 155 |
| PinAI | ACCGGT | 2 cut(s) | 865, 3391 |
| PleI | GAGTC | 6 cut(s) | 514, 1887, 2513, 3148, 3155, 3991 |
| PmaCI | CACGTG | 1 cut(s) | 2837 |
| PmlI | CACGTG | 1 cut(s) | 2837 |
| PpsI | GAGTC | 6 cut(s) | 514, 1887, 2513, 3148, 3155, 3991 |
| Ppu21I | YACGTR | 1 cut(s) | 2837 |
| PpuMI | RGGWCCY | 4 cut(s) | 596, 2795, 2963, 3599 |
| PscI | ACATGT | 1 cut(s) | 1349 |
| PshBI | ATTAAT | 2 cut(s) | 2865, 3062 |
| PsiI | TTATAA | 1 cut(s) | 3945 |
| Psp5II | RGGWCCY | 4 cut(s) | 596, 2795, 2963, 3599 |
| Psp6I | CCWGG | 8 cut(s) | 1693, 1904, 2048, 2319, 2572, 2581, 3463, 4052 |
| PspCI | CACGTG | 1 cut(s) | 2837 |
| PspEI | GGTNACC | 1 cut(s) | 2938 |
| PspFI | CCCAGC | 3 cut(s) | 48, 930, 975 |
| PspGI | CCWGG | 8 cut(s) | 1693, 1904, 2048, 2319, 2572, 2581, 3463, 4052 |
| PspN4I | GGNNCC | 6 cut(s) | 598, 1026, 2179, 2964, 3657, 3993 |
| PspPI | GGNCC | 8 cut(s) | 596, 978, 1085, 2576, 2795, 2827, 2963, 3599 |
| PspPPI | RGGWCCY | 4 cut(s) | 596, 2795, 2963, 3599 |
| PspXI | VCTCGAGB | 1 cut(s) | 970 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3984, 4016 |
| PstI | CTGCAG | 3 cut(s) | 595, 2878, 3866 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2903 |
| PsuI | RGATCY | 6 cut(s) | 28, 97, 949, 1297, 3194, 4166 |
| PvuII | CAGCTG | 2 cut(s) | 2000, 2903 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1068, 2355, 3630 |
| SapI | GCTCTTC | 1 cut(s) | 1386 |
| Sau96I | GGNCC | 8 cut(s) | 596, 978, 1085, 2576, 2795, 2827, 2963, 3599 |
| ScaI | AGTACT | 3 cut(s) | 76, 582, 3878 |
| SchI | GAGTC | 6 cut(s) | 515, 1888, 2513, 3149, 3155, 3992 |
| SduI | GDGCHC | 3 cut(s) | 1613, 1852, 3733 |
| SfaNI | GCATC | 9 cut(s) | 58, 250, 578, 1132, 1186, 1720, 1876, 3631, 3656 |
| SfcI | CTRYAG | 4 cut(s) | 591, 2874, 3562, 3862 |
| Sfr274I | CTCGAG | 2 cut(s) | 970, 2954 |
| SfuI | TTCGAA | 2 cut(s) | 2110, 3248 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3391 |
| SinI | GGWCC | 5 cut(s) | 596, 1085, 2795, 2963, 3599 |
| SlaI | CTCGAG | 2 cut(s) | 970, 2954 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1068, 2355, 3630 |
| SmlI | CTYRAG | 5 cut(s) | 970, 1635, 2182, 2670, 2954 |
| SmoI | CTYRAG | 5 cut(s) | 970, 1635, 2182, 2670, 2954 |
| SpeI | ACTAGT | 1 cut(s) | 77 |
| SphI | GCATGC | 1 cut(s) | 4043 |
| SsiI | CCGC | 8 cut(s) | 242, 1823, 1919, 1951, 2104, 3067, 3735, 3772 |
| SspMI | CTAG | 9 cut(s) | 72, 78, 95, 1641, 1860, 2193, 2486, 2604, 4058 |
| StyI | CCWWGG | 8 cut(s) | 558, 1664, 2208, 2214, 2533, 2603, 3090, 3651 |
| TaiI | ACGT | 1 cut(s) | 2839 |
| TaqII | GACCGA | 1 cut(s) | 1073 |
| TatI | WGTACW | 5 cut(s) | 74, 580, 3876, 4023, 4091 |
| TauI | GCSGC | 2 cut(s) | 244, 3070 |
| TseFI | GTSAC | 8 cut(s) | 1652, 2357, 2640, 2938, 3217, 3236, 3284, 3984 |
| Tsp45I | GTSAC | 8 cut(s) | 1652, 2357, 2640, 2938, 3217, 3236, 3284, 3984 |
| TspGWI | ACGGA | 1 cut(s) | 3904 |
| Vha464I | CTTAAG | 1 cut(s) | 2182 |
| VpaK11BI | GGWCC | 5 cut(s) | 596, 1085, 2795, 2963, 3599 |
| VspI | ATTAAT | 2 cut(s) | 2865, 3062 |
| XapI | RAATTY | 9 cut(s) | 125, 199, 671, 1220, 1366, 1567, 1837, 2635, 3349 |
| XbaI | TCTAGA | 1 cut(s) | 2192 |
| XceI | RCATGY | 4 cut(s) | 1353, 1484, 1626, 4043 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 850, 907, 2888, 3782 |
| XhoI | CTCGAG | 2 cut(s) | 970, 2954 |
| XmaJI | CCTAGG | 1 cut(s) | 2603 |
| XmiI | GTMKAC | 1 cut(s) | 1098 |
| XmnI | GAANNNNTTC | 2 cut(s) | 18, 3482 |
| XspI | CTAG | 9 cut(s) | 72, 78, 95, 1641, 1860, 2193, 2486, 2604, 4058 |
| ZrmI | AGTACT | 3 cut(s) | 76, 582, 3878 |
| Zsp2I | ATGCAT | 2 cut(s) | 1624, 2088 |