Rorug05G0432600

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002524
Physical Location & Seq
Forward (+)
60174186 .. 60179213
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0432600.1

Sequence Viewer

Length: 876 bp
ATGGTTCTGATGAAGGAATTTCGTATTGTGATGCCCATGTCTCTAGAAGAGTATCAAGTTGCTCAGGCATATATGGTCACAAAGATGCAGCAACAGAACACGAATAGTACGGAAGGGGTGGAAATTTTAGAGAATAAATCCTTTGAAGATGATGTCTTTGGAAAGGGTCAATACACTTCTAAGGTTTATCGTCTACAAAGCAAAGCTCCTACTTGGCTTACAACTTTTGCACCAGCAGATGCACTCATCATGCAAGAGGAAGCCTGGAACGCATACCCAAGATGCAAAACAGTAATCAAGTGCCCATACTTCACCAAATTTCAGTTGACCATTGAAACTGTTCATAGGGCTGATAATGGTCAGTCCGAAAATGTACATGGTCTAAGCAAAGAAATATTAGCAGCCAGGGATGTGGAAATTGTTGATATAGCTTCATCTGCAAGGGATTACTGGAGTTACGTGGTTGGTAGTAACAATACAGACTTCTCTAATTTTAAATCAGAGAAGACTGGCCGTGGTCCACTTTTAGAGGGATGGCAGGATACGTCAAGTCCAGTTATGACAGCCTACAAGTTGGTCACCATAGATGCGCCATATTGGGGATTTGGCTATAAACTTGAACAAGCTTTGCTATTGGGTGAAAGGGCTCTTTTCCTTGAAAGTCACCGCAATTGTTTTGCTTGGATAGATGAATGGTTTGGAATGACTATGCAACATCTACGTGAACTTGATCAACAAAGCGACTCATTAGCTGAGAAACATGGGAGGCCAACTTTGGTGAAGAGCATGGACGATTTTGGCCAGAGATTATCACCCGAAAATGAAGACATTTATCTTGGCCAGAGGTCTCAACTCTCAACTCAACTATCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.34

Weight (kDa)

