FvH4_3g41901

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017637
Physical Location & Seq
Reverse (-)
35077959 .. 35078354
396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41901.t1

Sequence Viewer

Length: 396 bp
ATGGAGGGTCGACATCAACAACAGGGTCAGGGCATTGGTCTGGTTCAGGGTCGGCATCAACAGCAGGCATCTGGCACCGTGGTGGTTGTGGCATCCGTCACTGGCTTAGCCATTGGAGGGTCACTTCTTGGCTTGATGGGGTTCAGCTTCTTGGCATCATTGACACTACTACTCTTCATCTCCCCACTCTTGTTGATCTTCAGTCCTCTCCTGTTGTTCACTGCGTTTGTGTTTGTGGGATCACTTGCCGGGTTTGCTGCAGCTGCCACCATGGCTCTCACCGGCATGTCTGCTCTGGGGTGGATTTATCAGGAGGTTGGAGGCCAGAGGCTTCTGGGTTTTGGCGGCGTCGATACGGCAAGTAGAGTGAAGGAGCAAGGGAGACTGACAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

132

Amino Acids

13.57

Weight (kDa)

9.96

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 29 - 121 1.6e-14 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g41901
malus_domestica MD03G1040200.v1.1
prunus_persica Prupe.6G032500_v2.0.a1
pyrus_communis pycom03g03090
rosa_chinensis RchiOBHm_Chr5g0075111
rosa_laevigata RLG00000036530
rosa_roxburghii Rroxscaffold_1G00006510
rosa_samantha Rh5AG493600 Rh5BG515100 Rh5CG538900 Rh5DG527600
rosa_wichuraiana Rw5G045790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 10
AciI CCGC 1 cut(s) 345
AclWI GGATC 1 cut(s) 247
AcuI CTGAAG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 2 cut(s) 147, 263
AluI AGCT 2 cut(s) 147, 263
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 257, 260, 263
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 271
BanI GGYRCC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 244, 250, 272
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 372
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 258, 261, 264, 346
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 4 cut(s) 259, 262, 265, 347
Bme1390I CCNGG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 4 cut(s) 64, 77, 101, 164
Bpu1102I GCTNAGC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 78, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 78, 270
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 244, 250, 272
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 2 cut(s) 249, 282
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 376
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 195, 239
Bsp1720I GCTNAGC 1 cut(s) 106
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 345
BspANI GGCC 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 78, 270
BssMI GATC 2 cut(s) 195, 239
BssNI GRCGYC 1 cut(s) 348
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 106
BstDSI CCRYGG 2 cut(s) 78, 270
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 2 cut(s) 198, 242
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 195, 239
BstMWI GCNNNNNNNGC 4 cut(s) 61, 254, 263, 272
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 244, 250, 272
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 2 cut(s) 78, 270
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 99, 219
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 2 cut(s) 271, 286
CviJI RGCY 8 cut(s) 105, 110, 132, 147, 263, 275, 324, 331
CviKI_1 RGCY 8 cut(s) 105, 110, 132, 147, 263, 275, 324, 331
DdeI CTNAG 1 cut(s) 106
DpnI GATC 2 cut(s) 197, 241
DpnII GATC 2 cut(s) 195, 239
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 274, 289
FaiI YATR 3 cut(s) 272, 287, 394
FatI CATG 2 cut(s) 270, 285
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 258, 261, 264, 346
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 4 cut(s) 258, 261, 264, 346
GluI GCNGC 4 cut(s) 258, 261, 264, 346
HaeIII GGCC 1 cut(s) 324
HapII CCGG 2 cut(s) 249, 282
HgaI GACGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 2 cut(s) 274, 289
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HpaII CCGG 2 cut(s) 249, 282
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 11, 219
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 11, 219
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 254, 263, 272
HpyF3I CTNAG 1 cut(s) 106
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 2 cut(s) 274, 289
Kzo9I GATC 2 cut(s) 195, 239
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 3 cut(s) 244, 250, 272
LweI GCATC 4 cut(s) 64, 77, 101, 164
MaeIII GTNAC 2 cut(s) 97, 120
MalI GATC 2 cut(s) 197, 241
MboI GATC 2 cut(s) 195, 239
MboII GAAGA 2 cut(s) 166, 190
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 5 cut(s) 110, 216, 307, 314, 321
MslI CAYNNNNRTG 2 cut(s) 80, 284
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 249, 282
MspR9I CCNGG 1 cut(s) 250
MwoI GCNNNNNNNGC 4 cut(s) 61, 254, 263, 272
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 195, 239
NlaIII CATG 2 cut(s) 274, 289
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 97, 120
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 80
PkrI GCNGC 4 cut(s) 259, 262, 265, 347
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 263
RseI CAYNNNNRTG 2 cut(s) 80, 284
SalI GTCGAC 1 cut(s) 9
SatI GCNGC 4 cut(s) 258, 261, 264, 346
Sau3AI GATC 2 cut(s) 195, 239
ScrFI CCNGG 1 cut(s) 250
SetI ASST 3 cut(s) 149, 265, 318
SfaNI GCATC 4 cut(s) 64, 77, 101, 164
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 80, 284
SsiI CCGC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 10, 351
TauI GCSGC 1 cut(s) 348
TscAI CASTG 2 cut(s) 106, 226
TseFI GTSAC 2 cut(s) 97, 120
TseI GCWGC 3 cut(s) 257, 260, 263
Tsp45I GTSAC 2 cut(s) 97, 120
TspDTI ATGAA 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 106, 226
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.