5.1

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IP_trans PF02121 2 - 246 5.1e-94 Phosphatidylinositol transfer protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 667
AcoI YGGCCR 3 cut(s) 511, 799, 838
AcsI RAATTY 3 cut(s) 17, 123, 317
AfaI GTAC 2 cut(s) 109, 375
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 4 cut(s) 146, 335, 620, 659
AjnI CCWGG 2 cut(s) 263, 404
AluBI AGCT 4 cut(s) 206, 431, 626, 752
AluI AGCT 4 cut(s) 206, 431, 626, 752
Alw26I GTCTC 2 cut(s) 45, 852
AoxI GGCC 4 cut(s) 511, 767, 799, 838
ApeKI GCWGC 2 cut(s) 88, 401
ApoI RAATTY 3 cut(s) 17, 123, 317
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 6 cut(s) 304, 571, 650, 656, 790, 804
AvaII GGWCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 2 cut(s) 801, 840
BanII GRGCYC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 512, 831
BbvI GCAGC 2 cut(s) 100, 413
BccI CCATC 1 cut(s) 528
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 2 cut(s) 265, 406
BciVI GTATCC 1 cut(s) 535
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 2 cut(s) 45, 852
BfaI CTAG 1 cut(s) 44
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 2 cut(s) 89, 402
BlsI GCNGC 2 cut(s) 90, 403
Bme1390I CCNGG 2 cut(s) 265, 406
Bme18I GGWCC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 265, 406
BmsI GCATC 5 cut(s) 21, 75, 229, 272, 577
BpiI GAAGAC 2 cut(s) 512, 831
BpmI CTGGAG 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 63
BsaAI YACGTR 2 cut(s) 460, 722
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 405, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse1I ACTGG 3 cut(s) 455, 514, 554
BseBI CCWGG 2 cut(s) 265, 406
BseDI CCNNGG 2 cut(s) 405, 514
BseGI GGATG 2 cut(s) 415, 539
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 2 cut(s) 77, 744
BseNI ACTGG 3 cut(s) 455, 514, 554
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 100, 413
BshFI GGCC 4 cut(s) 513, 769, 801, 840
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 2 cut(s) 45, 852
BsnI GGCC 4 cut(s) 513, 769, 801, 840
Bso31I GGTCTC 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 305, 649
Bsp1407I TGTACA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 730
BspACI CCGC 1 cut(s) 667
BspANI GGCC 4 cut(s) 513, 769, 801, 840
BspCNI CTCAG 2 cut(s) 76, 745
BspQI GCTCTTC 1 cut(s) 776
BspTNI GGTCTC 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 373
BsrI ACTGG 3 cut(s) 455, 514, 554
BssECI CCNNGG 2 cut(s) 405, 514
BssMI GATC 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 265, 406
Bst4CI ACNGT 2 cut(s) 292, 340
Bst6I CTCTTC 2 cut(s) 42, 776
BstAUI TGTACA 1 cut(s) 373
BstBAI YACGTR 2 cut(s) 460, 722
BstDEI CTNAG 4 cut(s) 63, 180, 383, 753
BstDSI CCRYGG 1 cut(s) 514
BstEII GGTNACC 1 cut(s) 577
BstF5I GGATG 2 cut(s) 415, 539
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 2 cut(s) 45, 852
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 2 cut(s) 269, 437
BstNI CCWGG 2 cut(s) 265, 406
BstPI GGTNACC 1 cut(s) 577
BstSCI CCNGG 2 cut(s) 263, 404
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 100, 413
BstV2I GAAGAC 2 cut(s) 512, 831
BstXI CCANNNNNNTGG 1 cut(s) 412
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 4 cut(s) 513, 769, 801, 840
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 415, 539
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 518
Csp6I GTAC 2 cut(s) 108, 374
CviAII CATG 5 cut(s) 37, 250, 377, 761, 787
CviQI GTAC 2 cut(s) 108, 374
DdeI CTNAG 4 cut(s) 63, 180, 383, 753
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
DraI TTTAAA 1 cut(s) 496
EaeI YGGCCR 3 cut(s) 511, 799, 838
Eam1104I CTCTTC 2 cut(s) 42, 776
EarI CTCTTC 2 cut(s) 42, 776
Eco24I GRGCYC 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 518
Eco91I GGTNACC 1 cut(s) 577
EcoO65I GGTNACC 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 263, 404
EcoT38I GRGCYC 1 cut(s) 649
FaeI CATG 5 cut(s) 40, 253, 380, 764, 790
FatI CATG 5 cut(s) 36, 249, 376, 760, 786
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 89, 402
FokI GGATG 2 cut(s) 422, 546
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 2 cut(s) 89, 402
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 591
GluI GCNGC 2 cut(s) 89, 402
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 4 cut(s) 513, 769, 801, 840
HhaI GCGC 1 cut(s) 592
Hin1II CATG 5 cut(s) 40, 253, 380, 764, 790
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 1 cut(s) 743
HphI GGTGA 6 cut(s) 304, 571, 650, 656, 790, 804
Hpy166II GTNNAC 4 cut(s) 194, 327, 521, 725
Hpy188I TCNGA 3 cut(s) 9, 367, 502
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 4 cut(s) 194, 327, 521, 725
HpyAV CCTTC 2 cut(s) 7, 107
HpyCH4III ACNGT 2 cut(s) 292, 340
HpyCH4IV ACGT 3 cut(s) 459, 545, 721
HpyCH4V TGCA 7 cut(s) 88, 230, 242, 253, 285, 440, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 437
HpyF3I CTNAG 4 cut(s) 63, 180, 383, 753
HpySE526I ACGT 3 cut(s) 459, 545, 721
Hsp92II CATG 5 cut(s) 40, 253, 380, 764, 790
HspAI GCGC 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 1 cut(s) 730
LguI GCTCTTC 1 cut(s) 776
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 100, 413
LweI GCATC 5 cut(s) 21, 75, 229, 272, 577
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 459, 545, 721
MaeIII GTNAC 5 cut(s) 76, 455, 470, 577, 662
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 5 cut(s) 59, 158, 517, 793, 836
MfeI CAATTG 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 305, 649
MlsI TGGCCA 2 cut(s) 801, 840
MluCI AATT 6 cut(s) 17, 123, 317, 417, 490, 670
MluNI TGGCCA 2 cut(s) 801, 840
MlyI GAGTC 1 cut(s) 737
MnlI CCTC 4 cut(s) 250, 523, 759, 837
Mox20I TGGCCA 2 cut(s) 801, 840
MroXI GAANNNNTTC 1 cut(s) 339
MscI TGGCCA 2 cut(s) 801, 840
MseI TTAA 2 cut(s) 495, 874
MslI CAYNNNNRTG 2 cut(s) 83, 720
Msp20I TGGCCA 2 cut(s) 801, 840
MspR9I CCNGG 2 cut(s) 265, 406
MunI CAATTG 1 cut(s) 670
MvaI CCWGG 2 cut(s) 265, 406
MwoI GCNNNNNNNGC 2 cut(s) 269, 437
NdeII GATC 1 cut(s) 730
NlaIII CATG 5 cut(s) 40, 253, 380, 764, 790
NmuCI GTSAC 3 cut(s) 76, 577, 662
PciSI GCTCTTC 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 2 cut(s) 90, 403
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Ppu21I YACGTR 2 cut(s) 460, 722
Psp6I CCWGG 2 cut(s) 263, 404
PspEI GGTNACC 1 cut(s) 577
PspGI CCWGG 2 cut(s) 263, 404
PspPI GGNCC 1 cut(s) 518
RsaI GTAC 2 cut(s) 109, 375
RsaNI GTAC 2 cut(s) 108, 374
RseI CAYNNNNRTG 2 cut(s) 83, 720
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 495, 874
SatI GCNGC 2 cut(s) 89, 402
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 2 cut(s) 265, 406
SduI GDGCHC 2 cut(s) 305, 649
SetI ASST 9 cut(s) 186, 208, 433, 462, 548, 628, 724, 754, 848
SfaNI GCATC 5 cut(s) 21, 75, 229, 272, 577
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 2 cut(s) 83, 720
Sse9I AATT 6 cut(s) 17, 123, 317, 417, 490, 670
SsiI CCGC 1 cut(s) 667
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 263, 404
TaaI ACNGT 2 cut(s) 292, 340
TaiI ACGT 3 cut(s) 462, 548, 724
TasI AATT 6 cut(s) 17, 123, 317, 417, 490, 670
TatI WGTACW 1 cut(s) 373
Tru1I TTAA 2 cut(s) 495, 874
Tru9I TTAA 2 cut(s) 495, 874
TseFI GTSAC 3 cut(s) 76, 577, 662
TseI GCWGC 2 cut(s) 88, 401
Tsp45I GTSAC 3 cut(s) 76, 577, 662
TspDTI ATGAA 5 cut(s) 26, 332, 423, 705, 837
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 3 cut(s) 17, 123, 317
XbaI TCTAGA 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.